Wall clock time and date at job start Mon Mar 30 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47302 * 2 1 4 4 C 1.53004 * 109.46999 * 240.00643 * 2 1 3 5 5 C 1.50693 * 109.47202 * 168.24905 * 4 2 1 6 6 H 1.08003 * 120.00179 * 354.66520 * 5 4 2 7 7 C 1.37877 * 120.00224 * 174.66845 * 5 4 2 8 8 N 1.31520 * 119.99901 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00266 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46949 * 90.00101 * 9 7 5 11 11 H 1.48498 * 109.47174 * 209.99496 * 9 7 5 12 12 H 1.48501 * 109.47361 * 330.00097 * 9 7 5 13 13 N 1.46899 * 109.47399 * 120.00397 * 2 1 3 14 14 C 1.46896 * 110.99798 * 86.01925 * 13 2 1 15 15 C 1.46898 * 111.00065 * 209.97610 * 13 2 1 16 16 H 1.09006 * 109.46914 * 296.66322 * 15 13 2 17 17 C 1.52997 * 109.47219 * 56.66573 * 15 13 2 18 18 C 1.50694 * 109.47008 * 176.66587 * 15 13 2 19 19 C 1.38235 * 120.00188 * 319.72567 * 18 15 13 20 20 C 1.38238 * 120.00205 * 179.80872 * 19 18 15 21 21 C 1.38237 * 119.99746 * 0.40183 * 20 19 18 22 22 C 1.38236 * 120.00276 * 359.84840 * 21 20 19 23 23 C 1.38236 * 119.99641 * 359.96371 * 22 21 20 24 24 H 1.09001 * 109.47137 * 64.54686 * 1 2 3 25 25 H 1.08991 * 109.47103 * 184.55345 * 1 2 3 26 26 H 1.09007 * 109.46735 * 304.55044 * 1 2 3 27 27 H 1.09000 * 109.46724 * 288.24740 * 4 2 1 28 28 H 1.08997 * 109.47191 * 48.24614 * 4 2 1 29 29 H 0.96997 * 120.00252 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46944 * 70.35765 * 14 13 2 31 31 H 1.09002 * 109.47269 * 190.35579 * 14 13 2 32 32 H 1.09002 * 109.47546 * 310.35726 * 14 13 2 33 33 H 1.08992 * 109.47403 * 53.31226 * 17 15 13 34 34 H 1.09007 * 109.46979 * 173.31511 * 17 15 13 35 35 H 1.09005 * 109.46960 * 293.31039 * 17 15 13 36 36 H 1.07998 * 120.00080 * 359.97438 * 19 18 15 37 37 H 1.07998 * 120.00041 * 180.23024 * 20 19 18 38 38 H 1.08002 * 120.00008 * 179.83684 * 21 20 19 39 39 H 1.07995 * 120.00246 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.99681 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5189 -0.4755 -1.4026 6 1 4.0261 0.2025 -0.7322 7 6 4.2246 -1.1163 -2.3989 8 7 3.6071 -1.9423 -3.2151 9 14 6.0576 -0.8113 -2.5893 10 1 6.8107 -1.7925 -1.7674 11 1 6.4393 -0.9646 -4.0162 12 1 6.3801 0.5655 -2.1358 13 7 2.0198 -0.6926 1.1994 14 6 2.1055 -2.1414 0.9725 15 6 3.3153 -0.1493 1.6289 16 1 4.0598 -0.3291 0.8532 17 6 3.1827 1.3558 1.8696 18 6 3.7457 -0.8261 2.9046 19 6 2.8162 -1.0955 3.8917 20 6 3.2102 -1.7199 5.0604 21 6 4.5353 -2.0674 5.2454 22 6 5.4658 -1.7934 4.2605 23 6 5.0710 -1.1725 3.0903 24 1 -0.3633 0.4417 -0.9279 25 1 -0.3633 -1.0243 0.0816 26 1 -0.3633 0.5829 0.8465 27 1 1.8577 -1.7913 -1.1510 28 1 1.5159 -0.3424 -2.1268 29 1 4.1036 -2.3934 -3.9157 30 1 2.9214 -2.3532 0.2814 31 1 2.2913 -2.6472 1.9200 32 1 1.1675 -2.4988 0.5477 33 1 2.3576 1.5425 2.5568 34 1 4.1082 1.7377 2.3007 35 1 2.9880 1.8594 0.9227 36 1 1.7816 -0.8205 3.7488 37 1 2.4833 -1.9337 5.8300 38 1 4.8437 -2.5528 6.1596 39 1 6.5011 -2.0645 4.4053 40 1 5.7979 -0.9588 2.3206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:42 Heat of formation + Delta-G solvation = 26.283688 kcal Electronic energy + Delta-G solvation = -18751.270995 eV Core-core repulsion = 16144.845305 eV Total energy + Delta-G solvation = -2606.425690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.41855 -37.52059 -33.34757 -32.22334 -30.60091 -29.66824 -29.10266 -27.41624 -24.44332 -23.49094 -22.71886 -22.18927 -20.12106 -18.30325 -16.74599 -16.16861 -15.68100 -14.89090 -14.67401 -14.39636 -13.83470 -13.63607 -13.02233 -12.75765 -12.63616 -12.57432 -12.00161 -11.84070 -11.58666 -11.54857 -11.42912 -11.04735 -10.85781 -10.78692 -10.61274 -10.54895 -10.34967 -10.14292 -9.85371 -9.35084 -8.98422 -8.59253 -8.40067 -8.30341 -7.24449 -6.04665 -4.06296 1.68754 1.73326 3.26107 3.33815 3.35465 4.11350 4.40441 4.74341 5.15258 5.24965 5.27209 5.31808 5.45282 5.80796 5.82819 5.89277 5.90467 6.01316 6.11421 6.20212 6.30382 6.33474 6.36556 6.41231 6.51240 6.54755 6.70314 6.75124 6.78931 6.81607 6.83676 6.95696 7.05828 7.14672 7.33896 7.55023 7.65344 7.88516 8.05557 8.12777 8.36831 8.99626 9.56735 11.06123 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.008415 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.053558 B = 3326.623156 C = 4178.681217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 H 0.071 0.929 4 C -0.008 4.008 5 C -0.519 4.519 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.521 5.521 14 C 0.027 3.973 15 C 0.103 3.897 16 H 0.083 0.917 17 C -0.138 4.138 18 C -0.059 4.059 19 C -0.094 4.094 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.126 4.126 23 C -0.118 4.118 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 1.772 13.190 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 H 0.089 0.911 4 C -0.046 4.046 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.245 5.245 14 C -0.121 4.121 15 C -0.005 4.005 16 H 0.101 0.899 17 C -0.195 4.195 18 C -0.060 4.060 19 C -0.113 4.113 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.136 4.136 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.854 1.748 13.400 13.541 hybrid contribution 1.688 -0.186 -0.921 1.932 sum 0.835 1.562 12.479 12.604 Atomic orbital electron populations 1.21746 0.96545 1.00837 0.99867 1.21931 0.93306 0.98403 0.90167 0.91105 1.19836 0.95764 0.96980 0.92003 1.21295 0.93855 1.25968 1.14548 0.92284 1.24987 0.97950 0.95265 0.95887 1.69957 1.35813 1.28768 1.18487 0.86751 0.86177 0.78675 0.77436 1.20658 1.21207 1.19810 1.62391 1.24741 1.03849 1.33502 1.22313 1.01684 0.88551 0.99573 1.20838 0.93195 0.93330 0.93164 0.89906 1.21862 1.01030 0.94814 1.01831 1.20045 0.92950 0.97084 0.95903 1.21092 1.00095 0.97657 0.92419 1.21125 0.95838 1.00048 0.97827 1.21021 0.93690 1.01459 0.98984 1.21026 0.99156 0.99955 0.94227 1.21117 0.95993 0.99023 0.97508 0.93276 0.93484 0.93815 0.94868 0.96950 0.93038 0.92824 0.93585 0.92619 0.92508 0.93087 0.91736 0.85355 0.86766 0.86931 0.86720 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.42 37.16 0.35 -1.97 16 2 C 0.07 1.40 2.24 -67.71 -0.15 1.25 16 3 H 0.07 1.44 5.29 -51.93 -0.27 1.17 16 4 C -0.01 -0.20 3.96 -27.88 -0.11 -0.31 16 5 C -0.52 -13.75 7.10 -34.44 -0.24 -14.00 16 6 H 0.06 1.52 5.63 -52.48 -0.30 1.23 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.52 -9.79 3.77 -228.29 -0.86 -10.65 16 14 C 0.03 0.53 7.61 60.06 0.46 0.99 16 15 C 0.10 1.87 1.81 -68.87 -0.12 1.75 16 16 H 0.08 1.77 4.98 -51.93 -0.26 1.51 16 17 C -0.14 -2.24 8.78 37.16 0.33 -1.92 16 18 C -0.06 -0.99 3.88 -104.63 -0.41 -1.39 16 19 C -0.09 -1.43 8.31 -39.58 -0.33 -1.76 16 20 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 21 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 22 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 23 C -0.12 -1.87 9.67 -39.58 -0.38 -2.26 16 24 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 25 H 0.05 0.82 7.36 -51.93 -0.38 0.44 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.88 5.60 -51.93 -0.29 0.58 16 28 H 0.01 0.33 8.07 -51.93 -0.42 -0.09 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.05 1.24 6.30 -51.93 -0.33 0.91 16 31 H 0.05 0.84 6.59 -51.93 -0.34 0.50 16 32 H 0.06 1.08 6.76 -51.93 -0.35 0.73 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.09 6.19 -51.93 -0.32 0.77 16 36 H 0.13 1.94 7.73 -52.49 -0.41 1.54 16 37 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.86 8.04 -52.49 -0.42 1.44 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -28.24 309.81 -8.56 -36.81 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.18 Total: 2.84 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -1.91 Total: -24.43 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.13 Total: -36.05 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.24 -8.56 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.093 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds