Wall clock time and date at job start Mon Mar 30 2020 06:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52992 * 109.47106 * 120.00244 * 2 1 3 5 5 H 1.09002 * 109.47103 * 299.99915 * 4 2 1 6 6 C 1.52997 * 109.47482 * 60.00162 * 4 2 1 7 7 N 1.46497 * 109.47081 * 180.02562 * 4 2 1 8 8 C 1.39674 * 120.00780 * 154.99835 * 7 4 2 9 9 C 1.38915 * 120.06674 * 359.72137 * 8 7 4 10 10 C 1.38110 * 119.92340 * 179.76740 * 9 8 7 11 11 C 1.38286 * 120.06905 * 0.51056 * 10 9 8 12 12 C 1.50708 * 119.92278 * 179.76671 * 11 10 9 13 13 C 1.50708 * 109.46776 * 269.97790 * 12 11 10 14 14 H 1.07994 * 120.00260 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99598 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99995 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46823 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47022 * 119.99797 * 17 15 13 20 20 H 1.48496 * 109.47344 * 240.00285 * 17 15 13 21 21 C 1.38281 * 120.15531 * 359.74488 * 11 10 9 22 22 C 1.38105 * 120.07376 * 359.97438 * 21 11 10 23 23 H 1.09002 * 109.47596 * 299.99825 * 1 2 3 24 24 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 25 25 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47070 * 240.00180 * 2 1 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 29 29 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 6 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 6 4 2 32 32 H 1.09004 * 109.47261 * 179.97438 * 6 4 2 33 33 H 0.97006 * 119.99921 * 334.99446 * 7 4 2 34 34 H 1.07995 * 120.04005 * 0.02562 * 9 8 7 35 35 H 1.07991 * 119.96542 * 180.25178 * 10 9 8 36 36 H 1.08993 * 109.46840 * 29.97402 * 12 11 10 37 37 H 1.08999 * 109.47207 * 149.98022 * 12 11 10 38 38 H 0.96999 * 119.99822 * 180.02562 * 16 15 13 39 39 H 1.08001 * 119.96286 * 179.97438 * 21 11 10 40 40 H 1.07999 * 120.04183 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 7 3.5050 -0.7207 1.2494 8 6 4.2033 -0.8261 2.4545 9 6 3.5101 -0.9256 3.6542 10 6 4.2035 -1.0345 4.8436 11 6 5.5864 -1.0339 4.8419 12 6 6.3398 -1.1476 6.1422 13 6 6.5908 0.2301 6.6994 14 1 6.2403 1.1007 6.1652 15 6 7.2680 0.3787 7.8912 16 7 7.6953 -0.6816 8.5415 17 14 7.5799 2.0863 8.5815 18 1 7.0028 3.1033 7.6660 19 1 6.9416 2.2044 9.9171 20 1 9.0424 2.3086 8.7104 21 6 6.2796 -0.9296 3.6500 22 6 5.5924 -0.8262 2.4565 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.8934 -2.6776 0.3591 31 1 0.4401 -2.1638 1.2492 32 1 1.8938 -2.6778 2.1389 33 1 3.9901 -0.6473 0.4127 34 1 2.4301 -0.9221 3.6565 35 1 3.6653 -1.1160 5.7763 36 1 5.7506 -1.7255 6.8541 37 1 7.2922 -1.6480 5.9677 38 1 8.1714 -0.5769 9.3801 39 1 7.3596 -0.9290 3.6523 40 1 6.1343 -0.7444 1.5259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902226992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:06 Heat of formation + Delta-G solvation = -0.995716 kcal Electronic energy + Delta-G solvation = -17507.947008 eV Core-core repulsion = 14900.338394 eV Total energy + Delta-G solvation = -2607.608614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.21277 -37.46597 -34.19012 -32.70358 -30.68884 -30.04403 -29.27894 -27.20865 -25.94005 -23.60558 -22.58872 -22.01167 -20.10467 -19.71306 -16.86997 -16.20342 -16.13249 -14.85353 -14.67997 -14.33477 -14.12514 -13.68665 -13.64397 -13.04495 -12.72597 -12.62383 -12.48247 -12.35990 -12.22430 -11.91059 -11.60363 -11.26578 -11.20588 -11.07411 -10.93195 -10.62517 -10.59532 -10.46764 -10.02188 -9.71660 -9.36274 -8.94818 -8.34786 -8.16955 -6.68522 -5.94374 -3.98820 2.18741 2.44032 3.33790 3.41169 3.46791 3.68675 4.47265 4.50469 4.68765 4.75686 4.87491 5.23294 5.30600 5.35661 5.38145 5.45045 5.58771 5.61279 5.65816 5.66730 5.72098 5.81824 5.87230 6.04487 6.09075 6.14160 6.20198 6.28954 6.39330 6.54626 6.78157 6.93306 7.36374 7.36831 7.51969 7.66932 7.93212 8.01209 8.03324 8.14517 8.45077 9.07462 9.64548 11.13830 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.004250 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.475419 B = 6586.819396 C = 6834.260567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.146 4.146 4 C 0.157 3.843 5 H 0.076 0.924 6 C -0.171 4.171 7 N -0.751 5.751 8 C 0.185 3.815 9 C -0.196 4.196 10 C -0.081 4.081 11 C -0.086 4.086 12 C 0.053 3.947 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.080 4.080 22 C -0.195 4.195 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.391 0.609 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 -0.209 -17.082 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.203 4.203 4 C 0.051 3.949 5 H 0.094 0.906 6 C -0.229 4.229 7 N -0.383 5.383 8 C 0.086 3.914 9 C -0.219 4.219 10 C -0.100 4.100 11 C -0.088 4.088 12 C 0.016 3.984 13 C -0.545 4.545 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.099 4.099 22 C -0.218 4.218 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.225 0.775 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.572 -0.257 -16.865 21.037 hybrid contribution 0.431 0.959 0.152 1.062 sum -12.141 0.703 -16.714 20.670 Atomic orbital electron populations 1.21865 0.94572 1.02050 1.01967 1.21357 0.96153 0.96646 0.97960 1.21809 1.01570 0.95407 1.01510 1.20808 0.81061 0.95091 0.97978 0.90606 1.22362 1.00688 0.97404 1.02478 1.44482 1.04100 1.84033 1.05682 1.17594 0.90884 0.97073 0.85880 1.20539 0.98531 1.11162 0.91624 1.20845 0.94218 0.98285 0.96613 1.20440 0.93540 0.97985 0.96788 1.18248 0.94673 0.97302 0.88186 1.21186 1.35428 0.92218 1.05663 0.92517 1.25023 0.95827 0.96712 0.96936 1.69974 1.38859 1.28503 1.16253 0.86523 0.77863 0.84697 0.78895 1.19718 1.21031 1.21023 1.20817 0.99381 0.98196 0.91462 1.20452 0.91896 1.11330 0.98091 0.92426 0.92599 0.92178 0.91154 0.92258 0.93012 0.92581 0.92777 0.92064 0.92040 0.77534 0.87333 0.86757 0.95730 0.95737 0.93048 0.86698 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.10 -0.87 2.55 -90.62 -0.23 -1.11 16 3 C -0.15 -1.32 9.03 37.16 0.34 -0.99 16 4 C 0.16 1.67 1.85 -67.94 -0.13 1.54 16 5 H 0.08 0.90 6.47 -51.93 -0.34 0.57 16 6 C -0.17 -1.71 9.09 37.16 0.34 -1.38 16 7 N -0.75 -9.39 4.56 -52.17 -0.24 -9.63 16 8 C 0.19 3.02 6.64 -83.79 -0.56 2.46 16 9 C -0.20 -3.43 8.86 -39.38 -0.35 -3.78 16 10 C -0.08 -1.65 9.69 -39.61 -0.38 -2.03 16 11 C -0.09 -1.94 5.07 -104.58 -0.53 -2.47 16 12 C 0.05 1.40 5.10 -29.03 -0.15 1.26 16 13 C -0.51 -14.59 9.09 -34.44 -0.31 -14.90 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.08 -1.62 9.69 -39.61 -0.38 -2.01 16 22 C -0.20 -3.39 9.90 -39.38 -0.39 -3.78 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.59 7.44 -51.93 -0.39 0.20 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 32 H 0.06 0.73 7.75 -51.93 -0.40 0.32 16 33 H 0.39 4.31 8.40 -40.82 -0.34 3.96 16 34 H 0.11 1.67 6.14 -52.49 -0.32 1.34 16 35 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.11 2.28 8.06 -52.49 -0.42 1.85 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -30.34 323.88 -8.79 -39.13 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.64 Total: 1.39 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -2.51 Total: -26.41 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.50 Total: -35.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.34 -8.79 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.135 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds