Wall clock time and date at job start Mon Mar 30 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47471 * 2 1 4 4 C 1.52997 * 109.47201 * 120.00110 * 2 1 3 5 5 H 1.09005 * 109.47456 * 59.99169 * 4 2 1 6 6 C 1.53004 * 109.47013 * 300.00005 * 4 2 1 7 7 N 1.46500 * 109.47419 * 179.97438 * 4 2 1 8 8 C 1.39676 * 120.00062 * 204.99556 * 7 4 2 9 9 C 1.38906 * 120.07171 * 179.97438 * 8 7 4 10 10 C 1.38111 * 119.92343 * 179.97438 * 9 8 7 11 11 C 1.38288 * 120.07382 * 0.28047 * 10 9 8 12 12 C 1.50698 * 119.92407 * 179.69843 * 11 10 9 13 13 C 1.50695 * 109.47077 * 90.00107 * 12 11 10 14 14 H 1.08001 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00403 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00253 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47224 * 59.99893 * 17 15 13 19 19 H 1.48504 * 109.47005 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47172 * 299.99711 * 17 15 13 21 21 C 1.38286 * 120.14755 * 359.44532 * 11 10 9 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 11 10 23 23 H 1.08999 * 109.47071 * 300.00209 * 1 2 3 24 24 H 1.08997 * 109.46948 * 59.99843 * 1 2 3 25 25 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47071 * 239.99791 * 2 1 3 27 27 H 1.08999 * 109.47144 * 59.99836 * 3 2 1 28 28 H 1.08995 * 109.46888 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46791 * 299.99702 * 3 2 1 30 30 H 1.09003 * 109.46942 * 299.99436 * 6 4 2 31 31 H 1.08995 * 109.47203 * 59.99647 * 6 4 2 32 32 H 1.08997 * 109.47101 * 179.97438 * 6 4 2 33 33 H 0.96994 * 119.99675 * 24.99984 * 7 4 2 34 34 H 1.07999 * 120.03932 * 0.02562 * 9 8 7 35 35 H 1.08002 * 119.96028 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46776 * 210.00059 * 12 11 10 37 37 H 1.09003 * 109.47041 * 330.00009 * 12 11 10 38 38 H 0.96990 * 120.00273 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.96005 * 180.25011 * 21 11 10 40 40 H 1.07998 * 120.03717 * 179.70130 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 3.5050 -0.7218 1.2489 8 6 4.2031 -1.7128 1.9428 9 6 5.5922 -1.7151 1.9431 10 6 6.2794 -2.6961 2.6307 11 6 5.5862 -3.6787 3.3135 12 6 6.3395 -4.7515 4.0570 13 6 6.5920 -4.2990 5.4721 14 1 6.2417 -3.3316 5.8003 15 6 7.2694 -5.1205 6.3481 16 7 7.6947 -6.2992 5.9488 17 14 7.5818 -4.5599 8.1023 18 1 6.2847 -4.3056 8.7792 19 1 8.3231 -5.6175 8.8353 20 1 8.3855 -3.3113 8.0873 21 6 4.2034 -3.6761 3.3199 22 6 3.5099 -2.6980 2.6344 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4423 -0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.8934 1.0277 2.4985 31 1 0.4401 0.0001 2.4984 32 1 1.8930 -0.5141 3.3884 33 1 3.9901 -0.0340 0.7669 34 1 6.1342 -0.9501 1.4070 35 1 7.3594 -2.6987 2.6310 36 1 5.7497 -5.6681 4.0684 37 1 7.2914 -4.9380 3.5598 38 1 8.1715 -6.8770 6.5648 39 1 3.6650 -4.4427 3.8575 40 1 2.4299 -2.6993 2.6359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902226993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:08 Heat of formation + Delta-G solvation = 1.663459 kcal Electronic energy + Delta-G solvation = -17494.452389 eV Core-core repulsion = 14886.959086 eV Total energy + Delta-G solvation = -2607.493303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.26671 -37.59260 -34.21575 -32.68498 -30.51288 -30.01349 -28.93606 -27.46379 -26.10777 -24.09552 -22.64275 -21.96169 -20.04544 -19.10856 -17.04817 -16.20930 -15.96521 -15.39017 -14.76660 -14.24018 -14.01284 -13.84434 -13.39181 -13.28402 -12.79473 -12.69319 -12.47558 -12.34762 -12.12152 -11.87196 -11.54384 -11.31228 -11.22506 -11.10460 -10.80670 -10.64668 -10.57598 -10.49508 -10.01781 -9.71335 -9.36667 -8.96573 -8.33804 -8.16873 -6.68771 -5.93856 -3.98477 2.18792 2.43972 3.36888 3.40510 3.44230 3.69420 4.47264 4.54640 4.63241 4.75036 4.80913 5.20911 5.25840 5.36160 5.38386 5.40215 5.54018 5.59220 5.63261 5.66778 5.71788 5.80315 5.89140 5.97140 6.01455 6.13298 6.22119 6.34812 6.39494 6.54628 6.78292 6.93507 7.36498 7.36938 7.52046 7.66914 7.93530 8.01471 8.03499 8.14579 8.45355 9.07249 9.64721 11.14327 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041762 B = 0.004062 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.311255 B = 6890.743749 C = 7034.431545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.149 4.149 4 C 0.157 3.843 5 H 0.075 0.925 6 C -0.173 4.173 7 N -0.753 5.753 8 C 0.184 3.816 9 C -0.196 4.196 10 C -0.080 4.080 11 C -0.086 4.086 12 C 0.054 3.946 13 C -0.508 4.508 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.081 4.081 22 C -0.196 4.196 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.391 0.609 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 12.990 -11.705 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.207 4.207 4 C 0.051 3.949 5 H 0.093 0.907 6 C -0.231 4.231 7 N -0.386 5.386 8 C 0.085 3.915 9 C -0.218 4.218 10 C -0.098 4.098 11 C -0.088 4.088 12 C 0.017 3.983 13 C -0.547 4.547 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.099 4.099 22 C -0.219 4.219 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.597 12.780 -11.612 21.374 hybrid contribution 0.428 0.553 0.886 1.129 sum -12.170 13.332 -10.726 20.998 Atomic orbital electron populations 1.21865 0.94558 1.02044 1.02008 1.21352 0.96176 0.96563 0.98131 1.21891 1.00904 0.95955 1.01917 1.20761 0.81058 0.99252 0.93820 0.90676 1.22406 1.00634 1.01212 0.98891 1.44577 1.04153 1.31269 1.58562 1.17612 0.90917 0.89462 0.93544 1.20454 0.91897 1.02398 1.07047 1.20821 0.99385 0.93700 0.95928 1.20445 0.93541 0.98060 0.96717 1.18234 0.94663 0.91496 0.93938 1.21109 1.35623 1.02569 0.95356 0.92631 1.25020 0.95819 0.94955 0.98659 1.69951 1.38753 1.09214 1.35696 0.86632 0.78373 0.78233 0.84635 1.20245 1.21316 1.20240 1.20848 0.94219 0.97515 0.97349 1.20543 0.98545 0.98036 1.04745 0.92087 0.92599 0.92471 0.90853 0.92094 0.92760 0.92758 0.92369 0.92120 0.92061 0.77417 0.87567 0.86684 0.95735 0.95737 0.92927 0.86739 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.84 37.16 0.33 -0.73 16 2 C -0.10 -0.87 2.91 -90.62 -0.26 -1.14 16 3 C -0.15 -1.15 8.67 37.16 0.32 -0.83 16 4 C 0.16 1.68 2.10 -67.93 -0.14 1.54 16 5 H 0.08 0.88 6.49 -51.93 -0.34 0.54 16 6 C -0.17 -1.81 8.72 37.16 0.32 -1.48 16 7 N -0.75 -9.58 5.17 -52.17 -0.27 -9.85 16 8 C 0.18 3.04 6.64 -83.79 -0.56 2.48 16 9 C -0.20 -3.42 9.90 -39.38 -0.39 -3.81 16 10 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 11 C -0.09 -1.95 5.07 -104.59 -0.53 -2.48 16 12 C 0.05 1.43 5.10 -29.04 -0.15 1.28 16 13 C -0.51 -14.66 9.09 -34.44 -0.31 -14.97 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 C -0.08 -1.65 9.69 -39.61 -0.38 -2.03 16 22 C -0.20 -3.45 8.85 -39.38 -0.35 -3.80 16 23 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 28 H 0.05 0.42 6.51 -51.93 -0.34 0.09 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.06 0.77 7.70 -51.93 -0.40 0.37 16 33 H 0.39 4.40 6.88 -40.82 -0.28 4.12 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 36 H 0.02 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.11 1.67 6.11 -52.49 -0.32 1.35 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -30.40 318.40 -8.69 -39.09 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.35 Total: 1.76 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -2.58 Total: -26.44 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.47 Total: -36.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.40 -8.69 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.758 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds