Wall clock time and date at job start Mon Mar 30 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47302 * 2 1 4 4 C 1.53004 * 109.46999 * 240.00643 * 2 1 3 5 5 C 1.50693 * 109.47202 * 168.24905 * 4 2 1 6 6 H 1.08003 * 120.00179 * 354.66520 * 5 4 2 7 7 C 1.37877 * 120.00224 * 174.66845 * 5 4 2 8 8 N 1.31520 * 119.99901 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00266 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46949 * 90.00101 * 9 7 5 11 11 H 1.48498 * 109.47174 * 209.99496 * 9 7 5 12 12 H 1.48501 * 109.47361 * 330.00097 * 9 7 5 13 13 N 1.46899 * 109.47399 * 120.00397 * 2 1 3 14 14 C 1.46896 * 110.99798 * 86.01925 * 13 2 1 15 15 C 1.46898 * 111.00065 * 209.97610 * 13 2 1 16 16 H 1.09006 * 109.46914 * 296.66322 * 15 13 2 17 17 C 1.52997 * 109.47219 * 56.66573 * 15 13 2 18 18 C 1.50694 * 109.47008 * 176.66587 * 15 13 2 19 19 C 1.38235 * 120.00188 * 319.72567 * 18 15 13 20 20 C 1.38238 * 120.00205 * 179.80872 * 19 18 15 21 21 C 1.38237 * 119.99746 * 0.40183 * 20 19 18 22 22 C 1.38236 * 120.00276 * 359.84840 * 21 20 19 23 23 C 1.38236 * 119.99641 * 359.96371 * 22 21 20 24 24 H 1.09001 * 109.47137 * 64.54686 * 1 2 3 25 25 H 1.08991 * 109.47103 * 184.55345 * 1 2 3 26 26 H 1.09007 * 109.46735 * 304.55044 * 1 2 3 27 27 H 1.09000 * 109.46724 * 288.24740 * 4 2 1 28 28 H 1.08997 * 109.47191 * 48.24614 * 4 2 1 29 29 H 0.96997 * 120.00252 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46944 * 70.35765 * 14 13 2 31 31 H 1.09002 * 109.47269 * 190.35579 * 14 13 2 32 32 H 1.09002 * 109.47546 * 310.35726 * 14 13 2 33 33 H 1.08992 * 109.47403 * 53.31226 * 17 15 13 34 34 H 1.09007 * 109.46979 * 173.31511 * 17 15 13 35 35 H 1.09005 * 109.46960 * 293.31039 * 17 15 13 36 36 H 1.07998 * 120.00080 * 359.97438 * 19 18 15 37 37 H 1.07998 * 120.00041 * 180.23024 * 20 19 18 38 38 H 1.08002 * 120.00008 * 179.83684 * 21 20 19 39 39 H 1.07995 * 120.00246 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.99681 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5189 -0.4755 -1.4026 6 1 4.0261 0.2025 -0.7322 7 6 4.2246 -1.1163 -2.3989 8 7 3.6071 -1.9423 -3.2151 9 14 6.0576 -0.8113 -2.5893 10 1 6.8107 -1.7925 -1.7674 11 1 6.4393 -0.9646 -4.0162 12 1 6.3801 0.5655 -2.1358 13 7 2.0198 -0.6926 1.1994 14 6 2.1055 -2.1414 0.9725 15 6 3.3153 -0.1493 1.6289 16 1 4.0598 -0.3291 0.8532 17 6 3.1827 1.3558 1.8696 18 6 3.7457 -0.8261 2.9046 19 6 2.8162 -1.0955 3.8917 20 6 3.2102 -1.7199 5.0604 21 6 4.5353 -2.0674 5.2454 22 6 5.4658 -1.7934 4.2605 23 6 5.0710 -1.1725 3.0903 24 1 -0.3633 0.4417 -0.9279 25 1 -0.3633 -1.0243 0.0816 26 1 -0.3633 0.5829 0.8465 27 1 1.8577 -1.7913 -1.1510 28 1 1.5159 -0.3424 -2.1268 29 1 4.1036 -2.3934 -3.9157 30 1 2.9214 -2.3532 0.2814 31 1 2.2913 -2.6472 1.9200 32 1 1.1675 -2.4988 0.5477 33 1 2.3576 1.5425 2.5568 34 1 4.1082 1.7377 2.3007 35 1 2.9880 1.8594 0.9227 36 1 1.7816 -0.8205 3.7488 37 1 2.4833 -1.9337 5.8300 38 1 4.8437 -2.5528 6.1596 39 1 6.5011 -2.0645 4.4053 40 1 5.7979 -0.9588 2.3206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:42 Heat of formation + Delta-G solvation = 11.487430 kcal Electronic energy + Delta-G solvation = -18751.912609 eV Core-core repulsion = 16144.845305 eV Total energy + Delta-G solvation = -2607.067304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73311 -38.94678 -35.10768 -33.97049 -31.74601 -31.19166 -30.33808 -29.36314 -26.00373 -25.17551 -24.27324 -23.32444 -21.47266 -19.95058 -18.57906 -17.52138 -17.20426 -16.61412 -16.13587 -15.85696 -15.19920 -15.08302 -14.48311 -14.20263 -14.11301 -13.86498 -13.70811 -13.38212 -13.17382 -12.97408 -12.93374 -12.74797 -12.45690 -12.29161 -12.21519 -12.16230 -11.97876 -11.70259 -11.40003 -11.07091 -10.94902 -10.53999 -9.70002 -9.46589 -8.92309 -8.19052 -6.25895 0.56485 0.62536 1.33378 1.34469 1.43880 2.37069 2.97111 3.11794 3.27987 3.90678 4.15124 4.26464 4.29106 4.36835 4.46455 4.57973 4.63867 4.71345 4.74730 4.78850 4.82657 4.87342 4.97397 5.06734 5.16263 5.17546 5.23317 5.29703 5.31070 5.36467 5.39468 5.58066 5.61282 5.68818 5.72408 5.82499 5.91245 6.23763 6.24916 6.40625 6.48462 6.88893 7.40589 8.92270 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.008415 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.053558 B = 3326.623156 C = 4178.681217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.075 3.925 3 H 0.072 0.928 4 C -0.001 4.001 5 C -0.519 4.519 6 H 0.064 0.936 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.263 1.263 13 N -0.504 5.504 14 C 0.042 3.958 15 C 0.104 3.896 16 H 0.045 0.955 17 C -0.131 4.131 18 C -0.078 4.078 19 C -0.103 4.103 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.140 4.140 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.011 0.989 28 H -0.016 1.016 29 H 0.260 0.740 30 H 0.012 0.988 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 2.136 15.894 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.033 4.033 3 H 0.090 0.910 4 C -0.039 4.039 5 C -0.557 4.557 6 H 0.082 0.918 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.187 1.187 13 N -0.228 5.228 14 C -0.107 4.107 15 C -0.004 4.004 16 H 0.063 0.937 17 C -0.188 4.188 18 C -0.078 4.078 19 C -0.121 4.121 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.158 4.158 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.002 0.998 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.527 2.128 16.119 16.267 hybrid contribution 1.590 -0.327 -1.692 2.344 sum 1.063 1.800 14.427 14.578 Atomic orbital electron populations 1.21669 0.94188 1.01288 1.01098 1.21851 0.95216 0.97779 0.88501 0.90989 1.19758 0.94976 0.95984 0.93225 1.21648 0.94875 1.25188 1.13959 0.91774 1.25789 1.02327 0.95265 0.95850 1.70088 1.37504 1.30202 1.19391 0.85764 0.81051 0.79003 0.77270 1.20233 1.21082 1.18681 1.62502 1.25218 1.03095 1.31973 1.22135 0.99925 0.89431 0.99213 1.20766 0.91508 0.94926 0.93243 0.93679 1.21800 1.02208 0.93215 1.01609 1.19911 0.93737 0.98565 0.95603 1.21130 0.99706 0.98324 0.92928 1.21463 0.96790 0.98663 0.97557 1.21424 0.93242 1.00330 0.99667 1.21310 1.00656 0.99031 0.93508 1.21193 0.95715 1.00407 0.98514 0.93088 0.93638 0.91310 0.97113 0.99776 0.93158 0.96977 0.91953 0.92709 0.91126 0.91931 0.92824 0.85416 0.83939 0.83718 0.84602 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 9.42 71.98 0.68 -3.58 16 2 C 0.07 3.02 2.24 44.92 0.10 3.12 16 3 H 0.07 2.92 5.29 -2.39 -0.01 2.91 16 4 C 0.00 -0.08 3.96 29.85 0.12 0.04 16 5 C -0.52 -28.36 7.10 25.60 0.18 -28.18 16 6 H 0.06 3.39 5.63 -2.91 -0.02 3.38 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 9 Si 0.94 44.38 29.54 68.60 2.03 46.41 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.50 -18.88 3.77 -876.19 -3.31 -22.19 16 14 C 0.04 1.67 7.61 127.69 0.97 2.64 16 15 C 0.10 3.78 1.81 44.17 0.08 3.86 16 16 H 0.05 1.99 4.98 -2.38 -0.01 1.98 16 17 C -0.13 -4.14 8.78 71.98 0.63 -3.50 16 18 C -0.08 -2.51 3.88 -19.87 -0.08 -2.59 16 19 C -0.10 -2.90 8.31 22.27 0.19 -2.71 16 20 C -0.13 -2.95 10.05 22.27 0.22 -2.72 16 21 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 22 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 23 C -0.14 -4.34 9.67 22.27 0.22 -4.12 16 24 H 0.05 1.71 8.11 -2.39 -0.02 1.69 16 25 H 0.04 1.55 7.36 -2.39 -0.02 1.53 16 26 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.01 0.59 5.60 -2.39 -0.01 0.58 16 28 H -0.02 -0.91 8.07 -2.39 -0.02 -0.93 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 30 H 0.01 0.57 6.30 -2.38 -0.02 0.55 16 31 H 0.06 2.27 6.59 -2.39 -0.02 2.25 16 32 H 0.05 2.17 6.76 -2.39 -0.02 2.15 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.05 1.79 6.19 -2.38 -0.01 1.77 16 36 H 0.13 3.57 7.73 -2.91 -0.02 3.55 16 37 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.11 3.45 8.04 -2.91 -0.02 3.43 16 Total: -1.00 -62.17 309.81 4.23 -57.94 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 1.00 Total: 16.62 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 4.22 Total: -42.59 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -3.02 Total: -78.38 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -62.17 4.23 -57.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.426 kcal (2) G-P(sol) polarization free energy of solvation -62.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds