Wall clock time and date at job start Mon Mar 30 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47021 * 239.99808 * 2 1 3 5 5 C 1.38241 * 119.99750 * 285.96654 * 4 2 1 6 6 C 1.38239 * 119.99337 * 179.78502 * 5 4 2 7 7 C 1.38229 * 120.00286 * 0.44729 * 6 5 4 8 8 C 1.38232 * 119.99834 * 359.80306 * 7 6 5 9 9 C 1.38226 * 119.99975 * 106.23650 * 4 2 1 10 10 N 1.46902 * 109.46777 * 120.00085 * 2 1 3 11 11 C 1.46898 * 111.00162 * 307.45958 * 10 2 1 12 12 C 1.46903 * 110.99750 * 183.50605 * 10 2 1 13 13 H 1.08998 * 109.47321 * 309.56263 * 12 10 2 14 14 C 1.53002 * 109.46889 * 69.56223 * 12 10 2 15 15 C 1.52999 * 109.47030 * 189.56029 * 12 10 2 16 16 C 1.50700 * 109.47221 * 64.99983 * 15 12 10 17 17 H 1.08003 * 119.99736 * 359.97438 * 16 15 12 18 18 C 1.37883 * 119.99790 * 179.97438 * 16 15 12 19 19 N 1.31505 * 120.00222 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99546 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47169 * 90.00189 * 20 18 16 22 22 H 1.48504 * 109.46838 * 210.00083 * 20 18 16 23 23 H 1.48501 * 109.47154 * 329.99768 * 20 18 16 24 24 H 1.09003 * 109.47179 * 306.28279 * 1 2 3 25 25 H 1.09005 * 109.47255 * 66.27837 * 1 2 3 26 26 H 1.09000 * 109.47340 * 186.28009 * 1 2 3 27 27 H 1.07998 * 120.00339 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.99359 * 180.26926 * 6 5 4 29 29 H 1.07999 * 120.00224 * 179.83545 * 7 6 5 30 30 H 1.08009 * 120.00088 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.00480 * 359.97438 * 9 4 2 32 32 H 1.08998 * 109.47429 * 66.36625 * 11 10 2 33 33 H 1.08999 * 109.47578 * 186.37424 * 11 10 2 34 34 H 1.09006 * 109.47114 * 306.37468 * 11 10 2 35 35 H 1.08997 * 109.46910 * 305.06748 * 14 12 10 36 36 H 1.08999 * 109.47581 * 65.06874 * 14 12 10 37 37 H 1.08999 * 109.46786 * 185.07088 * 14 12 10 38 38 H 1.08997 * 109.46967 * 185.00474 * 15 12 10 39 39 H 1.09004 * 109.47384 * 304.99941 * 15 12 10 40 40 H 0.97002 * 120.00194 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.9522 -2.0880 -1.3143 6 6 2.4089 -2.7393 -2.4449 7 6 2.9541 -2.0139 -3.4876 8 6 3.0390 -0.6369 -3.4015 9 6 2.5782 0.0148 -2.2728 10 7 2.0196 -0.6925 1.1995 11 6 1.4087 -0.1370 2.4144 12 6 3.4857 -0.6399 1.2761 13 1 3.9111 -0.9642 0.3264 14 6 3.9298 0.7943 1.5707 15 6 3.9714 -1.5642 2.3945 16 6 3.6414 -2.9924 2.0448 17 1 3.1355 -3.2182 1.1177 18 6 3.9855 -4.0107 2.9083 19 7 4.6011 -3.7356 4.0374 20 14 3.5771 -5.7812 2.4744 21 1 4.7058 -6.3780 1.7162 22 1 3.3527 -6.5571 3.7206 23 1 2.3480 -5.8159 1.6417 24 1 -0.3634 0.6082 0.8284 25 1 -0.3634 0.4134 -0.9409 26 1 -0.3634 -1.0215 0.1124 27 1 1.5300 -2.6551 -0.4978 28 1 2.3423 -3.8151 -2.5122 29 1 3.3134 -2.5229 -4.3697 30 1 3.4646 -0.0700 -4.2164 31 1 2.6445 1.0908 -2.2057 32 1 0.3401 -0.3521 2.4148 33 1 1.8705 -0.5883 3.2925 34 1 1.5619 0.9420 2.4374 35 1 3.5083 1.4660 0.8229 36 1 3.5797 1.0870 2.5606 37 1 5.0178 0.8515 1.5385 38 1 5.0500 -1.4583 2.5105 39 1 3.4774 -1.2953 3.3283 40 1 4.8428 -4.4520 4.6451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:45 Heat of formation + Delta-G solvation = 23.065442 kcal Electronic energy + Delta-G solvation = -18720.879417 eV Core-core repulsion = 16114.314173 eV Total energy + Delta-G solvation = -2606.565243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.47503 -37.46185 -33.59928 -32.08164 -30.55037 -30.22803 -28.11441 -27.31646 -25.70690 -23.26620 -22.50465 -22.00201 -20.13837 -18.48579 -16.51098 -16.15696 -15.79437 -15.11969 -14.54035 -14.28969 -13.92893 -13.67891 -13.16005 -12.92513 -12.58806 -12.36178 -12.22206 -12.00102 -11.90311 -11.65243 -11.32828 -11.17751 -11.00150 -10.65639 -10.61676 -10.52824 -10.43643 -10.25256 -9.88175 -9.12905 -8.92254 -8.53007 -8.31948 -8.20841 -7.43549 -5.85183 -3.82128 1.70419 1.80232 3.40370 3.46586 3.50527 4.14331 4.57838 4.60698 5.03587 5.21884 5.31183 5.47425 5.51870 5.54180 5.59352 5.79540 5.84461 5.89566 5.92849 5.98274 6.01977 6.04335 6.14197 6.22235 6.35269 6.39929 6.45697 6.57142 6.65229 6.75829 6.80865 6.92555 7.02282 7.11228 7.38947 7.59132 7.73377 7.96905 8.08027 8.16968 8.63241 9.23646 9.78962 11.27029 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.008661 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.745081 B = 3232.211689 C = 4021.253949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.113 3.887 3 H 0.040 0.960 4 C -0.068 4.068 5 C -0.076 4.076 6 C -0.125 4.125 7 C -0.128 4.128 8 C -0.130 4.130 9 C -0.122 4.122 10 N -0.506 5.506 11 C 0.025 3.975 12 C 0.086 3.914 13 H 0.071 0.929 14 C -0.182 4.182 15 C 0.030 3.970 16 C -0.485 4.485 17 H 0.062 0.938 18 C 0.050 3.950 19 N -0.905 5.905 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.274 1.274 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.013 0.987 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.016 0.984 39 H 0.019 0.981 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 7.920 -10.859 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.005 3.995 3 H 0.058 0.942 4 C -0.068 4.068 5 C -0.094 4.094 6 C -0.143 4.143 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.140 4.140 10 N -0.229 5.229 11 C -0.123 4.123 12 C -0.022 4.022 13 H 0.089 0.911 14 C -0.241 4.241 15 C -0.007 4.007 16 C -0.523 4.523 17 H 0.080 0.920 18 C -0.149 4.149 19 N -0.546 5.546 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.199 1.199 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.031 0.969 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.224 7.337 -10.730 14.412 hybrid contribution 0.233 -0.166 -0.064 0.293 sum -5.992 7.171 -10.794 14.277 Atomic orbital electron populations 1.21868 0.94281 1.02716 1.00896 1.20581 0.94891 0.94635 0.89415 0.94179 1.19774 0.98153 0.94184 0.94687 1.21169 0.97307 0.94010 0.96909 1.21194 0.99272 0.99784 0.94040 1.21048 1.00480 0.94215 0.98832 1.20953 1.01254 0.94623 0.97973 1.20952 0.99759 0.99245 0.94069 1.62215 1.07336 1.53173 1.00200 1.22394 0.99413 0.96047 0.94428 1.21915 0.85581 0.92848 1.01818 0.91106 1.22500 1.01398 0.99649 1.00596 1.19205 0.95617 0.93696 0.92158 1.21179 1.35556 0.90888 1.04715 0.92019 1.24999 0.95905 0.98718 0.95312 1.69960 1.42095 1.31989 1.10563 0.86683 0.78644 0.85623 0.77567 1.21081 1.21648 1.19883 0.92578 0.92872 0.91500 0.84746 0.86461 0.86839 0.86831 0.86960 0.92406 0.90073 0.96866 0.94257 0.92934 0.92776 0.96557 0.96260 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.40 37.16 0.31 -1.59 16 2 C 0.11 1.78 2.12 -68.86 -0.15 1.64 16 3 H 0.04 0.62 6.17 -51.93 -0.32 0.30 16 4 C -0.07 -1.09 3.52 -104.63 -0.37 -1.46 16 5 C -0.08 -1.30 9.11 -39.58 -0.36 -1.66 16 6 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 7 C -0.13 -1.77 10.05 -39.59 -0.40 -2.17 16 8 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 9 C -0.12 -1.76 9.67 -39.59 -0.38 -2.14 16 10 N -0.51 -9.44 3.78 -228.29 -0.86 -10.30 16 11 C 0.03 0.44 7.80 60.06 0.47 0.91 16 12 C 0.09 1.78 2.09 -67.71 -0.14 1.64 16 13 H 0.07 1.56 6.81 -51.93 -0.35 1.21 16 14 C -0.18 -3.24 8.39 37.16 0.31 -2.93 16 15 C 0.03 0.77 4.37 -27.88 -0.12 0.65 16 16 C -0.48 -13.46 8.84 -34.44 -0.30 -13.77 16 17 H 0.06 1.70 7.54 -52.48 -0.40 1.30 16 18 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 19 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 20 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.06 0.70 6.85 -51.93 -0.36 0.34 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.13 2.53 7.70 -52.49 -0.40 2.13 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.11 1.42 7.99 -52.48 -0.42 1.00 16 32 H 0.06 0.91 6.75 -51.93 -0.35 0.55 16 33 H 0.08 1.61 5.97 -51.93 -0.31 1.30 16 34 H 0.01 0.21 6.96 -51.93 -0.36 -0.16 16 35 H 0.04 0.62 6.41 -51.93 -0.33 0.29 16 36 H 0.05 0.92 6.87 -51.93 -0.36 0.56 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.52 6.15 -51.93 -0.32 0.20 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -29.77 315.05 -8.80 -38.57 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.37 Total: 0.61 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -2.02 Total: -24.04 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.13 Total: -36.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.77 -8.80 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.631 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds