Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.08990 * 109.47355 * 304.99798 * 3 2 1 5 5 C 1.53005 * 109.47165 * 65.00306 * 3 2 1 6 6 C 1.53000 * 109.46776 * 184.99808 * 3 2 1 7 7 N 1.46499 * 109.46840 * 174.99842 * 6 3 2 8 8 C 1.39679 * 120.00084 * 180.02562 * 7 6 3 9 9 C 1.38915 * 120.06987 * 359.72319 * 8 7 6 10 10 C 1.38104 * 119.91839 * 179.76660 * 9 8 7 11 11 C 1.38285 * 120.07657 * 0.51326 * 10 9 8 12 12 C 1.50704 * 119.92397 * 179.71690 * 11 10 9 13 13 C 1.50696 * 109.47306 * 270.02346 * 12 11 10 14 14 H 1.07992 * 120.00354 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99496 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99499 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00238 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47318 * 90.00063 * 17 15 13 19 19 H 1.48503 * 109.46924 * 209.99794 * 17 15 13 20 20 H 1.48498 * 109.47532 * 330.00080 * 17 15 13 21 21 C 1.38284 * 120.15207 * 359.74132 * 11 10 9 22 22 C 1.38104 * 120.07243 * 0.02562 * 21 11 10 23 23 H 1.09001 * 109.47215 * 59.99942 * 1 2 3 24 24 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47362 * 299.99912 * 1 2 3 26 26 H 1.08993 * 109.46856 * 239.99957 * 2 1 3 27 27 H 1.09001 * 109.46973 * 119.99563 * 2 1 3 28 28 H 1.09000 * 109.47443 * 59.99545 * 5 3 2 29 29 H 1.09001 * 109.47099 * 179.97438 * 5 3 2 30 30 H 1.09004 * 109.46908 * 299.99702 * 5 3 2 31 31 H 1.09002 * 109.47398 * 295.00168 * 6 3 2 32 32 H 1.09001 * 109.47194 * 55.00349 * 6 3 2 33 33 H 0.97000 * 120.00420 * 0.02562 * 7 6 3 34 34 H 1.07994 * 120.04056 * 0.02562 * 9 8 7 35 35 H 1.08005 * 119.96169 * 180.25222 * 10 9 8 36 36 H 1.09005 * 109.46778 * 30.02766 * 12 11 10 37 37 H 1.09002 * 109.46690 * 150.02109 * 12 11 10 38 38 H 0.96998 * 119.99968 * 179.97438 * 16 15 13 39 39 H 1.08004 * 119.96448 * 180.02562 * 21 11 10 40 40 H 1.07993 * 120.04027 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4443 -0.1257 7 7 4.0432 2.8238 -0.2458 8 6 5.4102 3.0803 -0.3739 9 6 6.3179 2.0288 -0.3818 10 6 7.6685 2.2856 -0.5135 11 6 8.1184 3.5883 -0.6268 12 6 9.5934 3.8650 -0.7639 13 6 10.2011 4.0396 0.6040 14 1 9.5813 3.9587 1.4846 15 6 11.5485 4.3036 0.7311 16 7 12.0787 4.4564 1.9250 17 14 12.6205 4.4442 -0.7920 18 1 12.6410 5.8552 -1.2544 19 1 14.0028 4.0100 -0.4663 20 1 12.0702 3.5793 -1.8664 21 6 7.2179 4.6377 -0.6139 22 6 5.8656 4.3877 -0.4874 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0698 1.5875 2.1492 29 1 1.9989 3.1541 1.3076 30 1 0.5489 2.1253 1.3970 31 1 4.0029 0.9836 0.7597 32 1 3.8570 0.8801 -1.0113 33 1 3.4106 3.5591 -0.2364 34 1 5.9676 1.0114 -0.2893 35 1 8.3745 1.4683 -0.5239 36 1 10.0743 3.0286 -1.2712 37 1 9.7397 4.7753 -1.3454 38 1 13.0266 4.6418 2.0145 39 1 7.5726 5.6540 -0.7030 40 1 5.1629 5.2077 -0.4770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902224906.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -19.755681 kcal Electronic energy + Delta-G solvation = -17109.712884 eV Core-core repulsion = 14501.290778 eV Total energy + Delta-G solvation = -2608.422107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37527 -38.40067 -36.02521 -34.73381 -32.48019 -31.66978 -30.54971 -28.48498 -27.12890 -24.63365 -24.10388 -22.92444 -21.41017 -20.89280 -18.92881 -18.13175 -16.95321 -16.53561 -16.20940 -15.81383 -15.45195 -15.03457 -14.86511 -14.64543 -14.24116 -14.19294 -13.93215 -13.70849 -13.39072 -13.19199 -12.89349 -12.83927 -12.42859 -12.37318 -11.97179 -11.75236 -11.66674 -11.59325 -11.53155 -11.44097 -11.41675 -10.76203 -10.54682 -9.68801 -8.28111 -8.04708 -6.31407 0.66922 0.87905 1.37257 1.39220 1.51923 2.37716 2.60567 3.06798 3.13167 3.81896 3.94629 4.02538 4.13651 4.23631 4.44389 4.45508 4.57611 4.63951 4.70750 4.74633 4.75853 4.78243 4.91897 4.97907 5.10459 5.12645 5.14170 5.16946 5.22315 5.23457 5.35343 5.48983 5.52444 5.52987 5.61513 5.69494 6.05654 6.16175 6.32091 6.57920 6.75484 6.97343 7.31857 8.89578 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.052227 B = 0.003560 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.995747 B = 7862.793174 C = 7880.530365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.093 4.093 4 H 0.080 0.920 5 C -0.148 4.148 6 C 0.129 3.871 7 N -0.743 5.743 8 C 0.197 3.803 9 C -0.198 4.198 10 C -0.089 4.089 11 C -0.124 4.124 12 C 0.028 3.972 13 C -0.517 4.517 14 H 0.025 0.975 15 C 0.004 3.996 16 N -0.953 5.953 17 Si 0.953 3.047 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.247 1.247 21 C -0.088 4.088 22 C -0.195 4.195 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.404 0.596 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.267 0.733 39 H 0.116 0.884 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.398 -6.911 -7.005 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.112 4.112 4 H 0.099 0.901 5 C -0.205 4.205 6 C 0.005 3.995 7 N -0.375 5.375 8 C 0.095 3.905 9 C -0.221 4.221 10 C -0.108 4.108 11 C -0.126 4.126 12 C -0.010 4.010 13 C -0.555 4.555 14 H 0.043 0.957 15 C -0.193 4.193 16 N -0.593 5.593 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.170 1.170 21 C -0.107 4.107 22 C -0.217 4.217 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.134 0.866 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.300 -7.094 -6.898 25.314 hybrid contribution 0.875 0.477 0.066 0.998 sum -22.425 -6.617 -6.831 24.359 Atomic orbital electron populations 1.21799 0.94886 1.02056 1.02142 1.21496 0.96692 0.94881 1.02430 1.21303 0.92874 0.97797 0.99211 0.90147 1.21886 1.01914 1.00188 0.96541 1.21424 0.94680 0.82942 1.00428 1.44521 1.02583 1.08048 1.82365 1.17750 0.84980 0.93013 0.94778 1.20683 0.92258 0.98568 1.10586 1.20884 0.95478 0.96050 0.98363 1.19917 0.95759 0.93890 1.02994 1.18535 0.90531 0.96676 0.95211 1.21266 0.93811 1.47990 0.92405 0.95696 1.26033 0.99506 0.94245 0.99493 1.70074 1.13326 1.50960 1.24983 0.85614 0.77425 0.79693 0.79680 1.18957 1.20802 1.17022 1.20890 0.92916 0.98468 0.98420 1.20684 0.95376 0.95430 1.10214 0.92525 0.92270 0.92255 0.91552 0.91843 0.93181 0.93020 0.91205 0.93289 0.92550 0.76042 0.85038 0.86862 0.95665 0.95701 0.92448 0.86599 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 71.98 0.70 -0.81 16 2 C -0.12 -1.38 5.40 30.60 0.17 -1.21 16 3 C -0.09 -1.25 2.42 -10.79 -0.03 -1.28 16 4 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.15 -2.01 8.82 71.98 0.64 -1.37 16 6 C 0.13 2.40 4.30 86.38 0.37 2.77 16 7 N -0.74 -16.63 5.46 -339.41 -1.85 -18.48 16 8 C 0.20 6.05 6.65 38.21 0.25 6.31 16 9 C -0.20 -6.65 9.31 22.40 0.21 -6.45 16 10 C -0.09 -3.58 9.69 22.25 0.22 -3.36 16 11 C -0.12 -5.52 5.07 -19.84 -0.10 -5.62 16 12 C 0.03 1.39 4.17 29.10 0.12 1.51 16 13 C -0.52 -31.28 9.65 25.60 0.25 -31.03 16 14 H 0.02 1.68 7.98 -2.91 -0.02 1.66 16 15 C 0.00 0.21 5.47 84.66 0.46 0.68 16 16 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 17 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 18 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 21 C -0.09 -3.49 9.69 22.25 0.22 -3.28 16 22 C -0.19 -6.35 9.90 22.40 0.22 -6.13 16 23 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.57 6.57 -2.39 -0.02 0.55 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.75 7.18 -2.39 -0.02 0.73 16 30 H 0.07 0.78 6.57 -2.38 -0.02 0.76 16 31 H 0.05 1.00 7.94 -2.39 -0.02 0.99 16 32 H 0.06 1.06 7.96 -2.39 -0.02 1.04 16 33 H 0.40 7.50 7.67 -92.71 -0.71 6.79 16 34 H 0.13 3.73 6.73 -2.91 -0.02 3.71 16 35 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.03 1.23 7.14 -2.38 -0.02 1.22 16 37 H 0.02 1.20 7.51 -2.39 -0.02 1.18 16 38 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -69.36 322.44 4.25 -65.11 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.23 Total: 16.53 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 3.69 Total: -49.27 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.55 Total: -79.60 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -69.36 4.25 -65.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902224906.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.352 kcal (2) G-P(sol) polarization free energy of solvation -69.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds