Wall clock time and date at job start Mon Mar 30 2020 05:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 C 1.52996 * 109.46806 * 120.00021 * 2 1 3 5 5 C 1.53002 * 109.46969 * 174.99874 * 4 2 1 6 6 N 1.46506 * 109.47035 * 179.97438 * 5 4 2 7 7 C 1.39673 * 119.99605 * 180.02562 * 6 5 4 8 8 C 1.38914 * 120.07707 * 359.72057 * 7 6 5 9 9 C 1.38106 * 119.92380 * 179.76726 * 8 7 6 10 10 C 1.38287 * 120.07267 * 0.51577 * 9 8 7 11 11 C 1.50701 * 119.92365 * 179.72214 * 10 9 8 12 12 C 1.50700 * 109.47054 * 270.02104 * 11 10 9 13 13 H 1.08007 * 120.00062 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00347 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99604 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00234 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46762 * 89.99753 * 16 14 12 18 18 H 1.48501 * 109.46735 * 209.99882 * 16 14 12 19 19 H 1.48500 * 109.46894 * 329.99867 * 16 14 12 20 20 C 1.38283 * 120.15072 * 359.74237 * 10 9 8 21 21 C 1.38101 * 120.07597 * 359.97438 * 20 10 9 22 22 H 1.08998 * 109.47609 * 300.00075 * 1 2 3 23 23 H 1.09002 * 109.47435 * 60.00013 * 1 2 3 24 24 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47001 * 239.99492 * 2 1 3 26 26 H 1.08992 * 109.47259 * 299.99722 * 3 2 1 27 27 H 1.09001 * 109.46772 * 60.00021 * 3 2 1 28 28 H 1.08998 * 109.46500 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47298 * 55.00094 * 4 2 1 30 30 H 1.09004 * 109.47552 * 294.99966 * 4 2 1 31 31 H 1.09004 * 109.46930 * 59.99996 * 5 4 2 32 32 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 33 33 H 0.96999 * 120.00080 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.03713 * 0.02562 * 8 7 6 35 35 H 1.07994 * 119.96460 * 180.25714 * 9 8 7 36 36 H 1.08994 * 109.47299 * 30.02087 * 11 10 9 37 37 H 1.09002 * 109.47442 * 150.02258 * 11 10 9 38 38 H 0.97006 * 119.99840 * 180.02562 * 15 14 12 39 39 H 1.08009 * 119.96048 * 180.02562 * 20 10 9 40 40 H 1.08005 * 120.03673 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1880 6 7 4.0531 -1.5212 2.3845 7 6 5.4220 -1.7403 2.5544 8 6 6.3213 -1.3097 1.5872 9 6 7.6746 -1.5238 1.7607 10 6 8.1339 -2.1754 2.8906 11 6 9.6108 -2.4127 3.0736 12 6 9.9860 -3.7383 2.4628 13 1 9.2304 -4.3482 1.9898 14 6 11.2936 -4.1731 2.5086 15 7 12.2135 -3.4308 3.0849 16 14 11.7585 -5.8166 1.7521 17 1 12.1354 -5.6178 0.3295 18 1 12.9084 -6.3948 2.4928 19 1 10.6012 -6.7437 1.8326 20 6 7.2409 -2.6101 3.8529 21 6 5.8868 -2.3941 3.6885 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4424 0.0005 29 1 1.6053 -1.7198 1.2951 30 1 1.7515 -0.1583 2.1370 31 1 3.9994 0.1675 1.1421 32 1 3.8531 -1.3940 0.3003 33 1 3.4258 -1.8259 3.0586 34 1 5.9629 -0.8045 0.7025 35 1 8.3747 -1.1856 1.0111 36 1 10.1702 -1.6157 2.5839 37 1 9.8482 -2.4227 4.1374 38 1 13.1336 -3.7365 3.1169 39 1 7.6030 -3.1183 4.7345 40 1 5.1899 -2.7343 4.4403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902227676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:23 Heat of formation + Delta-G solvation = -7.494835 kcal Electronic energy + Delta-G solvation = -16979.951939 eV Core-core repulsion = 14372.061503 eV Total energy + Delta-G solvation = -2607.890436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.93287 -37.35085 -35.00676 -32.93362 -30.80173 -30.12150 -28.60758 -27.47113 -25.89342 -23.64421 -22.71946 -21.43585 -20.25507 -19.89418 -16.81738 -16.20211 -15.77496 -15.63672 -14.80568 -14.43606 -14.21134 -14.08570 -13.64270 -13.06078 -12.90643 -12.66554 -12.60693 -12.45679 -12.13825 -11.92025 -11.63646 -11.22513 -11.17237 -11.02646 -10.93006 -10.83717 -10.61106 -10.48516 -10.04668 -9.70359 -9.37181 -8.95440 -8.34463 -8.17854 -6.70536 -5.94369 -3.98821 2.18011 2.42825 3.35062 3.40931 3.45728 3.67733 4.47210 4.54200 4.56941 4.67104 4.72912 5.05462 5.18061 5.32884 5.37498 5.38051 5.40242 5.53695 5.59844 5.62147 5.63105 5.75973 5.81239 5.85947 6.05388 6.09705 6.11633 6.20314 6.38294 6.51394 6.77264 6.92000 7.35688 7.35855 7.49846 7.66045 7.91460 8.01122 8.02824 8.12289 8.44933 9.07130 9.64467 11.13901 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042100 B = 0.003480 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.916526 B = 8043.317877 C = 8150.520095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.125 4.125 5 C 0.129 3.871 6 N -0.759 5.759 7 C 0.181 3.819 8 C -0.195 4.195 9 C -0.081 4.081 10 C -0.085 4.085 11 C 0.053 3.947 12 C -0.507 4.507 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.080 4.080 21 C -0.194 4.194 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.392 0.608 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.116 0.884 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.106 7.213 -4.006 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.163 4.163 5 C 0.004 3.996 6 N -0.392 5.392 7 C 0.081 3.919 8 C -0.217 4.217 9 C -0.100 4.100 10 C -0.087 4.087 11 C 0.016 3.984 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.099 4.099 21 C -0.217 4.217 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.225 0.775 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.930 7.316 -4.144 22.556 hybrid contribution 0.097 -1.075 -0.185 1.095 sum -20.833 6.241 -4.328 22.175 Atomic orbital electron populations 1.21836 0.95115 1.01711 1.01760 1.21042 0.95731 0.96490 0.98048 1.21922 1.01545 0.95728 1.01692 1.21822 0.94997 1.00983 0.98518 1.21260 0.93268 0.96615 0.88449 1.44420 1.03986 1.66835 1.24003 1.17619 0.83296 0.96415 0.94539 1.20509 0.93295 1.08283 0.99656 1.20846 0.93992 0.97844 0.97275 1.20451 0.98621 0.96208 0.93384 1.18243 0.85477 0.96996 0.97663 1.21146 0.93490 1.03455 1.36491 0.92571 1.25022 0.96574 0.97336 0.95555 1.69964 1.01772 1.37643 1.44221 0.86571 0.78042 0.84084 0.79211 1.20670 1.21247 1.19856 1.20826 0.91777 0.98197 0.99066 1.20463 0.96032 1.07018 0.98159 0.92718 0.92646 0.92713 0.90938 0.92747 0.92686 0.92142 0.91511 0.91488 0.92583 0.92921 0.77464 0.87427 0.86674 0.95710 0.95701 0.92984 0.86617 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.69 2.92 -90.62 -0.26 -0.95 16 3 C -0.15 -1.11 8.95 37.16 0.33 -0.77 16 4 C -0.13 -1.03 4.80 -26.73 -0.13 -1.16 16 5 C 0.13 1.39 4.67 -4.04 -0.02 1.37 16 6 N -0.76 -9.86 5.73 -58.63 -0.34 -10.20 16 7 C 0.18 3.04 6.65 -83.79 -0.56 2.48 16 8 C -0.20 -3.48 9.31 -39.38 -0.37 -3.84 16 9 C -0.08 -1.66 9.69 -39.61 -0.38 -2.05 16 10 C -0.09 -1.93 5.07 -104.59 -0.53 -2.46 16 11 C 0.05 1.41 5.10 -29.03 -0.15 1.27 16 12 C -0.51 -14.64 9.09 -34.44 -0.31 -14.95 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.08 -1.64 9.69 -39.62 -0.38 -2.02 16 21 C -0.19 -3.42 9.90 -39.38 -0.39 -3.81 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 6.56 -51.93 -0.34 0.13 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.62 6.38 -51.93 -0.33 0.29 16 32 H 0.05 0.61 7.94 -51.93 -0.41 0.19 16 33 H 0.39 4.38 8.49 -40.82 -0.35 4.03 16 34 H 0.11 1.67 6.73 -52.49 -0.35 1.32 16 35 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 36 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 328.00 15.07 4.94 4.94 Total: -1.00 -30.68 328.00 -9.40 -40.08 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.82 Total: 0.51 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -2.91 Total: -25.98 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.40 Total: -36.54 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.68 -9.40 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902227676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.589 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds