Wall clock time and date at job start Mon Mar 30 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46646 * 2 1 4 4 C 1.52997 * 109.47142 * 119.99936 * 2 1 3 5 5 C 1.50700 * 109.47265 * 294.86147 * 4 2 1 6 6 H 1.08003 * 120.00147 * 355.34288 * 5 4 2 7 7 C 1.37878 * 120.00345 * 175.34573 * 5 4 2 8 8 N 1.31514 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00104 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47443 * 59.99620 * 9 7 5 11 11 H 1.48503 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47179 * 299.99566 * 9 7 5 13 13 N 1.46899 * 109.47585 * 240.00469 * 2 1 3 14 14 C 1.46898 * 111.00311 * 187.38466 * 13 2 1 15 15 C 1.46905 * 111.00142 * 63.42514 * 13 2 1 16 16 H 1.08998 * 109.46870 * 309.14214 * 15 13 2 17 17 C 1.52998 * 109.46682 * 69.14269 * 15 13 2 18 18 C 1.50700 * 109.46801 * 189.14667 * 15 13 2 19 19 C 1.38239 * 119.99302 * 218.74776 * 18 15 13 20 20 C 1.38237 * 119.99678 * 179.78615 * 19 18 15 21 21 C 1.38236 * 120.00125 * 0.44249 * 20 19 18 22 22 C 1.38243 * 119.99829 * 359.80766 * 21 20 19 23 23 C 1.38228 * 120.00638 * 39.01449 * 18 15 13 24 24 H 1.08998 * 109.46477 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47390 * 299.99968 * 1 2 3 26 26 H 1.08996 * 109.46921 * 60.00417 * 1 2 3 27 27 H 1.09002 * 109.47028 * 174.86579 * 4 2 1 28 28 H 1.08997 * 109.47074 * 54.86397 * 4 2 1 29 29 H 0.96999 * 120.00077 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47147 * 67.31870 * 14 13 2 31 31 H 1.09003 * 109.47316 * 187.31984 * 14 13 2 32 32 H 1.08996 * 109.46664 * 307.32086 * 14 13 2 33 33 H 1.09001 * 109.46359 * 179.97438 * 17 15 13 34 34 H 1.08991 * 109.47399 * 299.99618 * 17 15 13 35 35 H 1.08998 * 109.46998 * 60.00453 * 17 15 13 36 36 H 1.07996 * 120.00206 * 359.97438 * 19 18 15 37 37 H 1.08003 * 120.00315 * 180.26544 * 20 19 18 38 38 H 1.07998 * 120.00424 * 179.83543 * 21 20 19 39 39 H 1.07997 * 119.99943 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.99601 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6443 0.0588 2.4764 6 1 1.1513 1.0142 2.3733 7 6 1.9116 -0.4471 3.7308 8 7 2.5116 -1.6106 3.8565 9 14 1.4205 0.5196 5.2519 10 1 -0.0501 0.7256 5.2541 11 1 1.8158 -0.2361 6.4677 12 1 2.1049 1.8374 5.2433 13 7 2.0198 -0.6924 -1.1994 14 6 3.4775 -0.8665 -1.1485 15 6 1.6169 0.0195 -2.4197 16 1 0.5453 0.2161 -2.3885 17 6 2.3762 1.3446 -2.5112 18 6 1.9374 -0.8275 -3.6243 19 6 2.4214 -0.2358 -4.7761 20 6 2.7196 -1.0131 -5.8796 21 6 2.5251 -2.3810 -5.8344 22 6 2.0362 -2.9720 -4.6843 23 6 1.7422 -2.1951 -3.5794 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1262 -0.8015 1.2044 28 1 1.6035 -1.7189 1.2964 29 1 2.6993 -1.9667 4.7390 30 1 3.7327 -1.5623 -0.3491 31 1 3.8297 -1.2625 -2.1010 32 1 3.9519 0.0961 -0.9576 33 1 2.0775 1.8726 -3.4168 34 1 2.1443 1.9571 -1.6400 35 1 3.4478 1.1479 -2.5424 36 1 2.5695 0.8334 -4.8127 37 1 3.1018 -0.5515 -6.7780 38 1 2.7556 -2.9880 -6.6974 39 1 1.8846 -4.0407 -4.6489 40 1 1.3603 -2.6569 -2.6808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:47 Heat of formation + Delta-G solvation = 23.578993 kcal Electronic energy + Delta-G solvation = -18200.275780 eV Core-core repulsion = 15593.732806 eV Total energy + Delta-G solvation = -2606.542974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69464 -37.59604 -33.79546 -32.10260 -30.86374 -30.10434 -28.76923 -27.22833 -25.01569 -23.82732 -22.71363 -22.11124 -20.16188 -18.46160 -16.86488 -16.63743 -15.34878 -15.11930 -14.68057 -14.50262 -14.07856 -13.89448 -13.37844 -13.14953 -12.83375 -12.64239 -12.13540 -11.80753 -11.69431 -11.61686 -11.40781 -11.32847 -10.95398 -10.85478 -10.75864 -10.72664 -10.39704 -10.21529 -9.81583 -9.21890 -9.07142 -8.76552 -8.48718 -8.31557 -7.62989 -5.98057 -3.99573 1.49627 1.56965 3.33637 3.38446 3.40392 3.93257 4.40572 4.56992 4.90174 5.07367 5.09851 5.25095 5.37636 5.41480 5.50092 5.62069 5.73490 5.79784 5.88708 5.98000 6.02215 6.11701 6.14974 6.23219 6.28674 6.37115 6.43646 6.58537 6.61005 6.68106 6.72538 6.87249 6.97435 7.14054 7.17124 7.58750 7.66459 7.83442 7.88996 8.09756 8.46086 9.06563 9.63362 11.13268 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.004802 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.303245 B = 5829.154104 C = 6053.705436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.083 3.917 3 H 0.031 0.969 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.027 3.973 15 C 0.110 3.890 16 H 0.094 0.906 17 C -0.185 4.185 18 C -0.067 4.067 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.091 4.091 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 1.346 -17.007 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.024 4.024 3 H 0.049 0.951 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.251 5.251 14 C -0.121 4.121 15 C 0.002 3.998 16 H 0.112 0.888 17 C -0.244 4.244 18 C -0.067 4.067 19 C -0.143 4.143 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.109 4.109 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.572 0.747 -16.857 16.884 hybrid contribution 0.220 1.293 0.899 1.590 sum -0.352 2.040 -15.958 16.092 Atomic orbital electron populations 1.21754 0.95475 1.01572 0.99926 1.21884 0.94900 0.95585 0.90006 0.95146 1.19201 0.96171 0.96156 0.89170 1.21153 1.38585 1.04928 0.90905 0.92832 1.24974 0.95328 0.94970 0.98975 1.69957 1.41992 1.17980 1.23364 0.86700 0.78973 0.80017 0.82549 1.20262 1.21331 1.20369 1.62315 1.12241 1.49179 1.01349 1.22350 0.87938 1.00280 1.01529 1.20644 1.00119 0.90405 0.88651 0.88845 1.22505 1.01363 0.98599 1.01893 1.19940 0.97896 0.94396 0.94482 1.21153 1.00047 0.99949 0.93141 1.21040 1.01188 0.94075 0.98279 1.21081 1.00731 0.94971 0.98098 1.21192 0.99983 0.99753 0.93519 1.21185 0.98091 0.93334 0.98287 0.92700 0.91596 0.95065 0.96546 0.95483 0.93003 0.90517 0.92781 0.95880 0.92465 0.91898 0.92169 0.86123 0.86681 0.86756 0.86421 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.89 37.16 0.33 -2.14 16 2 C 0.08 1.71 1.92 -67.71 -0.13 1.58 16 3 H 0.03 0.64 6.45 -51.93 -0.33 0.31 16 4 C 0.03 0.77 4.15 -27.88 -0.12 0.65 16 5 C -0.52 -14.30 8.32 -34.44 -0.29 -14.59 16 6 H 0.05 1.44 7.25 -52.48 -0.38 1.06 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -9.39 3.82 -228.29 -0.87 -10.27 16 14 C 0.03 0.48 7.64 60.06 0.46 0.94 16 15 C 0.11 1.66 2.57 -68.86 -0.18 1.48 16 16 H 0.09 1.42 5.99 -51.93 -0.31 1.11 16 17 C -0.18 -2.54 7.50 37.16 0.28 -2.26 16 18 C -0.07 -0.93 4.33 -104.63 -0.45 -1.39 16 19 C -0.12 -1.55 9.13 -39.58 -0.36 -1.91 16 20 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 21 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 22 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 23 C -0.09 -1.28 8.89 -39.59 -0.35 -1.63 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 1.33 7.06 -51.93 -0.37 0.96 16 26 H 0.03 0.50 6.30 -51.93 -0.33 0.18 16 27 H 0.02 0.44 6.18 -51.93 -0.32 0.12 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.08 1.50 6.56 -51.93 -0.34 1.16 16 31 H 0.05 0.87 6.70 -51.93 -0.35 0.52 16 32 H 0.02 0.40 6.90 -51.93 -0.36 0.05 16 33 H 0.06 0.66 6.65 -51.93 -0.35 0.31 16 34 H 0.06 0.93 6.59 -51.93 -0.34 0.59 16 35 H 0.06 0.84 6.59 -51.93 -0.34 0.49 16 36 H 0.12 1.33 5.99 -52.49 -0.31 1.01 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 38 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.13 2.02 7.69 -52.48 -0.40 1.62 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -29.13 308.54 -8.69 -37.82 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.08 Total: 0.58 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -2.10 Total: -23.37 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.14 Total: -36.20 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.13 -8.69 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.397 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds