Wall clock time and date at job start Mon Mar 30 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46955 * 2 1 4 4 H 1.08999 * 109.47597 * 55.00238 * 3 2 1 5 5 C 1.52995 * 109.47129 * 294.99631 * 3 2 1 6 6 C 1.53001 * 109.46632 * 174.99931 * 3 2 1 7 7 N 1.46508 * 109.46882 * 184.99712 * 6 3 2 8 8 C 1.39677 * 119.99667 * 180.02562 * 7 6 3 9 9 C 1.38912 * 120.07048 * 179.97438 * 8 7 6 10 10 C 1.38099 * 119.92393 * 180.02562 * 9 8 7 11 11 C 1.38285 * 120.07607 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.92896 * 179.71980 * 11 10 9 13 13 C 1.50701 * 109.47001 * 89.99816 * 12 11 10 14 14 H 1.07996 * 120.00240 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00255 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99682 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00430 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47098 * 89.99898 * 17 15 13 19 19 H 1.48495 * 109.47310 * 209.99828 * 17 15 13 20 20 H 1.48501 * 109.46968 * 330.00112 * 17 15 13 21 21 C 1.38288 * 120.14912 * 359.97438 * 11 10 9 22 22 C 1.38107 * 120.07582 * 0.02562 * 21 11 10 23 23 H 1.09007 * 109.46956 * 300.00232 * 1 2 3 24 24 H 1.09001 * 109.46976 * 59.99745 * 1 2 3 25 25 H 1.09001 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46816 * 239.99834 * 2 1 3 27 27 H 1.09003 * 109.46535 * 119.99634 * 2 1 3 28 28 H 1.08999 * 109.47377 * 300.00742 * 5 3 2 29 29 H 1.09004 * 109.47179 * 60.00506 * 5 3 2 30 30 H 1.09001 * 109.47124 * 180.02562 * 5 3 2 31 31 H 1.08997 * 109.47206 * 64.99885 * 6 3 2 32 32 H 1.09000 * 109.47461 * 304.99911 * 6 3 2 33 33 H 0.96993 * 119.99599 * 359.97438 * 7 6 3 34 34 H 1.08001 * 120.03609 * 0.02562 * 9 8 7 35 35 H 1.07995 * 119.96581 * 179.97438 * 10 9 8 36 36 H 1.08994 * 109.47500 * 209.99743 * 12 11 10 37 37 H 1.09002 * 109.47378 * 330.00236 * 12 11 10 38 38 H 0.97003 * 120.00083 * 179.97438 * 16 15 13 39 39 H 1.07997 * 119.96260 * 179.97438 * 21 11 10 40 40 H 1.07996 * 120.03841 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4442 0.1257 7 7 4.0433 2.8238 0.2458 8 6 5.4105 3.0801 0.3728 9 6 5.8659 4.3876 0.4862 10 6 7.2183 4.6376 0.6112 11 6 8.1189 3.5883 0.6230 12 6 9.5944 3.8653 0.7532 13 6 9.9762 3.8792 2.2110 14 1 9.2256 3.7044 2.9675 15 6 11.2839 4.1150 2.5790 16 7 12.1981 4.3273 1.6577 17 14 11.7573 4.1315 4.3859 18 1 12.1464 2.7620 4.8082 19 1 12.9014 5.0560 4.5894 20 1 10.6004 4.5895 5.1965 21 6 7.6689 2.2855 0.5104 22 6 6.3178 2.0284 0.3851 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0699 1.5874 -2.1491 29 1 0.5490 2.1252 -1.3969 30 1 1.9990 3.1540 -1.3075 31 1 4.0029 0.9835 -0.7596 32 1 3.8571 0.8799 1.0113 33 1 3.4108 3.5590 0.2362 34 1 5.1631 5.2076 0.4766 35 1 7.5731 5.6538 0.6989 36 1 10.1571 3.0871 0.2377 37 1 9.8229 4.8340 0.3086 38 1 13.1181 4.4935 1.9166 39 1 8.3749 1.4683 0.5195 40 1 5.9670 1.0107 0.2976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902224907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:58 Heat of formation + Delta-G solvation = -22.310636 kcal Electronic energy + Delta-G solvation = -17079.635570 eV Core-core repulsion = 14471.102672 eV Total energy + Delta-G solvation = -2608.532898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.35765 -38.38356 -36.01938 -34.76646 -32.20348 -31.64038 -30.39544 -28.29132 -27.08457 -24.88047 -24.19562 -22.95868 -21.46042 -20.88107 -18.48265 -18.09992 -16.93952 -16.64578 -16.23607 -15.75071 -15.41571 -14.98559 -14.82108 -14.50983 -14.23592 -14.18318 -13.95110 -13.46446 -13.22480 -13.17555 -12.84405 -12.80213 -12.53908 -12.40884 -12.34206 -11.68711 -11.63324 -11.58056 -11.50130 -11.40491 -11.33336 -10.58033 -10.53515 -9.68086 -8.29606 -7.94237 -6.30070 0.67577 0.89610 1.39836 1.41316 1.53010 2.41828 2.61710 3.12797 3.16496 3.82871 3.95761 4.03715 4.15058 4.24664 4.46143 4.50528 4.58534 4.64991 4.73354 4.76416 4.77697 4.80144 4.93475 5.02202 5.12697 5.17273 5.20113 5.22461 5.24027 5.37874 5.40958 5.49996 5.53318 5.56349 5.70543 5.81580 6.04999 6.23783 6.25621 6.59811 6.83342 6.98948 7.38242 8.92308 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.044577 B = 0.003576 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.968866 B = 7827.771335 C = 8051.694651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.094 4.094 4 H 0.077 0.923 5 C -0.147 4.147 6 C 0.130 3.870 7 N -0.743 5.743 8 C 0.197 3.803 9 C -0.192 4.192 10 C -0.089 4.089 11 C -0.124 4.124 12 C 0.063 3.937 13 C -0.526 4.526 14 H 0.052 0.948 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.090 4.090 22 C -0.195 4.195 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.404 0.596 34 H 0.139 0.861 35 H 0.111 0.889 36 H -0.003 1.003 37 H -0.002 1.002 38 H 0.265 0.735 39 H 0.109 0.891 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.967 -6.564 -3.885 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.113 4.113 4 H 0.096 0.904 5 C -0.204 4.204 6 C 0.005 3.995 7 N -0.375 5.375 8 C 0.094 3.906 9 C -0.214 4.214 10 C -0.108 4.108 11 C -0.126 4.126 12 C 0.026 3.974 13 C -0.564 4.564 14 H 0.070 0.930 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.109 4.109 22 C -0.218 4.218 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.240 0.760 34 H 0.156 0.844 35 H 0.129 0.871 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.842 -6.739 -3.931 25.086 hybrid contribution 0.823 0.410 0.722 1.169 sum -23.019 -6.330 -3.209 24.088 Atomic orbital electron populations 1.21801 0.94910 1.02042 1.02132 1.21497 0.96672 0.94917 1.02422 1.21303 0.92882 0.97775 0.99312 0.90450 1.21873 1.01883 1.00219 0.96409 1.21421 0.94678 0.82933 1.00424 1.44504 1.02500 1.08028 1.82486 1.17710 0.84963 0.92913 0.94979 1.20668 0.95137 0.95501 1.10086 1.20833 0.92991 0.98341 0.98642 1.20135 0.96465 0.93985 1.01976 1.17978 0.88601 0.94968 0.95806 1.21457 0.93992 1.48250 0.92712 0.92958 1.25966 0.96439 0.94754 1.02506 1.70093 1.02475 1.49709 1.35038 0.85432 0.77939 0.78314 0.79289 1.19667 1.20397 1.19050 1.20835 0.95540 0.95795 0.98724 1.20666 0.92051 0.98545 1.10503 0.92699 0.92099 0.92284 0.91603 0.91810 0.92899 0.91292 0.92923 0.92826 0.93021 0.76037 0.84365 0.87110 0.98475 0.98393 0.92645 0.87307 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 71.98 0.70 -0.82 16 2 C -0.12 -1.38 5.40 30.60 0.17 -1.21 16 3 C -0.09 -1.26 2.42 -10.80 -0.03 -1.28 16 4 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.15 -1.85 8.82 71.98 0.63 -1.21 16 6 C 0.13 2.40 4.30 86.38 0.37 2.77 16 7 N -0.74 -16.64 5.46 -339.40 -1.85 -18.49 16 8 C 0.20 6.09 6.65 38.21 0.25 6.35 16 9 C -0.19 -6.37 9.90 22.40 0.22 -6.14 16 10 C -0.09 -3.69 9.69 22.25 0.22 -3.47 16 11 C -0.12 -5.83 5.07 -19.84 -0.10 -5.93 16 12 C 0.06 3.59 5.10 29.10 0.15 3.74 16 13 C -0.53 -31.43 9.09 25.60 0.23 -31.20 16 14 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 15 C 0.00 0.05 5.46 84.65 0.46 0.51 16 16 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 17 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C -0.09 -3.77 9.69 22.25 0.22 -3.55 16 22 C -0.20 -6.65 9.31 22.40 0.21 -6.44 16 23 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 24 H 0.06 0.56 6.56 -2.39 -0.02 0.55 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.72 6.57 -2.39 -0.02 0.70 16 30 H 0.05 0.70 7.18 -2.39 -0.02 0.69 16 31 H 0.05 1.04 7.95 -2.39 -0.02 1.02 16 32 H 0.05 1.02 7.95 -2.39 -0.02 1.00 16 33 H 0.40 7.49 7.67 -92.71 -0.71 6.78 16 34 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 35 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 37 H 0.00 -0.14 8.08 -2.39 -0.02 -0.15 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 40 H 0.13 3.79 6.73 -2.91 -0.02 3.77 16 Total: -1.00 -67.27 326.04 4.44 -62.83 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.29 Total: 13.66 kcal Atomic # 6 Polarization: -51.60 SS G_CDS: 3.70 Total: -47.90 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -1.57 Total: -76.25 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.27 4.44 -62.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902224907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.517 kcal (2) G-P(sol) polarization free energy of solvation -67.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds