Wall clock time and date at job start Mon Mar 30 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.39668 * 120.00181 * 180.02562 * 6 5 4 8 8 C 1.38907 * 120.07584 * 359.71907 * 7 6 5 9 9 C 1.38108 * 119.92754 * 179.77093 * 8 7 6 10 10 C 1.38283 * 120.07138 * 0.50866 * 9 8 7 11 11 C 1.50700 * 119.92567 * 179.72344 * 10 9 8 12 12 C 1.50699 * 109.47004 * 270.02519 * 11 10 9 13 13 H 1.08005 * 120.00240 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00044 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00216 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99929 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47154 * 90.00290 * 16 14 12 18 18 H 1.48501 * 109.47175 * 210.00420 * 16 14 12 19 19 H 1.48499 * 109.47259 * 329.99815 * 16 14 12 20 20 C 1.38292 * 120.15211 * 359.74911 * 10 9 8 21 21 C 1.38103 * 120.06781 * 359.97438 * 20 10 9 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.09000 * 109.47380 * 59.99240 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46509 * 240.00429 * 2 1 3 26 26 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 28 28 H 1.09004 * 109.47261 * 300.00303 * 3 2 1 29 29 H 1.09001 * 109.46997 * 60.00426 * 4 3 2 30 30 H 1.08996 * 109.47452 * 300.00000 * 4 3 2 31 31 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 32 32 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 33 33 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.03686 * 0.02562 * 8 7 6 35 35 H 1.07998 * 119.96672 * 180.25929 * 9 8 7 36 36 H 1.08997 * 109.47151 * 30.02383 * 11 10 9 37 37 H 1.08997 * 109.47346 * 150.02750 * 11 10 9 38 38 H 0.96998 * 119.99949 * 180.02562 * 15 14 12 39 39 H 1.07994 * 119.96476 * 180.02562 * 20 10 9 40 40 H 1.08003 * 120.03201 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 7 5.5451 2.8850 0.0000 7 6 6.2434 4.0945 0.0000 8 6 5.5505 5.2984 -0.0059 9 6 6.2441 6.4927 -0.0011 10 6 7.6269 6.4909 -0.0011 11 6 8.3805 7.7960 -0.0021 12 6 8.6311 8.2301 -1.4233 13 1 8.2803 7.6216 -2.2437 14 6 9.3093 9.4036 -1.6762 15 7 9.5276 9.7828 -2.9165 16 14 9.9168 10.4557 -0.2572 17 1 11.2900 10.0341 0.1191 18 1 9.9325 11.8821 -0.6700 19 1 9.0106 10.2874 0.9071 20 6 8.3200 5.2941 -0.0006 21 6 7.6325 4.0964 0.0004 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.9337 0.9286 -0.8892 30 1 3.9330 0.9288 0.8908 31 1 3.7163 3.3993 0.8895 32 1 3.7170 3.3983 -0.8904 33 1 6.0300 2.0449 0.0000 34 1 4.4705 5.3006 -0.0101 35 1 5.7060 7.4291 -0.0014 36 1 7.7916 8.5559 0.5114 37 1 9.3331 7.6659 0.5114 38 1 10.0051 10.6082 -3.0944 39 1 9.3999 5.2962 -0.0001 40 1 8.1743 3.1621 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902224980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:20 Heat of formation + Delta-G solvation = -6.892098 kcal Electronic energy + Delta-G solvation = -16730.198797 eV Core-core repulsion = 14122.334497 eV Total energy + Delta-G solvation = -2607.864300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.96160 -36.91840 -35.09494 -32.99576 -31.62141 -30.22181 -29.93388 -27.00826 -25.31704 -22.82034 -22.46239 -21.39361 -21.05988 -19.87188 -16.81792 -16.67646 -16.19968 -15.67208 -14.74350 -14.64892 -14.09848 -14.02874 -13.62399 -13.35177 -13.04958 -12.95218 -12.72807 -12.33905 -12.15013 -11.89775 -11.58684 -11.47715 -11.38188 -11.21881 -10.95853 -10.85517 -10.57708 -10.19405 -10.08496 -9.87525 -9.39066 -9.04809 -8.50955 -8.24066 -6.73544 -5.99946 -3.97718 2.11794 2.35230 3.33606 3.40963 3.44917 3.63453 4.48183 4.49146 4.56987 4.61844 4.74145 4.92341 5.01701 5.24748 5.32221 5.36121 5.41236 5.52038 5.53301 5.56255 5.61289 5.73317 5.74231 5.84974 5.99781 6.01387 6.03447 6.12872 6.27748 6.42266 6.67746 6.83801 7.10358 7.13002 7.22905 7.45556 7.77567 7.77775 7.86157 8.06734 8.60089 9.07002 9.61292 11.13249 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.052571 B = 0.003181 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.488893 B = 8799.558559 C = 8946.559864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.130 4.130 5 C 0.129 3.871 6 N -0.759 5.759 7 C 0.184 3.816 8 C -0.194 4.194 9 C -0.078 4.078 10 C -0.082 4.082 11 C 0.020 3.980 12 C -0.508 4.508 13 H 0.073 0.927 14 C 0.066 3.934 15 N -0.903 5.903 16 Si 0.878 3.122 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.077 4.077 21 C -0.194 4.194 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.393 0.607 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.263 0.737 39 H 0.117 0.883 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.853 -17.858 7.796 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.168 4.168 5 C 0.005 3.995 6 N -0.392 5.392 7 C 0.084 3.916 8 C -0.217 4.217 9 C -0.096 4.096 10 C -0.083 4.083 11 C -0.018 4.018 12 C -0.546 4.546 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.096 4.096 21 C -0.216 4.216 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.226 0.774 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.135 0.865 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.979 -17.653 7.685 23.793 hybrid contribution 0.573 0.310 0.480 0.809 sum -13.406 -17.343 8.165 23.391 Atomic orbital electron populations 1.21784 0.95865 1.01549 1.01914 1.21526 0.95885 0.96801 1.02002 1.21536 0.94512 0.96998 1.02519 1.21767 0.96021 0.96469 1.02528 1.21207 0.81050 0.96453 1.00830 1.44429 1.04520 1.05220 1.84983 1.17635 0.91002 0.85819 0.97100 1.20507 0.98643 0.91401 1.11134 1.20814 0.94058 0.96802 0.97963 1.20043 0.93444 0.96075 0.98776 1.18703 0.94598 0.90268 0.98187 1.21026 1.35937 1.06879 0.90794 0.90912 1.25027 0.95631 0.97402 0.95450 1.69914 1.41993 1.23643 1.18680 0.86800 0.79663 0.79676 0.83330 1.20262 1.21387 1.18932 1.20799 0.99437 0.91374 0.98002 1.20454 0.91856 0.98061 1.11213 0.92718 0.92678 0.92853 0.92033 0.92080 0.91709 0.91631 0.91488 0.91553 0.92846 0.92748 0.77367 0.87245 0.86571 0.95790 0.96226 0.92755 0.86517 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.83 5.21 -26.73 -0.14 -0.97 16 4 C -0.13 -1.03 5.33 -26.73 -0.14 -1.17 16 5 C 0.13 1.37 4.91 -4.04 -0.02 1.35 16 6 N -0.76 -9.65 5.73 -58.63 -0.34 -9.99 16 7 C 0.18 3.03 6.65 -83.79 -0.56 2.48 16 8 C -0.19 -3.40 9.31 -39.38 -0.37 -3.76 16 9 C -0.08 -1.55 9.69 -39.61 -0.38 -1.94 16 10 C -0.08 -1.80 5.07 -104.59 -0.53 -2.33 16 11 C 0.02 0.49 4.17 -29.04 -0.12 0.36 16 12 C -0.51 -14.82 9.65 -34.44 -0.33 -15.15 16 13 H 0.07 2.33 7.98 -52.48 -0.42 1.91 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 16 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 20 C -0.08 -1.54 9.69 -39.61 -0.38 -1.92 16 21 C -0.19 -3.33 9.90 -39.38 -0.39 -3.72 16 22 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.58 7.96 -51.93 -0.41 0.16 16 32 H 0.05 0.61 7.94 -51.93 -0.41 0.20 16 33 H 0.39 4.28 8.49 -40.82 -0.35 3.93 16 34 H 0.11 1.66 6.73 -52.48 -0.35 1.31 16 35 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.02 0.59 7.14 -51.93 -0.37 0.22 16 37 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -31.49 328.33 -9.48 -40.97 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.95 Total: 0.76 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -3.25 Total: -26.43 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.44 Total: -37.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.49 -9.48 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902224980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.080 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds