Wall clock time and date at job start Mon Mar 30 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47139 * 2 1 4 4 C 1.52998 * 109.47116 * 239.99875 * 2 1 3 5 5 C 1.53001 * 109.46872 * 120.00110 * 2 1 3 6 6 N 1.46498 * 109.47108 * 59.99736 * 5 2 1 7 7 C 1.46500 * 120.00184 * 269.99848 * 6 5 2 8 8 C 1.50695 * 109.47360 * 270.00092 * 7 6 5 9 9 H 1.08006 * 119.99886 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00437 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00424 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47087 * 59.99986 * 12 10 8 14 14 H 1.48501 * 109.47059 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47145 * 300.00293 * 12 10 8 16 16 C 1.39678 * 119.99677 * 90.00277 * 6 5 2 17 17 C 1.38915 * 120.06984 * 180.02562 * 16 6 5 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47152 * 300.00190 * 1 2 3 23 23 H 1.09001 * 109.46929 * 59.99976 * 1 2 3 24 24 H 1.08994 * 109.47312 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46533 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47230 * 299.99840 * 3 2 1 27 27 H 1.08999 * 109.47171 * 60.00358 * 3 2 1 28 28 H 1.09004 * 109.47133 * 300.00226 * 4 2 1 29 29 H 1.09001 * 109.47100 * 60.00253 * 4 2 1 30 30 H 1.09005 * 109.47315 * 180.02562 * 4 2 1 31 31 H 1.08995 * 109.46987 * 299.99801 * 5 2 1 32 32 H 1.09000 * 109.47190 * 180.02562 * 5 2 1 33 33 H 1.08994 * 109.46748 * 30.00133 * 7 6 5 34 34 H 1.09004 * 109.46919 * 150.00058 * 7 6 5 35 35 H 0.97006 * 120.00477 * 180.02562 * 11 10 8 36 36 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 37 37 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 38 38 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.5516 -2.1025 1.2492 7 6 0.2715 -2.4268 1.8836 8 6 0.5023 -2.7748 3.3315 9 1 1.5026 -2.7567 3.7385 10 6 -0.5634 -3.1164 4.1368 11 7 -1.7814 -3.1390 3.6412 12 14 -0.2775 -3.5472 5.9318 13 1 0.3403 -2.3891 6.6264 14 1 -1.5752 -3.8748 6.5751 15 1 0.6299 -4.7194 6.0211 16 6 2.3065 -3.1101 0.6445 17 6 1.8445 -4.4202 0.6431 18 6 2.5932 -5.4140 0.0438 19 6 3.8011 -5.1060 -0.5550 20 6 4.2638 -3.8029 -0.5554 21 6 3.5202 -2.8043 0.0421 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6767 -1.7490 -1.2492 29 1 1.6767 -0.2074 -2.1392 30 1 3.1301 -0.7217 -1.2490 31 1 1.6767 -0.2075 2.1392 32 1 3.1300 -0.7209 1.2495 33 1 -0.3945 -1.5665 1.8184 34 1 -0.1818 -3.2767 1.3734 35 1 -2.5313 -3.3790 4.2078 36 1 0.9032 -4.6620 1.1141 37 1 2.2349 -6.4329 0.0427 38 1 4.3844 -5.8851 -1.0233 39 1 5.2074 -3.5657 -1.0242 40 1 3.8825 -1.7868 0.0418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713328826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:15 Heat of formation + Delta-G solvation = 5.683498 kcal Electronic energy + Delta-G solvation = -18727.096229 eV Core-core repulsion = 16119.777248 eV Total energy + Delta-G solvation = -2607.318981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.75158 -38.43698 -36.02866 -34.45742 -31.80562 -30.68959 -29.21666 -28.10039 -27.96233 -26.43564 -24.48354 -22.90493 -21.48909 -19.61856 -18.62184 -18.31771 -16.88294 -16.32110 -16.05014 -15.84168 -15.44978 -14.92187 -14.79503 -14.42957 -14.16036 -14.00898 -13.68241 -13.24919 -13.10239 -13.00330 -12.80271 -12.55940 -12.47592 -12.41952 -12.24962 -12.05679 -11.94958 -11.72767 -11.52924 -11.46783 -11.16298 -10.59640 -10.37362 -9.60463 -8.34111 -7.74701 -6.34450 0.74575 0.97398 1.35874 1.37465 1.45591 2.34431 2.65961 3.08058 3.22039 3.89396 3.95398 4.07145 4.25762 4.31227 4.48144 4.54749 4.62779 4.76237 4.79847 4.83254 4.87778 4.95111 4.97274 5.01992 5.11075 5.11640 5.18080 5.25700 5.26045 5.36821 5.38208 5.52946 5.57530 5.64670 5.75160 5.81396 5.93243 6.12660 6.27661 6.56470 6.88653 7.02586 7.37210 8.84628 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.009025 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.327299 B = 3101.665861 C = 4285.794236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 C -0.131 4.131 4 C -0.129 4.129 5 C 0.135 3.865 6 N -0.613 5.613 7 C 0.270 3.730 8 C -0.542 4.542 9 H 0.047 0.953 10 C 0.013 3.987 11 N -0.926 5.926 12 Si 0.957 3.043 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.275 1.275 16 C 0.219 3.781 17 C -0.225 4.225 18 C -0.084 4.084 19 C -0.199 4.199 20 C -0.075 4.075 21 C -0.212 4.212 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.022 0.978 34 H 0.001 0.999 35 H 0.266 0.734 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.171 4.511 -9.111 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 C -0.188 4.188 4 C -0.186 4.186 5 C 0.011 3.989 6 N -0.319 5.319 7 C 0.148 3.852 8 C -0.580 4.580 9 H 0.065 0.935 10 C -0.186 4.186 11 N -0.566 5.566 12 Si 0.782 3.218 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.200 1.200 16 C 0.115 3.885 17 C -0.248 4.248 18 C -0.102 4.102 19 C -0.219 4.219 20 C -0.094 4.094 21 C -0.235 4.235 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.040 0.960 34 H 0.019 0.981 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.844 4.647 -8.953 14.094 hybrid contribution -0.766 -0.524 1.334 1.625 sum 9.078 4.123 -7.619 12.548 Atomic orbital electron populations 1.21862 0.95777 1.00631 1.00922 1.21019 0.95254 0.96557 0.95624 1.21754 1.01535 0.93370 1.02187 1.21926 1.01175 0.99346 0.96187 1.21476 0.98779 0.81450 0.97189 1.46882 1.21437 1.05409 1.58199 1.18801 0.80963 0.94852 0.90566 1.21824 0.93186 1.46349 0.96686 0.93513 1.25730 0.94742 0.95269 1.02846 1.70029 0.99390 1.49330 1.37820 0.85627 0.77441 0.78830 0.79896 1.19421 1.20460 1.20041 1.18135 0.91181 0.88347 0.90878 1.20816 1.02351 0.93298 1.08362 1.21034 0.94930 0.98215 0.96066 1.21043 0.97530 0.97475 1.05876 1.21141 0.99109 0.92259 0.96884 1.20909 0.95097 1.00843 1.06640 0.94020 0.91818 0.94819 0.91284 0.91410 0.92902 0.94622 0.92357 0.91277 0.92736 0.90316 0.96000 0.98059 0.92531 0.89114 0.85822 0.84484 0.83621 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 7.23 71.98 0.52 -3.96 16 2 C -0.08 -2.41 0.84 -52.18 -0.04 -2.46 16 3 C -0.13 -2.89 8.47 71.98 0.61 -2.28 16 4 C -0.13 -3.52 6.90 71.98 0.50 -3.03 16 5 C 0.13 4.71 4.52 86.38 0.39 5.10 16 6 N -0.61 -26.20 2.08 -701.65 -1.46 -27.66 16 7 C 0.27 14.06 3.82 85.63 0.33 14.38 16 8 C -0.54 -30.66 9.39 25.60 0.24 -30.42 16 9 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 10 C 0.01 0.75 5.46 84.65 0.46 1.21 16 11 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 12 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 15 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 16 C 0.22 8.88 5.21 38.21 0.20 9.08 16 17 C -0.23 -9.64 9.20 22.40 0.21 -9.44 16 18 C -0.08 -2.93 10.04 22.25 0.22 -2.71 16 19 C -0.20 -5.82 10.04 22.29 0.22 -5.60 16 20 C -0.08 -2.11 10.04 22.25 0.22 -1.89 16 21 C -0.21 -6.89 7.16 22.40 0.16 -6.73 16 22 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.03 1.33 5.99 -2.39 -0.01 1.32 16 25 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.03 1.18 6.00 -2.39 -0.01 1.17 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.64 6.35 -2.38 -0.02 1.63 16 31 H 0.05 2.08 8.07 -2.39 -0.02 2.06 16 32 H 0.08 2.43 6.20 -2.39 -0.01 2.42 16 33 H 0.02 1.20 6.05 -2.39 -0.01 1.19 16 34 H 0.00 0.08 6.20 -2.39 -0.01 0.07 16 35 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 36 H 0.09 4.51 6.15 -2.91 -0.02 4.49 16 37 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 39 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 40 H 0.13 3.78 4.53 -2.91 -0.01 3.77 16 Total: -1.00 -62.63 309.17 6.09 -56.54 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.00 Total: 17.69 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 4.24 Total: -38.73 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.18 Total: -82.21 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -62.63 6.09 -56.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713328826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.222 kcal (2) G-P(sol) polarization free energy of solvation -62.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds