Wall clock time and date at job start Mon Mar 30 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50703 * 109.46970 * 175.00092 * 4 2 1 6 6 H 1.08002 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00164 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00234 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47112 * 89.99855 * 9 7 5 11 11 H 1.48503 * 109.47291 * 209.99893 * 9 7 5 12 12 H 1.48501 * 109.47274 * 330.00084 * 9 7 5 13 13 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 14 14 C 1.46904 * 110.99770 * 58.95488 * 13 2 1 15 15 C 1.46895 * 111.00230 * 295.00304 * 13 2 1 16 16 H 1.08999 * 109.47628 * 59.99863 * 15 13 2 17 17 C 1.53001 * 109.47068 * 299.99914 * 15 13 2 18 18 C 1.50699 * 109.47248 * 180.02562 * 15 13 2 19 19 C 1.38225 * 120.00340 * 39.71913 * 18 15 13 20 20 C 1.38238 * 120.00444 * 179.81084 * 19 18 15 21 21 C 1.38241 * 119.99384 * 0.40422 * 20 19 18 22 22 C 1.38229 * 120.00311 * 359.85084 * 21 20 19 23 23 C 1.38234 * 119.99998 * 359.95951 * 22 21 20 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 28 28 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 29 29 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 30 30 H 1.08992 * 109.47139 * 59.99870 * 14 13 2 31 31 H 1.08998 * 109.46871 * 180.02562 * 14 13 2 32 32 H 1.09004 * 109.46908 * 299.99719 * 14 13 2 33 33 H 1.09005 * 109.47351 * 59.99858 * 17 15 13 34 34 H 1.08995 * 109.47383 * 180.02562 * 17 15 13 35 35 H 1.09009 * 109.47242 * 300.00106 * 17 15 13 36 36 H 1.07998 * 119.99941 * 0.02562 * 19 18 15 37 37 H 1.07997 * 120.00853 * 180.23086 * 20 19 18 38 38 H 1.07997 * 119.99652 * 179.83128 * 21 20 19 39 39 H 1.07997 * 120.00266 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00095 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1935 -2.3578 8 7 3.5764 -1.8386 -3.2990 9 14 6.0919 -1.0611 -2.4369 10 1 6.7008 -2.2130 -1.7246 11 1 6.5290 -1.0697 -3.8562 12 1 6.5260 0.2046 -1.7929 13 7 2.0197 -0.6925 1.1994 14 6 1.5283 -2.0761 1.2459 15 6 1.6487 0.0391 2.4180 16 1 0.5632 0.1176 2.4786 17 6 2.2599 1.4411 2.3772 18 6 2.1675 -0.6995 3.6249 19 6 3.4175 -1.2884 3.5903 20 6 3.8950 -1.9625 4.6986 21 6 3.1188 -2.0549 5.8388 22 6 1.8665 -1.4705 5.8716 23 6 1.3907 -0.7930 4.7646 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.7515 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 4.0608 -2.2459 -4.0341 30 1 1.8762 -2.6150 0.3647 31 1 1.9053 -2.5656 2.1439 32 1 0.4384 -2.0742 1.2639 33 1 1.8851 1.9756 1.5042 34 1 1.9850 1.9838 3.2816 35 1 3.3455 1.3627 2.3167 36 1 4.0227 -1.2188 2.6985 37 1 4.8732 -2.4194 4.6730 38 1 3.4907 -2.5839 6.7038 39 1 1.2599 -1.5430 6.7622 40 1 0.4121 -0.3368 4.7901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:39 Heat of formation + Delta-G solvation = 9.614676 kcal Electronic energy + Delta-G solvation = -18472.751913 eV Core-core repulsion = 15865.603401 eV Total energy + Delta-G solvation = -2607.148512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78165 -38.91801 -35.29327 -33.82620 -31.77872 -31.15501 -30.41146 -29.13811 -26.14887 -25.30915 -24.26423 -23.33491 -21.55691 -19.79023 -18.34859 -17.68117 -17.23610 -16.58004 -16.14114 -15.80552 -15.14561 -15.12752 -14.70217 -14.25611 -14.11467 -13.89937 -13.80595 -13.44483 -13.16949 -12.99365 -12.86397 -12.78204 -12.57296 -12.39489 -12.16749 -12.15158 -11.97314 -11.76060 -11.29392 -11.07701 -10.96120 -10.45457 -9.71297 -9.49252 -8.88016 -8.08700 -6.12937 0.53648 0.61034 1.41532 1.42187 1.52901 2.47757 2.94345 3.16604 3.29489 3.82395 4.08845 4.23698 4.26350 4.32911 4.39124 4.43963 4.46309 4.53996 4.61113 4.70832 4.75492 4.80263 4.90034 4.95606 5.08527 5.14038 5.22090 5.22950 5.25426 5.28838 5.41925 5.52592 5.65757 5.72740 5.73727 5.85362 5.92870 6.21837 6.35314 6.47271 6.58272 7.01222 7.52784 9.03416 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.006756 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.471350 B = 4143.344955 C = 4820.283635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 H 0.073 0.927 4 C 0.035 3.965 5 C -0.495 4.495 6 H 0.058 0.942 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.522 5.522 14 C 0.035 3.965 15 C 0.116 3.884 16 H 0.053 0.947 17 C -0.135 4.135 18 C -0.081 4.081 19 C -0.110 4.110 20 C -0.135 4.135 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.125 4.125 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.049 0.951 27 H -0.003 1.003 28 H -0.009 1.009 29 H 0.258 0.742 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 2.491 18.141 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 H 0.091 0.909 4 C -0.003 4.003 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.245 5.245 14 C -0.113 4.113 15 C 0.008 3.992 16 H 0.070 0.930 17 C -0.192 4.192 18 C -0.081 4.081 19 C -0.129 4.129 20 C -0.153 4.153 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.143 4.143 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.016 0.984 28 H 0.009 0.991 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.086 2.404 17.958 18.573 hybrid contribution 0.186 -0.255 -0.828 0.886 sum -3.900 2.148 17.130 17.699 Atomic orbital electron populations 1.22389 0.97564 1.01540 1.02007 1.21678 0.91841 0.97842 0.90263 0.90925 1.19082 0.95229 0.94444 0.91501 1.21476 0.93212 1.32129 1.06513 0.92387 1.25821 1.02629 0.95780 0.95806 1.70093 1.36967 1.38105 1.13141 0.85620 0.80978 0.78616 0.76831 1.20505 1.21274 1.19055 1.62061 1.59679 1.01767 1.01021 1.22234 0.97111 0.90554 1.01382 1.20619 0.97276 0.93615 0.87657 0.92959 1.21810 1.00992 0.94417 1.02019 1.19856 0.94826 0.98398 0.95039 1.21115 0.96070 0.97452 0.98251 1.21387 1.00659 0.99675 0.93546 1.21419 0.94808 1.00002 0.98306 1.21385 0.96370 0.97697 0.98738 1.21229 1.00051 1.00106 0.92933 0.91425 0.92426 0.93230 0.98448 0.99116 0.93360 0.93529 0.91661 0.95457 0.92309 0.90667 0.93305 0.87433 0.85417 0.83987 0.83640 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.92 8.50 71.98 0.61 -5.31 16 2 C 0.09 3.72 2.03 44.92 0.09 3.81 16 3 H 0.07 2.97 6.05 -2.39 -0.01 2.95 16 4 C 0.03 1.81 4.26 29.85 0.13 1.93 16 5 C -0.49 -28.15 8.84 25.60 0.23 -27.93 16 6 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 8 N -0.94 -58.18 13.29 21.44 0.28 -57.90 16 9 Si 0.95 45.91 29.54 68.60 2.03 47.94 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.52 -19.57 3.67 -876.20 -3.21 -22.79 16 14 C 0.04 1.32 8.42 127.69 1.07 2.39 16 15 C 0.12 3.49 1.99 44.17 0.09 3.58 16 16 H 0.05 1.46 6.30 -2.39 -0.02 1.45 16 17 C -0.13 -3.83 8.95 71.98 0.64 -3.18 16 18 C -0.08 -2.28 3.72 -19.87 -0.07 -2.35 16 19 C -0.11 -3.36 8.09 22.27 0.18 -3.18 16 20 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 21 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 22 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 23 C -0.12 -2.87 9.67 22.27 0.22 -2.65 16 24 H 0.07 1.90 6.52 -2.39 -0.02 1.89 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.69 6.38 -2.39 -0.02 1.67 16 27 H 0.00 -0.15 6.17 -2.39 -0.01 -0.17 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.05 2.05 6.22 -2.39 -0.01 2.03 16 31 H 0.06 2.28 6.01 -2.39 -0.01 2.27 16 32 H 0.03 0.93 6.28 -2.38 -0.01 0.91 16 33 H 0.06 1.69 6.30 -2.38 -0.02 1.67 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.11 3.86 7.71 -2.91 -0.02 3.83 16 37 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.13 2.52 8.04 -2.91 -0.02 2.50 16 Total: -1.00 -64.54 312.66 4.42 -60.12 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.00 Total: 13.18 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 4.32 Total: -40.56 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.93 Total: -80.68 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -64.54 4.42 -60.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.736 kcal (2) G-P(sol) polarization free energy of solvation -64.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds