Wall clock time and date at job start Mon Mar 30 2020 05:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.39668 * 120.00181 * 180.02562 * 6 5 4 8 8 C 1.38907 * 120.07584 * 359.71907 * 7 6 5 9 9 C 1.38108 * 119.92754 * 179.77093 * 8 7 6 10 10 C 1.38283 * 120.07138 * 0.50866 * 9 8 7 11 11 C 1.50700 * 119.92567 * 179.72344 * 10 9 8 12 12 C 1.50699 * 109.47004 * 270.02519 * 11 10 9 13 13 H 1.08005 * 120.00240 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00044 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00216 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99929 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47154 * 90.00290 * 16 14 12 18 18 H 1.48501 * 109.47175 * 210.00420 * 16 14 12 19 19 H 1.48499 * 109.47259 * 329.99815 * 16 14 12 20 20 C 1.38292 * 120.15211 * 359.74911 * 10 9 8 21 21 C 1.38103 * 120.06781 * 359.97438 * 20 10 9 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.09000 * 109.47380 * 59.99240 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46509 * 240.00429 * 2 1 3 26 26 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 28 28 H 1.09004 * 109.47261 * 300.00303 * 3 2 1 29 29 H 1.09001 * 109.46997 * 60.00426 * 4 3 2 30 30 H 1.08996 * 109.47452 * 300.00000 * 4 3 2 31 31 H 1.09001 * 109.47289 * 60.00050 * 5 4 3 32 32 H 1.09004 * 109.47261 * 300.00306 * 5 4 3 33 33 H 0.97001 * 119.99251 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.03686 * 0.02562 * 8 7 6 35 35 H 1.07998 * 119.96672 * 180.25929 * 9 8 7 36 36 H 1.08997 * 109.47151 * 30.02383 * 11 10 9 37 37 H 1.08997 * 109.47346 * 150.02750 * 11 10 9 38 38 H 0.96998 * 119.99949 * 180.02562 * 15 14 12 39 39 H 1.07994 * 119.96476 * 180.02562 * 20 10 9 40 40 H 1.08003 * 120.03201 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 7 5.5451 2.8850 0.0000 7 6 6.2434 4.0945 0.0000 8 6 5.5505 5.2984 -0.0059 9 6 6.2441 6.4927 -0.0011 10 6 7.6269 6.4909 -0.0011 11 6 8.3805 7.7960 -0.0021 12 6 8.6311 8.2301 -1.4233 13 1 8.2803 7.6216 -2.2437 14 6 9.3093 9.4036 -1.6762 15 7 9.5276 9.7828 -2.9165 16 14 9.9168 10.4557 -0.2572 17 1 11.2900 10.0341 0.1191 18 1 9.9325 11.8821 -0.6700 19 1 9.0106 10.2874 0.9071 20 6 8.3200 5.2941 -0.0006 21 6 7.6325 4.0964 0.0004 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.9337 0.9286 -0.8892 30 1 3.9330 0.9288 0.8908 31 1 3.7163 3.3993 0.8895 32 1 3.7170 3.3983 -0.8904 33 1 6.0300 2.0449 0.0000 34 1 4.4705 5.3006 -0.0101 35 1 5.7060 7.4291 -0.0014 36 1 7.7916 8.5559 0.5114 37 1 9.3331 7.6659 0.5114 38 1 10.0051 10.6082 -3.0944 39 1 9.3999 5.2962 -0.0001 40 1 8.1743 3.1621 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902224980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:20 Heat of formation + Delta-G solvation = -24.362938 kcal Electronic energy + Delta-G solvation = -16730.956389 eV Core-core repulsion = 14122.334497 eV Total energy + Delta-G solvation = -2608.621892 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32679 -37.82242 -36.13401 -34.89843 -32.96199 -31.67279 -31.24330 -28.43716 -26.41495 -24.25403 -23.87567 -22.30306 -21.86673 -21.37952 -18.92696 -18.07365 -16.88615 -16.82000 -16.47275 -15.81967 -15.35494 -15.10606 -14.92814 -14.50206 -14.29758 -14.12271 -13.98893 -13.75685 -13.44303 -13.38401 -12.96800 -12.56101 -12.40520 -12.12451 -11.96617 -11.85382 -11.71313 -11.60242 -11.58194 -11.45460 -11.38827 -10.76058 -10.55271 -9.69263 -8.27894 -8.05989 -6.31176 0.66427 0.87131 1.37331 1.39342 1.51954 2.37770 2.59192 3.06915 3.12584 3.85002 4.01661 4.10648 4.17411 4.23289 4.33424 4.41530 4.45472 4.61581 4.70233 4.74689 4.75733 4.85818 4.88714 4.99575 5.05150 5.11991 5.13197 5.16067 5.20616 5.32963 5.35032 5.44537 5.50748 5.52303 5.61525 5.68986 6.05098 6.15703 6.32038 6.57028 6.75529 6.97587 7.32007 8.89692 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.052571 B = 0.003181 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.488893 B = 8799.558559 C = 8946.559864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.120 4.120 5 C 0.125 3.875 6 N -0.747 5.747 7 C 0.195 3.805 8 C -0.199 4.199 9 C -0.089 4.089 10 C -0.124 4.124 11 C 0.027 3.973 12 C -0.516 4.516 13 H 0.025 0.975 14 C 0.003 3.997 15 N -0.952 5.952 16 Si 0.953 3.047 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.247 1.247 20 C -0.089 4.089 21 C -0.194 4.194 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.405 0.595 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.267 0.733 39 H 0.117 0.883 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 -19.410 9.581 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.158 4.158 5 C 0.001 3.999 6 N -0.379 5.379 7 C 0.093 3.907 8 C -0.221 4.221 9 C -0.108 4.108 10 C -0.126 4.126 11 C -0.010 4.010 12 C -0.554 4.554 13 H 0.043 0.957 14 C -0.193 4.193 15 N -0.593 5.593 16 Si 0.776 3.224 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.171 1.171 20 C -0.108 4.108 21 C -0.216 4.216 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.240 0.760 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.803 -19.260 9.479 26.075 hybrid contribution 0.708 0.628 -0.155 0.959 sum -14.095 -18.632 9.324 25.154 Atomic orbital electron populations 1.21793 0.95633 1.01914 1.01890 1.21514 0.96104 0.96268 1.02217 1.21520 0.93852 0.97526 1.02492 1.21689 0.96449 0.94577 1.03054 1.21379 0.79535 0.98361 1.00669 1.44535 1.05547 1.04441 1.83329 1.17762 0.91070 0.86902 0.94979 1.20692 0.99781 0.90901 1.10728 1.20888 0.93548 0.97941 0.98417 1.19931 0.94339 0.95520 1.02770 1.18537 0.95291 0.92056 0.95097 1.21257 1.35612 1.06517 0.92033 0.95702 1.26035 0.95770 0.98948 0.98579 1.70074 1.43291 1.24557 1.21350 0.85614 0.79670 0.77389 0.79730 1.18953 1.20804 1.17054 1.20902 0.99677 0.91838 0.98336 1.20696 0.92410 0.98218 1.10315 0.92642 0.92836 0.92336 0.91968 0.91718 0.91564 0.91905 0.91193 0.90771 0.92601 0.93262 0.75961 0.84996 0.86814 0.95648 0.95670 0.92461 0.86539 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.30 5.93 30.60 0.18 -1.12 16 3 C -0.12 -1.36 5.21 30.59 0.16 -1.20 16 4 C -0.12 -1.55 5.33 30.59 0.16 -1.39 16 5 C 0.12 2.29 4.91 86.38 0.42 2.71 16 6 N -0.75 -16.73 5.73 -339.41 -1.95 -18.68 16 7 C 0.20 6.01 6.65 38.21 0.25 6.26 16 8 C -0.20 -6.67 9.31 22.40 0.21 -6.46 16 9 C -0.09 -3.59 9.69 22.25 0.22 -3.37 16 10 C -0.12 -5.52 5.07 -19.84 -0.10 -5.62 16 11 C 0.03 1.38 4.17 29.10 0.12 1.50 16 12 C -0.52 -31.21 9.65 25.60 0.25 -30.96 16 13 H 0.02 1.68 7.98 -2.91 -0.02 1.66 16 14 C 0.00 0.18 5.47 84.65 0.46 0.64 16 15 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 16 Si 0.95 45.32 27.47 68.60 1.88 47.20 16 17 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 20 C -0.09 -3.52 9.69 22.25 0.22 -3.30 16 21 C -0.19 -6.33 9.90 22.40 0.22 -6.11 16 22 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 23 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.04 7.96 -2.39 -0.02 1.02 16 32 H 0.05 0.99 7.94 -2.38 -0.02 0.97 16 33 H 0.40 7.37 8.49 -92.71 -0.79 6.58 16 34 H 0.13 3.74 6.73 -2.91 -0.02 3.72 16 35 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.03 1.24 7.14 -2.39 -0.02 1.22 16 37 H 0.03 1.21 7.51 -2.39 -0.02 1.19 16 38 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 39 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -69.52 328.33 3.87 -65.65 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.15 Total: 16.07 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 3.49 Total: -49.26 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -1.65 Total: -79.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -69.52 3.87 -65.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902224980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.286 kcal (2) G-P(sol) polarization free energy of solvation -69.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds