Wall clock time and date at job start Mon Mar 30 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47112 * 89.99855 * 9 7 5 11 11 H 1.48503 * 109.47291 * 209.99893 * 9 7 5 12 12 H 1.48501 * 109.47274 * 330.00084 * 9 7 5 13 13 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 14 14 C 1.46904 * 110.99770 * 58.95488 * 13 2 1 15 15 C 1.46895 * 111.00230 * 295.00304 * 13 2 1 16 16 H 1.08999 * 109.47628 * 59.99863 * 15 13 2 17 17 C 1.53001 * 109.47068 * 299.99914 * 15 13 2 18 18 C 1.50699 * 109.47248 * 180.02562 * 15 13 2 19 19 C 1.38225 * 120.00340 * 39.71913 * 18 15 13 20 20 C 1.38238 * 120.00444 * 179.81084 * 19 18 15 21 21 C 1.38241 * 119.99384 * 0.40422 * 20 19 18 22 22 C 1.38229 * 120.00311 * 359.85084 * 21 20 19 23 23 C 1.38234 * 119.99998 * 359.95951 * 22 21 20 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 28 28 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 29 29 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 30 30 H 1.08992 * 109.47139 * 59.99870 * 14 13 2 31 31 H 1.08998 * 109.46871 * 180.02562 * 14 13 2 32 32 H 1.09004 * 109.46908 * 299.99719 * 14 13 2 33 33 H 1.09005 * 109.47351 * 59.99858 * 17 15 13 34 34 H 1.08995 * 109.47383 * 180.02562 * 17 15 13 35 35 H 1.09009 * 109.47242 * 300.00106 * 17 15 13 36 36 H 1.07998 * 119.99941 * 0.02562 * 19 18 15 37 37 H 1.07997 * 120.00853 * 180.23086 * 20 19 18 38 38 H 1.07997 * 119.99652 * 179.83128 * 21 20 19 39 39 H 1.07997 * 120.00266 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00095 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3578 8 7 3.5764 -1.8386 -3.2990 9 14 6.0919 -1.0611 -2.4369 10 1 6.7008 -2.2130 -1.7246 11 1 6.5290 -1.0697 -3.8562 12 1 6.5260 0.2046 -1.7929 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0761 1.2459 15 6 1.6487 0.0391 2.4180 16 1 0.5632 0.1176 2.4786 17 6 2.2599 1.4411 2.3772 18 6 2.1675 -0.6995 3.6249 19 6 3.4175 -1.2884 3.5903 20 6 3.8950 -1.9625 4.6986 21 6 3.1188 -2.0549 5.8388 22 6 1.8665 -1.4705 5.8716 23 6 1.3907 -0.7930 4.7646 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.7515 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 4.0608 -2.2459 -4.0341 30 1 1.8762 -2.6150 0.3647 31 1 1.9053 -2.5656 2.1439 32 1 0.4384 -2.0742 1.2639 33 1 1.8851 1.9756 1.5042 34 1 1.9850 1.9838 3.2816 35 1 3.3455 1.3627 2.3167 36 1 4.0227 -1.2188 2.6985 37 1 4.8732 -2.4194 4.6730 38 1 3.4907 -2.5839 6.7038 39 1 1.2599 -1.5430 6.7622 40 1 0.4121 -0.3368 4.7901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:39 Heat of formation + Delta-G solvation = 25.266572 kcal Electronic energy + Delta-G solvation = -18472.073196 eV Core-core repulsion = 15865.603401 eV Total energy + Delta-G solvation = -2606.469795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59481 -37.59810 -33.54413 -32.09127 -30.72796 -29.67398 -29.23645 -27.28893 -24.67445 -23.70548 -22.70908 -22.30829 -20.26544 -18.27733 -16.63189 -16.18306 -15.80821 -15.18840 -14.53927 -14.41203 -13.88292 -13.79436 -13.33848 -13.11794 -12.63840 -12.54670 -12.18493 -11.93976 -11.68776 -11.58683 -11.39524 -11.22091 -10.95775 -10.83929 -10.75932 -10.57301 -10.41651 -10.30294 -9.74829 -9.13656 -8.96090 -8.70680 -8.44720 -8.23860 -7.43464 -5.87399 -3.85135 1.54627 1.62372 3.39924 3.46018 3.49810 3.98861 4.55238 4.58339 4.96075 5.09773 5.16037 5.34648 5.49562 5.53619 5.64184 5.70046 5.78410 5.84492 5.90882 5.97943 6.04253 6.05807 6.15448 6.21669 6.28820 6.31769 6.51274 6.56791 6.62758 6.70733 6.75494 6.80595 6.91733 7.05245 7.22803 7.57104 7.73664 7.94718 8.05618 8.14887 8.59970 9.21084 9.76598 11.24613 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.006756 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.471350 B = 4143.344955 C = 4820.283635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.075 0.925 4 C 0.029 3.971 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.505 5.505 14 C 0.023 3.977 15 C 0.113 3.887 16 H 0.041 0.959 17 C -0.139 4.139 18 C -0.067 4.067 19 C -0.088 4.088 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.122 4.122 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.020 0.980 28 H 0.017 0.983 29 H 0.257 0.743 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.014 0.986 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 1.995 15.414 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.025 4.025 3 H 0.093 0.907 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.229 5.229 14 C -0.125 4.125 15 C 0.004 3.996 16 H 0.059 0.941 17 C -0.196 4.196 18 C -0.067 4.067 19 C -0.106 4.106 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.141 4.141 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.740 1.897 15.215 15.783 hybrid contribution 0.087 -0.083 -0.052 0.131 sum -3.653 1.814 15.164 15.703 Atomic orbital electron populations 1.22518 1.00020 1.01334 1.00594 1.21985 0.89929 0.98859 0.91692 0.90718 1.19225 0.96360 0.95444 0.89811 1.21171 0.91775 1.32861 1.06926 0.92106 1.25002 0.97917 0.95947 0.96014 1.69964 1.35162 1.36956 1.12425 0.86652 0.86552 0.78325 0.76758 1.20952 1.21665 1.20026 1.62199 1.58871 1.01557 1.00236 1.22425 0.96514 0.90748 1.02793 1.20587 0.96628 0.93564 0.88820 0.94120 1.21836 1.02226 0.94579 1.00983 1.19909 0.94631 0.97578 0.94617 1.21263 0.95578 0.95419 0.98352 1.21211 0.99834 0.99877 0.93521 1.21070 0.94947 1.00596 0.98172 1.20991 0.96302 0.99153 0.98166 1.20996 0.99540 1.00156 0.93396 0.94144 0.92578 0.92868 0.96177 0.96436 0.93357 0.89903 0.92563 0.96738 0.91908 0.93136 0.91539 0.84438 0.86382 0.86765 0.86714 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 8.50 37.16 0.32 -2.89 16 2 C 0.08 1.67 2.03 -67.71 -0.14 1.53 16 3 H 0.07 1.52 6.05 -51.93 -0.31 1.20 16 4 C 0.03 0.72 4.26 -27.88 -0.12 0.60 16 5 C -0.49 -13.50 8.84 -34.44 -0.30 -13.80 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.51 -9.43 3.67 -228.30 -0.84 -10.26 16 14 C 0.02 0.43 8.42 60.07 0.51 0.93 16 15 C 0.11 1.77 1.99 -68.87 -0.14 1.63 16 16 H 0.04 0.63 6.30 -51.93 -0.33 0.30 16 17 C -0.14 -2.05 8.95 37.16 0.33 -1.72 16 18 C -0.07 -1.00 3.72 -104.62 -0.39 -1.38 16 19 C -0.09 -1.35 8.09 -39.59 -0.32 -1.67 16 20 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 21 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 22 C -0.13 -1.53 10.05 -39.59 -0.40 -1.92 16 23 C -0.12 -1.60 9.67 -39.58 -0.38 -1.99 16 24 H 0.04 0.62 6.52 -51.93 -0.34 0.28 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.93 6.38 -51.93 -0.33 0.59 16 27 H 0.02 0.54 6.17 -51.93 -0.32 0.22 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.08 1.74 6.22 -51.93 -0.32 1.42 16 31 H 0.06 0.98 6.01 -51.93 -0.31 0.66 16 32 H 0.01 0.25 6.28 -51.93 -0.33 -0.08 16 33 H 0.06 0.94 6.30 -51.93 -0.33 0.61 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.14 2.36 7.71 -52.49 -0.40 1.95 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.11 1.32 8.04 -52.49 -0.42 0.89 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -29.38 312.66 -8.58 -37.96 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.25 Total: 0.45 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -1.93 Total: -23.39 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.10 Total: -36.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.38 -8.58 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.226 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds