Wall clock time and date at job start Mon Mar 30 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 H 1.08999 * 109.47597 * 55.00238 * 3 2 1 5 5 C 1.52995 * 109.47129 * 294.99631 * 3 2 1 6 6 C 1.53001 * 109.46632 * 174.99931 * 3 2 1 7 7 N 1.46508 * 109.46882 * 184.99712 * 6 3 2 8 8 C 1.39677 * 119.99667 * 180.02562 * 7 6 3 9 9 C 1.38912 * 120.07048 * 179.97438 * 8 7 6 10 10 C 1.38099 * 119.92393 * 180.02562 * 9 8 7 11 11 C 1.38285 * 120.07607 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.92896 * 179.71980 * 11 10 9 13 13 C 1.50701 * 109.47001 * 89.99816 * 12 11 10 14 14 H 1.07996 * 120.00240 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00255 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99682 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00430 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47098 * 89.99898 * 17 15 13 19 19 H 1.48495 * 109.47310 * 209.99828 * 17 15 13 20 20 H 1.48501 * 109.46968 * 330.00112 * 17 15 13 21 21 C 1.38288 * 120.14912 * 359.97438 * 11 10 9 22 22 C 1.38107 * 120.07582 * 0.02562 * 21 11 10 23 23 H 1.09007 * 109.46956 * 300.00232 * 1 2 3 24 24 H 1.09001 * 109.46976 * 59.99745 * 1 2 3 25 25 H 1.09001 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46816 * 239.99834 * 2 1 3 27 27 H 1.09003 * 109.46535 * 119.99634 * 2 1 3 28 28 H 1.08999 * 109.47377 * 300.00742 * 5 3 2 29 29 H 1.09004 * 109.47179 * 60.00506 * 5 3 2 30 30 H 1.09001 * 109.47124 * 180.02562 * 5 3 2 31 31 H 1.08997 * 109.47206 * 64.99885 * 6 3 2 32 32 H 1.09000 * 109.47461 * 304.99911 * 6 3 2 33 33 H 0.96993 * 119.99599 * 359.97438 * 7 6 3 34 34 H 1.08001 * 120.03609 * 0.02562 * 9 8 7 35 35 H 1.07995 * 119.96581 * 179.97438 * 10 9 8 36 36 H 1.08994 * 109.47500 * 209.99743 * 12 11 10 37 37 H 1.09002 * 109.47378 * 330.00236 * 12 11 10 38 38 H 0.97003 * 120.00083 * 179.97438 * 16 15 13 39 39 H 1.07997 * 119.96260 * 179.97438 * 21 11 10 40 40 H 1.07996 * 120.03841 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4442 0.1257 7 7 4.0433 2.8238 0.2458 8 6 5.4105 3.0801 0.3728 9 6 5.8659 4.3876 0.4862 10 6 7.2183 4.6376 0.6112 11 6 8.1189 3.5883 0.6230 12 6 9.5944 3.8653 0.7532 13 6 9.9762 3.8792 2.2110 14 1 9.2256 3.7044 2.9675 15 6 11.2839 4.1150 2.5790 16 7 12.1981 4.3273 1.6577 17 14 11.7573 4.1315 4.3859 18 1 12.1464 2.7620 4.8082 19 1 12.9014 5.0560 4.5894 20 1 10.6004 4.5895 5.1965 21 6 7.6689 2.2855 0.5104 22 6 6.3178 2.0284 0.3851 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0699 1.5874 -2.1491 29 1 0.5490 2.1252 -1.3969 30 1 1.9990 3.1540 -1.3075 31 1 4.0029 0.9835 -0.7596 32 1 3.8571 0.8799 1.0113 33 1 3.4108 3.5590 0.2362 34 1 5.1631 5.2076 0.4766 35 1 7.5731 5.6538 0.6989 36 1 10.1571 3.0871 0.2377 37 1 9.8229 4.8340 0.3086 38 1 13.1181 4.4935 1.9166 39 1 8.3749 1.4683 0.5195 40 1 5.9670 1.0107 0.2976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902224907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:59 Heat of formation + Delta-G solvation = -6.189641 kcal Electronic energy + Delta-G solvation = -17078.936511 eV Core-core repulsion = 14471.102672 eV Total energy + Delta-G solvation = -2607.833839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99777 -37.44227 -34.69096 -32.86063 -30.81048 -30.14617 -29.30913 -27.04257 -25.73521 -23.58661 -22.67340 -21.65464 -20.15987 -19.90529 -16.88015 -16.20600 -15.81567 -15.44867 -14.76431 -14.64541 -14.09724 -13.99327 -13.66651 -13.18266 -12.89503 -12.70601 -12.53488 -12.31069 -12.24113 -12.01174 -11.61148 -11.21844 -11.16705 -10.95412 -10.90220 -10.81655 -10.60454 -10.48490 -10.04249 -9.71270 -9.36949 -8.95331 -8.34346 -8.17554 -6.69856 -5.94234 -3.98720 2.18322 2.43291 3.35105 3.41011 3.45774 3.69671 4.47335 4.52982 4.57709 4.67727 4.73725 5.03208 5.20488 5.23415 5.36271 5.38177 5.49253 5.60337 5.62801 5.65331 5.68817 5.74510 5.78920 5.79274 6.06438 6.10480 6.12917 6.20728 6.38578 6.51818 6.77557 6.92346 7.35964 7.36182 7.50329 7.66256 7.91801 8.01240 8.03072 8.12686 8.45093 9.07269 9.64563 11.14007 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.044577 B = 0.003576 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.968866 B = 7827.771335 C = 8051.694651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.103 4.103 4 H 0.074 0.926 5 C -0.148 4.148 6 C 0.135 3.865 7 N -0.757 5.757 8 C 0.182 3.818 9 C -0.195 4.195 10 C -0.080 4.080 11 C -0.085 4.085 12 C 0.053 3.947 13 C -0.507 4.507 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.081 4.081 22 C -0.195 4.195 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.392 0.608 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.278 -6.029 -4.713 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.122 4.122 4 H 0.092 0.908 5 C -0.205 4.205 6 C 0.010 3.990 7 N -0.390 5.390 8 C 0.082 3.918 9 C -0.217 4.217 10 C -0.099 4.099 11 C -0.087 4.087 12 C 0.016 3.984 13 C -0.546 4.546 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.100 4.100 22 C -0.217 4.217 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.226 0.774 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.101 -6.197 -4.749 22.499 hybrid contribution 0.124 0.284 1.054 1.098 sum -20.977 -5.913 -3.695 22.105 Atomic orbital electron populations 1.21812 0.95722 1.01580 1.01903 1.21501 0.95999 0.95700 1.02375 1.21369 0.94940 0.96941 0.98914 0.90786 1.21876 1.01037 1.00657 0.96910 1.21238 0.92836 0.84396 1.00547 1.44417 1.03962 1.06424 1.84242 1.17615 0.83333 0.93529 0.97330 1.20456 0.96066 0.94010 1.11155 1.20821 0.91755 0.99153 0.98134 1.20446 0.98580 0.92095 0.97548 1.18243 0.85510 0.97503 0.97127 1.21146 0.93628 1.48084 0.91720 0.92571 1.25023 0.96591 0.95446 0.97435 1.69964 1.02005 1.49045 1.32596 0.86570 0.78065 0.77852 0.85413 1.20675 1.21251 1.19857 1.20846 0.94066 0.96904 0.98151 1.20508 0.93242 0.96885 1.11115 0.92790 0.92479 0.92779 0.91707 0.91711 0.92539 0.92520 0.92559 0.92818 0.92853 0.77423 0.87516 0.86637 0.95718 0.95702 0.92986 0.86695 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.16 0.36 -0.61 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -1.00 16 3 C -0.10 -0.85 2.42 -90.62 -0.22 -1.07 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -1.15 8.82 37.16 0.33 -0.82 16 6 C 0.13 1.45 4.30 -4.04 -0.02 1.43 16 7 N -0.76 -9.72 5.46 -58.63 -0.32 -10.04 16 8 C 0.18 3.03 6.65 -83.79 -0.56 2.47 16 9 C -0.19 -3.42 9.90 -39.38 -0.39 -3.81 16 10 C -0.08 -1.63 9.69 -39.62 -0.38 -2.02 16 11 C -0.09 -1.93 5.07 -104.59 -0.53 -2.46 16 12 C 0.05 1.41 5.10 -29.04 -0.15 1.27 16 13 C -0.51 -14.64 9.09 -34.44 -0.31 -14.95 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.08 -1.66 9.69 -39.61 -0.38 -2.05 16 22 C -0.20 -3.47 9.31 -39.38 -0.37 -3.83 16 23 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 24 H 0.06 0.35 6.56 -51.93 -0.34 0.00 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 30 H 0.06 0.46 7.18 -51.93 -0.37 0.09 16 31 H 0.05 0.60 7.95 -51.93 -0.41 0.19 16 32 H 0.05 0.61 7.95 -51.93 -0.41 0.20 16 33 H 0.39 4.38 7.67 -40.82 -0.31 4.07 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.11 1.67 6.73 -52.49 -0.35 1.32 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -30.57 326.04 -9.29 -39.86 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.73 Total: 0.56 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -2.87 Total: -25.92 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.42 Total: -36.39 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.57 -9.29 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902224907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.669 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds