Wall clock time and date at job start Mon Mar 30 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46646 * 2 1 4 4 C 1.52997 * 109.47142 * 119.99936 * 2 1 3 5 5 C 1.50700 * 109.47265 * 294.86147 * 4 2 1 6 6 H 1.08003 * 120.00147 * 355.34288 * 5 4 2 7 7 C 1.37878 * 120.00345 * 175.34573 * 5 4 2 8 8 N 1.31514 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00104 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47443 * 59.99620 * 9 7 5 11 11 H 1.48503 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47179 * 299.99566 * 9 7 5 13 13 N 1.46899 * 109.47585 * 240.00469 * 2 1 3 14 14 C 1.46898 * 111.00311 * 187.38466 * 13 2 1 15 15 C 1.46905 * 111.00142 * 63.42514 * 13 2 1 16 16 H 1.08998 * 109.46870 * 309.14214 * 15 13 2 17 17 C 1.52998 * 109.46682 * 69.14269 * 15 13 2 18 18 C 1.50700 * 109.46801 * 189.14667 * 15 13 2 19 19 C 1.38239 * 119.99302 * 218.74776 * 18 15 13 20 20 C 1.38237 * 119.99678 * 179.78615 * 19 18 15 21 21 C 1.38236 * 120.00125 * 0.44249 * 20 19 18 22 22 C 1.38243 * 119.99829 * 359.80766 * 21 20 19 23 23 C 1.38228 * 120.00638 * 39.01449 * 18 15 13 24 24 H 1.08998 * 109.46477 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47390 * 299.99968 * 1 2 3 26 26 H 1.08996 * 109.46921 * 60.00417 * 1 2 3 27 27 H 1.09002 * 109.47028 * 174.86579 * 4 2 1 28 28 H 1.08997 * 109.47074 * 54.86397 * 4 2 1 29 29 H 0.96999 * 120.00077 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47147 * 67.31870 * 14 13 2 31 31 H 1.09003 * 109.47316 * 187.31984 * 14 13 2 32 32 H 1.08996 * 109.46664 * 307.32086 * 14 13 2 33 33 H 1.09001 * 109.46359 * 179.97438 * 17 15 13 34 34 H 1.08991 * 109.47399 * 299.99618 * 17 15 13 35 35 H 1.08998 * 109.46998 * 60.00453 * 17 15 13 36 36 H 1.07996 * 120.00206 * 359.97438 * 19 18 15 37 37 H 1.08003 * 120.00315 * 180.26544 * 20 19 18 38 38 H 1.07998 * 120.00424 * 179.83543 * 21 20 19 39 39 H 1.07997 * 119.99943 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.99601 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6443 0.0588 2.4764 6 1 1.1513 1.0142 2.3733 7 6 1.9116 -0.4471 3.7308 8 7 2.5116 -1.6106 3.8565 9 14 1.4205 0.5196 5.2519 10 1 -0.0501 0.7256 5.2541 11 1 1.8158 -0.2361 6.4677 12 1 2.1049 1.8374 5.2433 13 7 2.0198 -0.6924 -1.1994 14 6 3.4775 -0.8665 -1.1485 15 6 1.6169 0.0195 -2.4197 16 1 0.5453 0.2161 -2.3885 17 6 2.3762 1.3446 -2.5112 18 6 1.9374 -0.8275 -3.6243 19 6 2.4214 -0.2358 -4.7761 20 6 2.7196 -1.0131 -5.8796 21 6 2.5251 -2.3810 -5.8344 22 6 2.0362 -2.9720 -4.6843 23 6 1.7422 -2.1951 -3.5794 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1262 -0.8015 1.2044 28 1 1.6035 -1.7189 1.2964 29 1 2.6993 -1.9667 4.7390 30 1 3.7327 -1.5623 -0.3491 31 1 3.8297 -1.2625 -2.1010 32 1 3.9519 0.0961 -0.9576 33 1 2.0775 1.8726 -3.4168 34 1 2.1443 1.9571 -1.6400 35 1 3.4478 1.1479 -2.5424 36 1 2.5695 0.8334 -4.8127 37 1 3.1018 -0.5515 -6.7780 38 1 2.7556 -2.9880 -6.6974 39 1 1.8846 -4.0407 -4.6489 40 1 1.3603 -2.6569 -2.6808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:47 Heat of formation + Delta-G solvation = 7.945287 kcal Electronic energy + Delta-G solvation = -18200.953709 eV Core-core repulsion = 15593.732806 eV Total energy + Delta-G solvation = -2607.220903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83580 -38.88652 -35.56155 -33.82206 -31.96186 -31.43495 -29.96664 -29.01465 -26.45203 -25.55349 -24.15862 -23.08103 -21.47930 -19.96426 -18.70343 -17.82119 -16.84584 -16.60598 -16.13438 -15.72946 -15.50439 -15.27809 -14.61915 -14.33525 -14.13190 -14.00732 -13.74207 -13.42386 -13.10692 -13.03099 -12.87423 -12.75866 -12.59365 -12.52943 -12.26165 -12.09027 -11.81121 -11.59444 -11.51297 -11.15106 -11.02117 -10.49943 -9.70732 -9.49127 -9.08300 -8.16521 -6.25978 0.54225 0.61968 1.40615 1.43182 1.50810 2.41762 2.93418 3.15960 3.17302 3.81892 4.10380 4.16955 4.26622 4.30636 4.35363 4.37820 4.45331 4.57324 4.64387 4.69966 4.70253 4.83329 4.84765 4.94175 5.07103 5.13939 5.21639 5.22566 5.28422 5.30907 5.44715 5.51193 5.65416 5.72572 5.77726 5.80439 5.85281 6.13888 6.22504 6.39809 6.42734 6.90138 7.41951 8.95369 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.004802 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.303245 B = 5829.154104 C = 6053.705436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.095 3.905 3 H 0.028 0.972 4 C 0.040 3.960 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.534 5.534 14 C 0.038 3.962 15 C 0.112 3.888 16 H 0.093 0.907 17 C -0.179 4.179 18 C -0.082 4.082 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.112 4.112 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.063 0.937 27 H -0.007 1.007 28 H -0.009 1.009 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 2.746 -18.932 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.013 4.013 3 H 0.046 0.954 4 C 0.002 3.998 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.257 5.257 14 C -0.110 4.110 15 C 0.004 3.996 16 H 0.111 0.889 17 C -0.237 4.237 18 C -0.082 4.082 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.130 4.130 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.011 0.989 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.869 2.157 -18.802 18.945 hybrid contribution 0.339 0.796 1.389 1.637 sum -0.530 2.953 -17.413 17.670 Atomic orbital electron populations 1.21655 0.94172 1.01234 1.00883 1.21573 0.95832 0.94669 0.89212 0.95384 1.19016 0.94481 0.94730 0.91529 1.21555 1.38286 1.05291 0.91896 0.92161 1.25899 0.95223 0.95935 1.02503 1.70105 1.43281 1.19777 1.24160 0.85575 0.79076 0.78644 0.78205 1.19139 1.21087 1.19318 1.62207 1.12164 1.49718 1.01624 1.22192 0.88086 0.99474 1.01247 1.20669 1.00217 0.91127 0.87569 0.88920 1.22443 1.00927 0.97675 1.02683 1.19863 0.99472 0.94174 0.94714 1.21349 0.99493 1.00950 0.92752 1.21417 1.00078 0.94105 0.98843 1.21441 0.99418 0.95492 0.98355 1.21400 0.99828 1.00480 0.93425 1.21130 0.99563 0.93885 0.98436 0.93674 0.92817 0.91834 0.98890 0.99027 0.92961 0.93454 0.91094 0.95992 0.89674 0.93155 0.92458 0.84537 0.83819 0.84052 0.85103 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 8.89 71.98 0.64 -4.01 16 2 C 0.09 3.97 1.92 44.92 0.09 4.06 16 3 H 0.03 1.20 6.45 -2.39 -0.02 1.18 16 4 C 0.04 2.12 4.15 29.85 0.12 2.24 16 5 C -0.53 -30.08 8.32 25.60 0.21 -29.87 16 6 H 0.06 3.26 7.25 -2.91 -0.02 3.24 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 9 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 N -0.53 -19.37 3.82 -876.19 -3.35 -22.72 16 14 C 0.04 1.39 7.64 127.69 0.98 2.36 16 15 C 0.11 3.26 2.57 44.17 0.11 3.37 16 16 H 0.09 2.68 5.99 -2.39 -0.01 2.67 16 17 C -0.18 -4.57 7.50 71.98 0.54 -4.04 16 18 C -0.08 -2.19 4.33 -19.87 -0.09 -2.27 16 19 C -0.13 -2.80 9.13 22.27 0.20 -2.59 16 20 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 23 C -0.11 -3.12 8.89 22.27 0.20 -2.92 16 24 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.05 2.16 7.06 -2.39 -0.02 2.14 16 26 H 0.06 1.99 6.30 -2.39 -0.02 1.98 16 27 H -0.01 -0.41 6.18 -2.39 -0.01 -0.42 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.05 1.97 6.56 -2.38 -0.02 1.95 16 31 H 0.07 2.30 6.70 -2.39 -0.02 2.29 16 32 H 0.02 0.78 6.90 -2.39 -0.02 0.77 16 33 H 0.08 1.69 6.65 -2.39 -0.02 1.68 16 34 H 0.05 1.41 6.59 -2.39 -0.02 1.40 16 35 H 0.06 1.50 6.59 -2.39 -0.02 1.48 16 36 H 0.14 2.50 5.99 -2.91 -0.02 2.48 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.11 3.54 7.69 -2.91 -0.02 3.52 16 Total: -1.00 -64.09 308.54 4.11 -59.98 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.01 Total: 13.72 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 4.14 Total: -40.41 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -3.06 Total: -79.76 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -64.09 4.11 -59.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.928 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds