Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 C 1.53005 * 109.47165 * 65.00306 * 3 2 1 6 6 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 7 7 N 1.46499 * 109.46840 * 174.99842 * 6 3 2 8 8 C 1.39679 * 120.00084 * 180.02562 * 7 6 3 9 9 C 1.38915 * 120.06987 * 359.72319 * 8 7 6 10 10 C 1.38104 * 119.91839 * 179.76660 * 9 8 7 11 11 C 1.38285 * 120.07657 * 0.51326 * 10 9 8 12 12 C 1.50704 * 119.92397 * 179.71690 * 11 10 9 13 13 C 1.50696 * 109.47306 * 270.02346 * 12 11 10 14 14 H 1.07992 * 120.00354 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99496 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99499 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00238 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47318 * 90.00063 * 17 15 13 19 19 H 1.48503 * 109.46924 * 209.99794 * 17 15 13 20 20 H 1.48498 * 109.47532 * 330.00080 * 17 15 13 21 21 C 1.38284 * 120.15207 * 359.74132 * 11 10 9 22 22 C 1.38104 * 120.07243 * 0.02562 * 21 11 10 23 23 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 24 24 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 26 26 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 27 27 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 28 28 H 1.09000 * 109.47443 * 59.99545 * 5 3 2 29 29 H 1.09001 * 109.47099 * 179.97438 * 5 3 2 30 30 H 1.09004 * 109.46908 * 299.99702 * 5 3 2 31 31 H 1.09002 * 109.47398 * 295.00168 * 6 3 2 32 32 H 1.09001 * 109.47194 * 55.00349 * 6 3 2 33 33 H 0.97000 * 120.00420 * 0.02562 * 7 6 3 34 34 H 1.07994 * 120.04056 * 0.02562 * 9 8 7 35 35 H 1.08005 * 119.96169 * 180.25222 * 10 9 8 36 36 H 1.09005 * 109.46778 * 30.02766 * 12 11 10 37 37 H 1.09002 * 109.46690 * 150.02109 * 12 11 10 38 38 H 0.96998 * 119.99968 * 179.97438 * 16 15 13 39 39 H 1.08004 * 119.96448 * 180.02562 * 21 11 10 40 40 H 1.07993 * 120.04027 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4443 -0.1257 7 7 4.0432 2.8238 -0.2458 8 6 5.4102 3.0803 -0.3739 9 6 6.3179 2.0288 -0.3818 10 6 7.6685 2.2856 -0.5135 11 6 8.1184 3.5883 -0.6268 12 6 9.5934 3.8650 -0.7639 13 6 10.2011 4.0396 0.6040 14 1 9.5813 3.9587 1.4846 15 6 11.5485 4.3036 0.7311 16 7 12.0787 4.4564 1.9250 17 14 12.6205 4.4442 -0.7920 18 1 12.6410 5.8552 -1.2544 19 1 14.0028 4.0100 -0.4663 20 1 12.0702 3.5793 -1.8664 21 6 7.2179 4.6377 -0.6139 22 6 5.8656 4.3877 -0.4874 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0698 1.5875 2.1492 29 1 1.9989 3.1541 1.3076 30 1 0.5489 2.1253 1.3970 31 1 4.0029 0.9836 0.7597 32 1 3.8570 0.8801 -1.0113 33 1 3.4106 3.5591 -0.2364 34 1 5.9676 1.0114 -0.2893 35 1 8.3745 1.4683 -0.5239 36 1 10.0743 3.0286 -1.2712 37 1 9.7397 4.7753 -1.3454 38 1 13.0266 4.6418 2.0145 39 1 7.5726 5.6540 -0.7030 40 1 5.1629 5.2077 -0.4770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902224906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -2.187867 kcal Electronic energy + Delta-G solvation = -17108.951087 eV Core-core repulsion = 14501.290778 eV Total energy + Delta-G solvation = -2607.660309 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.05872 -37.47958 -34.75392 -32.79985 -30.98541 -30.22099 -29.53745 -27.22315 -25.93067 -23.56925 -22.46495 -21.62838 -20.17424 -19.87063 -16.92240 -16.67670 -15.85312 -15.47993 -14.71040 -14.66338 -14.08707 -13.94525 -13.74496 -13.20599 -13.09004 -12.74554 -12.54267 -12.36141 -12.23151 -12.12284 -11.74848 -11.52583 -11.32414 -10.97659 -10.92754 -10.82058 -10.56963 -10.19297 -10.07744 -9.87294 -9.38689 -9.04020 -8.50900 -8.23546 -6.72299 -5.99962 -3.97687 2.12334 2.35971 3.33635 3.41000 3.45003 3.66172 4.48265 4.51733 4.56279 4.62754 4.67199 5.02601 5.19772 5.22965 5.32209 5.35481 5.48007 5.55917 5.58693 5.63637 5.68825 5.73714 5.77544 5.79385 6.00391 6.06608 6.11188 6.14358 6.28259 6.42997 6.68198 6.84449 7.10663 7.13287 7.23465 7.46449 7.77933 7.78210 7.86836 8.07546 8.60223 9.07129 9.61329 11.13306 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.052227 B = 0.003560 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.995747 B = 7862.793174 C = 7880.530365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.102 4.102 4 H 0.073 0.927 5 C -0.148 4.148 6 C 0.134 3.866 7 N -0.756 5.756 8 C 0.185 3.815 9 C -0.195 4.195 10 C -0.078 4.078 11 C -0.082 4.082 12 C 0.020 3.980 13 C -0.508 4.508 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.077 4.077 22 C -0.194 4.194 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.392 0.608 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.116 0.884 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.456 -6.531 -5.356 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.121 4.121 4 H 0.092 0.908 5 C -0.206 4.206 6 C 0.009 3.991 7 N -0.389 5.389 8 C 0.085 3.915 9 C -0.217 4.217 10 C -0.096 4.096 11 C -0.084 4.084 12 C -0.017 4.017 13 C -0.547 4.547 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.096 4.096 22 C -0.216 4.216 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.226 0.774 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.298 -6.706 -5.246 22.937 hybrid contribution 0.457 0.405 -0.549 0.821 sum -20.841 -6.301 -5.795 22.530 Atomic orbital electron populations 1.21810 0.95711 1.01586 1.01908 1.21501 0.96011 0.95687 1.02380 1.21368 0.94871 0.96951 0.98930 0.90819 1.21884 1.01055 1.00702 0.96920 1.21253 0.92919 0.84312 1.00599 1.44434 1.03951 1.06520 1.84029 1.17634 0.83408 0.93525 0.96883 1.20502 0.93171 0.97032 1.11000 1.20813 0.94105 0.96802 0.97907 1.20034 0.97011 0.92281 0.99039 1.18702 0.88403 0.96590 0.98043 1.21030 0.93802 1.48212 0.91605 0.90909 1.25027 0.97894 0.94801 0.95770 1.69914 1.12654 1.49503 1.22193 0.86799 0.79788 0.78851 0.84031 1.20264 1.21392 1.18919 1.20793 0.91766 0.98956 0.98067 1.20447 0.96041 0.94058 1.11090 0.92817 0.92776 0.92445 0.91751 0.91657 0.92459 0.92535 0.92501 0.92691 0.92859 0.77354 0.87266 0.86603 0.95805 0.96245 0.92751 0.86552 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.84 5.40 -26.73 -0.14 -0.98 16 3 C -0.10 -0.83 2.42 -90.62 -0.22 -1.05 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.15 -1.19 8.82 37.16 0.33 -0.86 16 6 C 0.13 1.42 4.30 -4.04 -0.02 1.40 16 7 N -0.76 -9.52 5.46 -58.63 -0.32 -9.84 16 8 C 0.19 3.03 6.65 -83.78 -0.56 2.47 16 9 C -0.19 -3.39 9.31 -39.38 -0.37 -3.75 16 10 C -0.08 -1.55 9.69 -39.61 -0.38 -1.93 16 11 C -0.08 -1.80 5.07 -104.59 -0.53 -2.33 16 12 C 0.02 0.49 4.17 -29.03 -0.12 0.37 16 13 C -0.51 -14.83 9.65 -34.44 -0.33 -15.17 16 14 H 0.07 2.33 7.98 -52.49 -0.42 1.91 16 15 C 0.07 1.95 5.47 -17.81 -0.10 1.85 16 16 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 17 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 21 C -0.08 -1.53 9.69 -39.61 -0.38 -1.92 16 22 C -0.19 -3.33 9.90 -39.38 -0.39 -3.72 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 7.18 -51.93 -0.37 0.11 16 30 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 31 H 0.05 0.63 7.94 -51.93 -0.41 0.21 16 32 H 0.05 0.58 7.96 -51.93 -0.41 0.16 16 33 H 0.39 4.29 7.67 -40.82 -0.31 3.98 16 34 H 0.11 1.66 6.73 -52.49 -0.35 1.30 16 35 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 36 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 37 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.12 2.22 8.06 -52.48 -0.42 1.79 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -31.36 322.44 -8.91 -40.27 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.70 Total: 1.20 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -2.86 Total: -26.21 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.45 Total: -37.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.36 -8.91 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902224906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.087 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds