Wall clock time and date at job start Mon Mar 30 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47471 * 2 1 4 4 C 1.52997 * 109.47201 * 120.00110 * 2 1 3 5 5 H 1.09005 * 109.47456 * 59.99169 * 4 2 1 6 6 C 1.53004 * 109.47013 * 300.00005 * 4 2 1 7 7 N 1.46500 * 109.47419 * 179.97438 * 4 2 1 8 8 C 1.39676 * 120.00062 * 204.99556 * 7 4 2 9 9 C 1.38906 * 120.07171 * 179.97438 * 8 7 4 10 10 C 1.38111 * 119.92343 * 179.97438 * 9 8 7 11 11 C 1.38288 * 120.07382 * 0.28047 * 10 9 8 12 12 C 1.50698 * 119.92407 * 179.69843 * 11 10 9 13 13 C 1.50695 * 109.47077 * 90.00107 * 12 11 10 14 14 H 1.08001 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00403 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00253 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47224 * 59.99893 * 17 15 13 19 19 H 1.48504 * 109.47005 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47172 * 299.99711 * 17 15 13 21 21 C 1.38286 * 120.14755 * 359.44532 * 11 10 9 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 11 10 23 23 H 1.08999 * 109.47071 * 300.00209 * 1 2 3 24 24 H 1.08997 * 109.46948 * 59.99843 * 1 2 3 25 25 H 1.08999 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47071 * 239.99791 * 2 1 3 27 27 H 1.08999 * 109.47144 * 59.99836 * 3 2 1 28 28 H 1.08995 * 109.46888 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46791 * 299.99702 * 3 2 1 30 30 H 1.09003 * 109.46942 * 299.99436 * 6 4 2 31 31 H 1.08995 * 109.47203 * 59.99647 * 6 4 2 32 32 H 1.08997 * 109.47101 * 179.97438 * 6 4 2 33 33 H 0.96994 * 119.99675 * 24.99984 * 7 4 2 34 34 H 1.07999 * 120.03932 * 0.02562 * 9 8 7 35 35 H 1.08002 * 119.96028 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46776 * 210.00059 * 12 11 10 37 37 H 1.09003 * 109.47041 * 330.00009 * 12 11 10 38 38 H 0.96990 * 120.00273 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.96005 * 180.25011 * 21 11 10 40 40 H 1.07998 * 120.03717 * 179.70130 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 3.5050 -0.7218 1.2489 8 6 4.2031 -1.7128 1.9428 9 6 5.5922 -1.7151 1.9431 10 6 6.2794 -2.6961 2.6307 11 6 5.5862 -3.6787 3.3135 12 6 6.3395 -4.7515 4.0570 13 6 6.5920 -4.2990 5.4721 14 1 6.2417 -3.3316 5.8003 15 6 7.2694 -5.1205 6.3481 16 7 7.6947 -6.2992 5.9488 17 14 7.5818 -4.5599 8.1023 18 1 6.2847 -4.3056 8.7792 19 1 8.3231 -5.6175 8.8353 20 1 8.3855 -3.3113 8.0873 21 6 4.2034 -3.6761 3.3199 22 6 3.5099 -2.6980 2.6344 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4423 -0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.8934 1.0277 2.4985 31 1 0.4401 0.0001 2.4984 32 1 1.8930 -0.5141 3.3884 33 1 3.9901 -0.0340 0.7669 34 1 6.1342 -0.9501 1.4070 35 1 7.3594 -2.6987 2.6310 36 1 5.7497 -5.6681 4.0684 37 1 7.2914 -4.9380 3.5598 38 1 8.1715 -6.8770 6.5648 39 1 3.6650 -4.4427 3.8575 40 1 2.4299 -2.6993 2.6359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902226993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:08 Heat of formation + Delta-G solvation = -14.603043 kcal Electronic energy + Delta-G solvation = -17495.157757 eV Core-core repulsion = 14886.959086 eV Total energy + Delta-G solvation = -2608.198672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53267 -38.70485 -35.74079 -34.47748 -31.93031 -31.60358 -30.03996 -28.28875 -27.62245 -25.32427 -24.31919 -23.34933 -21.57728 -19.98900 -18.49009 -18.23913 -17.03305 -16.68210 -16.25164 -15.65220 -15.34612 -14.94352 -14.61346 -14.43741 -14.13243 -14.03168 -13.77801 -13.61596 -13.20185 -13.03759 -12.94544 -12.88205 -12.53712 -12.41291 -12.21142 -11.92726 -11.73595 -11.59257 -11.43613 -11.37613 -11.30820 -10.57535 -10.53172 -9.67418 -8.29146 -7.93192 -6.29979 0.67997 0.90472 1.39622 1.42909 1.51215 2.41826 2.61195 3.12870 3.16771 3.81306 3.96332 4.06641 4.22039 4.24910 4.48292 4.51436 4.52377 4.61768 4.71798 4.78747 4.85354 4.88307 5.00970 5.04811 5.06940 5.12337 5.19393 5.21727 5.30144 5.38019 5.41765 5.46570 5.56962 5.60356 5.71070 5.82237 6.06875 6.24195 6.26092 6.62856 6.83180 7.00987 7.38250 8.92343 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.041762 B = 0.004062 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.311255 B = 6890.743749 C = 7034.431545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.151 3.849 5 H 0.068 0.932 6 C -0.169 4.169 7 N -0.739 5.739 8 C 0.201 3.799 9 C -0.193 4.193 10 C -0.089 4.089 11 C -0.125 4.125 12 C 0.064 3.936 13 C -0.527 4.527 14 H 0.052 0.948 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.268 1.268 21 C -0.090 4.090 22 C -0.195 4.195 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.402 0.598 34 H 0.137 0.863 35 H 0.110 0.890 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.108 0.892 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 15.605 -12.209 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.206 4.206 4 C 0.046 3.954 5 H 0.087 0.913 6 C -0.228 4.228 7 N -0.371 5.371 8 C 0.099 3.901 9 C -0.216 4.216 10 C -0.108 4.108 11 C -0.127 4.127 12 C 0.027 3.973 13 C -0.565 4.565 14 H 0.070 0.930 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.193 1.193 21 C -0.109 4.109 22 C -0.217 4.217 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.239 0.761 34 H 0.155 0.845 35 H 0.128 0.872 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.105 15.433 -12.147 24.179 hybrid contribution 0.794 -0.189 0.920 1.230 sum -13.310 15.244 -11.227 23.143 Atomic orbital electron populations 1.21865 0.93414 1.02287 1.02802 1.21296 0.97044 0.96708 0.96505 1.21897 1.00789 0.95365 1.02590 1.20966 0.79544 0.99461 0.95392 0.91349 1.22367 1.01916 1.01054 0.97424 1.44686 1.05211 1.30111 1.57098 1.17693 0.90845 0.89364 0.92242 1.20661 0.92499 1.02043 1.06371 1.20827 0.99353 0.94165 0.96428 1.20131 0.94444 0.98701 0.99400 1.17970 0.93445 0.92012 0.93872 1.21430 1.35869 1.02549 0.96680 0.92965 1.25963 0.95323 0.94908 1.03418 1.70083 1.39360 1.10410 1.37434 0.85497 0.78623 0.78099 0.78818 1.19302 1.20461 1.19267 1.20833 0.93426 0.98472 0.98143 1.20684 0.99654 0.97315 1.04050 0.91639 0.91510 0.92548 0.91103 0.91971 0.92939 0.91614 0.91799 0.90200 0.94303 0.76123 0.84480 0.87192 0.98503 0.98445 0.92636 0.87402 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.84 71.98 0.64 -0.99 16 2 C -0.10 -1.32 2.91 -10.79 -0.03 -1.35 16 3 C -0.15 -1.77 8.67 71.98 0.62 -1.15 16 4 C 0.15 2.81 2.10 44.99 0.09 2.90 16 5 H 0.07 1.40 6.49 -2.38 -0.02 1.39 16 6 C -0.17 -3.06 8.72 71.98 0.63 -2.43 16 7 N -0.74 -16.58 5.17 -318.95 -1.65 -18.23 16 8 C 0.20 6.21 6.64 38.21 0.25 6.47 16 9 C -0.19 -6.45 9.90 22.40 0.22 -6.23 16 10 C -0.09 -3.69 9.69 22.25 0.22 -3.48 16 11 C -0.12 -5.90 5.07 -19.84 -0.10 -6.00 16 12 C 0.06 3.63 5.10 29.10 0.15 3.78 16 13 C -0.53 -31.56 9.09 25.60 0.23 -31.33 16 14 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 15 C 0.00 0.09 5.46 84.65 0.46 0.55 16 16 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 17 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.09 -3.77 9.69 22.25 0.22 -3.55 16 22 C -0.19 -6.63 8.85 22.40 0.20 -6.43 16 23 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 0.74 6.43 -2.39 -0.02 0.72 16 28 H 0.05 0.64 6.51 -2.39 -0.02 0.63 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 1.09 6.43 -2.39 -0.02 1.07 16 31 H 0.08 1.14 6.43 -2.39 -0.02 1.13 16 32 H 0.04 0.88 7.70 -2.39 -0.02 0.87 16 33 H 0.40 7.61 6.88 -92.71 -0.64 6.97 16 34 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.00 -0.20 8.09 -2.39 -0.02 -0.22 16 37 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 38 H 0.26 15.44 8.31 -92.72 -0.77 14.67 16 39 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.13 3.83 6.11 -2.91 -0.02 3.81 16 Total: -1.00 -67.38 318.40 4.84 -62.55 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.37 Total: 15.05 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 3.80 Total: -49.23 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -1.36 Total: -76.06 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -67.38 4.84 -62.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.947 kcal (2) G-P(sol) polarization free energy of solvation -67.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds