Wall clock time and date at job start Mon Mar 30 2020 06:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52992 * 109.47106 * 120.00244 * 2 1 3 5 5 H 1.09002 * 109.47103 * 299.99915 * 4 2 1 6 6 C 1.52997 * 109.47482 * 60.00162 * 4 2 1 7 7 N 1.46497 * 109.47081 * 180.02562 * 4 2 1 8 8 C 1.39674 * 120.00780 * 154.99835 * 7 4 2 9 9 C 1.38915 * 120.06674 * 359.72137 * 8 7 4 10 10 C 1.38110 * 119.92340 * 179.76740 * 9 8 7 11 11 C 1.38286 * 120.06905 * 0.51056 * 10 9 8 12 12 C 1.50708 * 119.92278 * 179.76671 * 11 10 9 13 13 C 1.50708 * 109.46776 * 269.97790 * 12 11 10 14 14 H 1.07994 * 120.00260 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99598 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99995 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46823 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47022 * 119.99797 * 17 15 13 20 20 H 1.48496 * 109.47344 * 240.00285 * 17 15 13 21 21 C 1.38281 * 120.15531 * 359.74488 * 11 10 9 22 22 C 1.38105 * 120.07376 * 359.97438 * 21 11 10 23 23 H 1.09002 * 109.47596 * 299.99825 * 1 2 3 24 24 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 25 25 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47070 * 240.00180 * 2 1 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 29 29 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 6 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 6 4 2 32 32 H 1.09004 * 109.47261 * 179.97438 * 6 4 2 33 33 H 0.97006 * 119.99921 * 334.99446 * 7 4 2 34 34 H 1.07995 * 120.04005 * 0.02562 * 9 8 7 35 35 H 1.07991 * 119.96542 * 180.25178 * 10 9 8 36 36 H 1.08993 * 109.46840 * 29.97402 * 12 11 10 37 37 H 1.08999 * 109.47207 * 149.98022 * 12 11 10 38 38 H 0.96999 * 119.99822 * 180.02562 * 16 15 13 39 39 H 1.08001 * 119.96286 * 179.97438 * 21 11 10 40 40 H 1.07999 * 120.04183 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 7 3.5050 -0.7207 1.2494 8 6 4.2033 -0.8261 2.4545 9 6 3.5101 -0.9256 3.6542 10 6 4.2035 -1.0345 4.8436 11 6 5.5864 -1.0339 4.8419 12 6 6.3398 -1.1476 6.1422 13 6 6.5908 0.2301 6.6994 14 1 6.2403 1.1007 6.1652 15 6 7.2680 0.3787 7.8912 16 7 7.6953 -0.6816 8.5415 17 14 7.5799 2.0863 8.5815 18 1 7.0028 3.1033 7.6660 19 1 6.9416 2.2044 9.9171 20 1 9.0424 2.3086 8.7104 21 6 6.2796 -0.9296 3.6500 22 6 5.5924 -0.8262 2.4565 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.8934 -2.6776 0.3591 31 1 0.4401 -2.1638 1.2492 32 1 1.8938 -2.6778 2.1389 33 1 3.9901 -0.6473 0.4127 34 1 2.4301 -0.9221 3.6565 35 1 3.6653 -1.1160 5.7763 36 1 5.7506 -1.7255 6.8541 37 1 7.2922 -1.6480 5.9677 38 1 8.1714 -0.5769 9.3801 39 1 7.3596 -0.9290 3.6523 40 1 6.1343 -0.7444 1.5259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902226992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:05 Heat of formation + Delta-G solvation = -17.037240 kcal Electronic energy + Delta-G solvation = -17508.642620 eV Core-core repulsion = 14900.338394 eV Total energy + Delta-G solvation = -2608.304226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49968 -38.57343 -35.70822 -34.47398 -32.03437 -31.60584 -30.45424 -28.28687 -27.33681 -25.03957 -24.07981 -23.31885 -21.54174 -20.70544 -18.48734 -18.09586 -17.15913 -16.70136 -15.84291 -15.54525 -15.32673 -14.84042 -14.71733 -14.44702 -14.33042 -13.98114 -13.81675 -13.34318 -13.19279 -13.14903 -13.02106 -12.81176 -12.56233 -12.39609 -12.36761 -11.87007 -11.79380 -11.57674 -11.50520 -11.34962 -11.31611 -10.58539 -10.52210 -9.66929 -8.28991 -7.92332 -6.30122 0.68527 0.91229 1.39660 1.39792 1.53928 2.41671 2.61579 3.12673 3.17444 3.75423 4.01853 4.09043 4.20984 4.24258 4.46829 4.53303 4.57098 4.64628 4.73296 4.79403 4.83563 4.89789 4.98464 5.02392 5.06994 5.13275 5.20181 5.21244 5.35544 5.38267 5.42037 5.48119 5.52199 5.57627 5.71481 5.82495 6.07282 6.24589 6.26183 6.63398 6.83465 7.02353 7.38259 8.92351 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.004250 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.475419 B = 6586.819396 C = 6834.260567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.152 3.848 5 H 0.065 0.935 6 C -0.167 4.167 7 N -0.737 5.737 8 C 0.203 3.797 9 C -0.195 4.195 10 C -0.090 4.090 11 C -0.125 4.125 12 C 0.063 3.937 13 C -0.525 4.525 14 H 0.052 0.948 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.089 4.089 22 C -0.193 4.193 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.403 0.597 34 H 0.132 0.868 35 H 0.107 0.893 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.110 0.890 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 0.985 -19.467 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.203 4.203 4 C 0.046 3.954 5 H 0.084 0.916 6 C -0.225 4.225 7 N -0.368 5.368 8 C 0.101 3.899 9 C -0.218 4.218 10 C -0.109 4.109 11 C -0.127 4.127 12 C 0.026 3.974 13 C -0.563 4.563 14 H 0.070 0.930 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.108 4.108 22 C -0.215 4.215 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.238 0.762 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.089 0.935 -19.297 23.911 hybrid contribution 0.803 0.549 0.761 1.235 sum -13.286 1.484 -18.535 22.853 Atomic orbital electron populations 1.21865 0.93400 1.02703 1.02376 1.21308 0.97016 0.95969 0.97026 1.21814 1.00953 0.95859 1.01712 1.21002 0.79589 0.95887 0.98879 0.91647 1.22318 1.01959 0.96418 1.01829 1.44575 1.05115 1.82289 1.04785 1.17662 0.90794 0.94563 0.86912 1.20677 0.99612 1.10526 0.90937 1.20827 0.93427 0.98910 0.97750 1.20125 0.94440 1.02504 0.95650 1.17981 0.93450 0.95855 0.90070 1.21484 1.35694 0.92937 1.06197 0.92988 1.25960 0.95332 1.01158 0.97179 1.70099 1.39456 1.30966 1.16774 0.85387 0.78073 0.79302 0.78228 1.19034 1.20093 1.20065 1.20825 0.99345 0.98711 0.91922 1.20659 0.92498 1.10338 0.98029 0.92789 0.91512 0.91415 0.90005 0.93168 0.91627 0.93651 0.92075 0.90151 0.93994 0.76157 0.85043 0.87449 0.98510 0.98449 0.92654 0.87220 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.84 71.98 0.64 -1.00 16 2 C -0.09 -1.29 2.55 -10.80 -0.03 -1.31 16 3 C -0.15 -2.23 9.03 71.98 0.65 -1.58 16 4 C 0.15 2.77 1.85 44.99 0.08 2.85 16 5 H 0.07 1.38 6.47 -2.39 -0.02 1.37 16 6 C -0.17 -2.85 9.09 71.98 0.65 -2.19 16 7 N -0.74 -16.18 4.56 -318.98 -1.45 -17.63 16 8 C 0.20 6.22 6.64 38.21 0.25 6.47 16 9 C -0.20 -6.63 8.86 22.40 0.20 -6.43 16 10 C -0.09 -3.78 9.69 22.25 0.22 -3.57 16 11 C -0.13 -5.92 5.07 -19.84 -0.10 -6.02 16 12 C 0.06 3.60 5.10 29.11 0.15 3.75 16 13 C -0.53 -31.43 9.09 25.60 0.23 -31.20 16 14 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 17 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.09 -3.69 9.69 22.25 0.22 -3.48 16 22 C -0.19 -6.39 9.90 22.40 0.22 -6.17 16 23 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.67 6.43 -2.39 -0.02 0.65 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.85 7.44 -2.39 -0.02 0.83 16 28 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.08 6.43 -2.39 -0.02 1.06 16 32 H 0.04 0.89 7.75 -2.38 -0.02 0.87 16 33 H 0.40 7.36 8.40 -92.70 -0.78 6.58 16 34 H 0.13 3.81 6.14 -2.91 -0.02 3.79 16 35 H 0.11 4.49 8.06 -2.92 -0.02 4.47 16 36 H 0.00 -0.21 8.08 -2.39 -0.02 -0.23 16 37 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -67.43 323.88 4.93 -62.50 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.22 Total: 14.47 kcal Atomic # 6 Polarization: -53.17 SS G_CDS: 3.84 Total: -49.33 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.17 Total: -75.37 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.43 4.93 -62.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.463 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds