Wall clock time and date at job start Mon Mar 30 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 C 1.52996 * 109.46806 * 120.00021 * 2 1 3 5 5 C 1.53002 * 109.46969 * 174.99874 * 4 2 1 6 6 N 1.46506 * 109.47035 * 179.97438 * 5 4 2 7 7 C 1.39673 * 119.99605 * 180.02562 * 6 5 4 8 8 C 1.38914 * 120.07707 * 359.72057 * 7 6 5 9 9 C 1.38106 * 119.92380 * 179.76726 * 8 7 6 10 10 C 1.38287 * 120.07267 * 0.51577 * 9 8 7 11 11 C 1.50701 * 119.92365 * 179.72214 * 10 9 8 12 12 C 1.50700 * 109.47054 * 270.02104 * 11 10 9 13 13 H 1.08007 * 120.00062 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00347 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99604 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00234 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46762 * 89.99753 * 16 14 12 18 18 H 1.48501 * 109.46735 * 209.99882 * 16 14 12 19 19 H 1.48500 * 109.46894 * 329.99867 * 16 14 12 20 20 C 1.38283 * 120.15072 * 359.74237 * 10 9 8 21 21 C 1.38101 * 120.07597 * 359.97438 * 20 10 9 22 22 H 1.08998 * 109.47609 * 300.00075 * 1 2 3 23 23 H 1.09002 * 109.47435 * 60.00013 * 1 2 3 24 24 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47001 * 239.99492 * 2 1 3 26 26 H 1.08992 * 109.47259 * 299.99722 * 3 2 1 27 27 H 1.09001 * 109.46772 * 60.00021 * 3 2 1 28 28 H 1.08998 * 109.46500 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47298 * 55.00094 * 4 2 1 30 30 H 1.09004 * 109.47552 * 294.99966 * 4 2 1 31 31 H 1.09004 * 109.46930 * 59.99996 * 5 4 2 32 32 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 33 33 H 0.96999 * 120.00080 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.03713 * 0.02562 * 8 7 6 35 35 H 1.07994 * 119.96460 * 180.25714 * 9 8 7 36 36 H 1.08994 * 109.47299 * 30.02087 * 11 10 9 37 37 H 1.09002 * 109.47442 * 150.02258 * 11 10 9 38 38 H 0.97006 * 119.99840 * 180.02562 * 15 14 12 39 39 H 1.08009 * 119.96048 * 180.02562 * 20 10 9 40 40 H 1.08005 * 120.03673 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.8311 1.1880 6 7 4.0531 -1.5212 2.3845 7 6 5.4220 -1.7403 2.5544 8 6 6.3213 -1.3097 1.5872 9 6 7.6746 -1.5238 1.7607 10 6 8.1339 -2.1754 2.8906 11 6 9.6108 -2.4127 3.0736 12 6 9.9860 -3.7383 2.4628 13 1 9.2304 -4.3482 1.9898 14 6 11.2936 -4.1731 2.5086 15 7 12.2135 -3.4308 3.0849 16 14 11.7585 -5.8166 1.7521 17 1 12.1354 -5.6178 0.3295 18 1 12.9084 -6.3948 2.4928 19 1 10.6012 -6.7437 1.8326 20 6 7.2409 -2.6101 3.8529 21 6 5.8868 -2.3941 3.6885 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4424 0.0005 29 1 1.6053 -1.7198 1.2951 30 1 1.7515 -0.1583 2.1370 31 1 3.9994 0.1675 1.1421 32 1 3.8531 -1.3940 0.3003 33 1 3.4258 -1.8259 3.0586 34 1 5.9629 -0.8045 0.7025 35 1 8.3747 -1.1856 1.0111 36 1 10.1702 -1.6157 2.5839 37 1 9.8482 -2.4227 4.1374 38 1 13.1336 -3.7365 3.1169 39 1 7.6030 -3.1183 4.7345 40 1 5.1899 -2.7343 4.4403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902227676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:22 Heat of formation + Delta-G solvation = -23.780337 kcal Electronic energy + Delta-G solvation = -16980.658131 eV Core-core repulsion = 14372.061503 eV Total energy + Delta-G solvation = -2608.596629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32515 -38.21390 -36.25306 -34.89838 -32.32644 -31.63924 -29.88294 -28.01754 -27.54923 -24.93591 -24.39318 -22.75922 -21.47973 -20.86114 -18.48230 -18.05410 -16.93440 -16.62895 -16.39506 -15.77584 -15.26605 -15.09991 -14.80689 -14.49717 -14.26280 -14.16863 -13.87806 -13.47476 -13.18088 -13.17140 -13.02752 -12.59838 -12.54064 -12.41317 -12.38383 -11.71938 -11.62665 -11.61962 -11.50162 -11.44741 -11.33330 -10.58041 -10.52052 -9.68448 -8.29854 -7.94880 -6.30063 0.67182 0.89017 1.39838 1.41351 1.53027 2.41815 2.60567 3.12820 3.16027 3.88279 3.97074 4.06647 4.14151 4.24168 4.36965 4.49305 4.53828 4.66691 4.73200 4.78562 4.80809 4.83599 4.95865 4.99510 5.06854 5.16167 5.17370 5.19977 5.33270 5.37880 5.40884 5.48003 5.52192 5.56009 5.70313 5.81373 6.04660 6.23446 6.25463 6.59133 6.83292 6.99381 7.38242 8.92296 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.042100 B = 0.003480 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.916526 B = 8043.317877 C = 8150.520095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.116 4.116 5 C 0.124 3.876 6 N -0.746 5.746 7 C 0.195 3.805 8 C -0.195 4.195 9 C -0.090 4.090 10 C -0.124 4.124 11 C 0.063 3.937 12 C -0.526 4.526 13 H 0.052 0.948 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.089 4.089 21 C -0.191 4.191 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.405 0.595 34 H 0.132 0.868 35 H 0.109 0.891 36 H -0.003 1.003 37 H -0.002 1.002 38 H 0.265 0.735 39 H 0.111 0.889 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.784 6.665 -4.807 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.154 4.154 5 C 0.000 4.000 6 N -0.378 5.378 7 C 0.093 3.907 8 C -0.218 4.218 9 C -0.109 4.109 10 C -0.125 4.125 11 C 0.026 3.974 12 C -0.564 4.564 13 H 0.070 0.930 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.108 4.108 21 C -0.214 4.214 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.240 0.760 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.661 6.780 -4.947 25.105 hybrid contribution 0.796 -0.818 0.058 1.143 sum -22.864 5.962 -4.889 24.129 Atomic orbital electron populations 1.21816 0.94249 1.02022 1.02162 1.21036 0.96415 0.96263 0.97496 1.21928 1.01034 0.95886 1.02101 1.21755 0.92856 1.01561 0.99219 1.21433 0.95103 0.96192 0.87253 1.44520 1.02537 1.65830 1.24926 1.17723 0.84955 0.94503 0.93520 1.20668 0.92116 1.08162 1.00840 1.20836 0.95461 0.98043 0.96547 1.20142 0.96508 1.00001 0.95892 1.17980 0.88568 0.95515 0.95294 1.21456 0.93847 1.04372 1.36737 0.92962 1.25964 0.96410 1.01408 0.95874 1.70092 1.02243 1.39668 1.45297 0.85435 0.77931 0.79089 0.78533 1.19661 1.20394 1.19052 1.20842 0.93025 0.98473 0.98481 1.20681 0.95101 1.06443 0.99146 0.92448 0.92180 0.92455 0.91127 0.92173 0.92533 0.92909 0.90967 0.90910 0.92538 0.93205 0.75986 0.84982 0.87276 0.98459 0.98377 0.92643 0.87061 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.09 -1.12 2.92 -10.79 -0.03 -1.15 16 3 C -0.15 -1.88 8.95 71.98 0.64 -1.23 16 4 C -0.12 -1.53 4.80 30.59 0.15 -1.39 16 5 C 0.12 2.30 4.67 86.38 0.40 2.70 16 6 N -0.75 -16.80 5.73 -339.39 -1.95 -18.74 16 7 C 0.20 6.08 6.65 38.22 0.25 6.33 16 8 C -0.20 -6.68 9.31 22.40 0.21 -6.47 16 9 C -0.09 -3.77 9.69 22.25 0.22 -3.55 16 10 C -0.12 -5.82 5.07 -19.84 -0.10 -5.92 16 11 C 0.06 3.59 5.10 29.10 0.15 3.74 16 12 C -0.53 -31.42 9.09 25.60 0.23 -31.18 16 13 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.00 0.06 5.46 84.66 0.46 0.52 16 15 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 16 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 C -0.09 -3.70 9.69 22.25 0.22 -3.48 16 21 C -0.19 -6.37 9.90 22.40 0.22 -6.15 16 22 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.73 6.56 -2.39 -0.02 0.71 16 29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.09 6.38 -2.38 -0.02 1.07 16 32 H 0.05 0.99 7.94 -2.39 -0.02 0.97 16 33 H 0.40 7.40 8.49 -92.71 -0.79 6.61 16 34 H 0.13 3.80 6.73 -2.91 -0.02 3.78 16 35 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 36 H 0.00 -0.18 8.08 -2.39 -0.02 -0.19 16 37 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 38 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 39 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -67.44 328.00 4.26 -63.18 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.21 Total: 13.67 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 3.68 Total: -48.03 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -1.66 Total: -76.46 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -67.44 4.26 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902227676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.402 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds