Wall clock time and date at job start Mon Mar 30 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47226 * 2 1 4 4 C 1.53005 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46730 * 55.00708 * 4 3 2 6 6 C 1.53003 * 109.46556 * 175.00331 * 4 3 2 7 7 N 1.46500 * 109.47172 * 295.00001 * 4 3 2 8 8 C 1.39676 * 119.99636 * 154.99984 * 7 4 3 9 9 C 1.38906 * 120.07135 * 179.97438 * 8 7 4 10 10 C 1.38111 * 119.92343 * 180.02562 * 9 8 7 11 11 C 1.38288 * 120.07382 * 0.28047 * 10 9 8 12 12 C 1.50698 * 119.92407 * 179.69843 * 11 10 9 13 13 C 1.50695 * 109.47077 * 90.00107 * 12 11 10 14 14 H 1.08001 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00403 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00253 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47046 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46895 * 119.99964 * 17 15 13 20 20 H 1.48502 * 109.47138 * 239.99653 * 17 15 13 21 21 C 1.38286 * 120.14755 * 359.44532 * 11 10 9 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 11 10 23 23 H 1.08999 * 109.47315 * 59.99784 * 1 2 3 24 24 H 1.08997 * 109.47378 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47311 * 299.99960 * 1 2 3 26 26 H 1.08999 * 109.47311 * 240.00040 * 2 1 3 27 27 H 1.08999 * 109.47315 * 120.00215 * 2 1 3 28 28 H 1.09003 * 109.46721 * 60.00273 * 3 2 1 29 29 H 1.08999 * 109.47150 * 300.00316 * 3 2 1 30 30 H 1.08998 * 109.46892 * 180.02562 * 6 4 3 31 31 H 1.09005 * 109.47269 * 299.99526 * 6 4 3 32 32 H 1.08996 * 109.47541 * 60.00263 * 6 4 3 33 33 H 0.96995 * 120.00066 * 335.00579 * 7 4 3 34 34 H 1.07999 * 120.03932 * 0.04675 * 9 8 7 35 35 H 1.08002 * 119.96028 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46776 * 210.00059 * 12 11 10 37 37 H 1.09003 * 109.47041 * 330.00009 * 12 11 10 38 38 H 0.96990 * 120.00273 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.96005 * 180.25011 * 21 11 10 40 40 H 1.07998 * 120.03717 * 179.70130 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1250 7 7 4.0578 0.8589 1.2527 8 6 5.3242 0.2717 1.3028 9 6 5.7884 -0.2816 2.4893 10 6 7.0413 -0.8609 2.5354 11 6 7.8356 -0.8854 1.4037 12 6 9.2048 -1.5123 1.4596 13 6 9.1020 -2.9752 1.1129 14 1 8.1413 -3.4076 0.8753 15 6 10.2345 -3.7615 1.0979 16 7 11.4047 -3.2346 1.3857 17 14 10.1071 -5.5747 0.6673 18 1 8.6902 -5.9180 0.3851 19 1 10.9341 -5.8577 -0.5332 20 1 10.5957 -6.3900 1.8083 21 6 7.3742 -0.3405 0.2194 22 6 6.1223 0.2404 0.1663 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 5.1700 2.8795 -0.1250 31 1 3.7171 3.3138 -1.0566 32 1 3.7164 3.4691 0.7166 33 1 3.5014 0.8802 2.0469 34 1 5.1703 -0.2591 3.3746 35 1 7.4031 -1.2909 3.4578 36 1 9.8616 -1.0150 0.7459 37 1 9.6128 -1.4049 2.4647 38 1 12.2013 -3.7878 1.3755 39 1 7.9955 -0.3648 -0.6637 40 1 5.7645 0.6701 -0.7577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:46 Heat of formation + Delta-G solvation = -5.335441 kcal Electronic energy + Delta-G solvation = -17345.344892 eV Core-core repulsion = 14737.548094 eV Total energy + Delta-G solvation = -2607.796798 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.10714 -37.13044 -34.19847 -32.90171 -31.42161 -30.11081 -29.25292 -26.90986 -25.91004 -22.95086 -22.49043 -21.76982 -20.56435 -19.76922 -17.11091 -16.20745 -15.93479 -15.02242 -14.71472 -14.39530 -14.04002 -13.89312 -13.60017 -13.05244 -12.81935 -12.64023 -12.49306 -12.34025 -12.23561 -11.86440 -11.63477 -11.24704 -11.15849 -10.99158 -10.83896 -10.73147 -10.60848 -10.46944 -10.02439 -9.72386 -9.36093 -8.95025 -8.34773 -8.16956 -6.68728 -5.94374 -3.98842 2.18727 2.43970 3.33768 3.41161 3.46808 3.70784 4.47262 4.52261 4.71821 4.80840 4.83866 5.14533 5.27103 5.35297 5.38091 5.42753 5.55836 5.61462 5.61874 5.66952 5.71382 5.83081 5.91516 6.01380 6.12273 6.13115 6.18024 6.27139 6.39269 6.54265 6.78134 6.93301 7.36348 7.36858 7.51804 7.66889 7.93293 8.01220 8.03290 8.14585 8.45084 9.07450 9.64530 11.13843 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029771 B = 0.004276 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.274965 B = 6547.049208 C = 7011.159110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.125 4.125 4 C 0.151 3.849 5 H 0.076 0.924 6 C -0.169 4.169 7 N -0.751 5.751 8 C 0.185 3.815 9 C -0.195 4.195 10 C -0.080 4.080 11 C -0.086 4.086 12 C 0.053 3.947 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.081 4.081 22 C -0.197 4.197 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.391 0.609 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.114 0.886 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.466 10.147 -2.143 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.163 4.163 4 C 0.045 3.955 5 H 0.094 0.906 6 C -0.228 4.228 7 N -0.383 5.383 8 C 0.085 3.915 9 C -0.218 4.218 10 C -0.099 4.099 11 C -0.088 4.088 12 C 0.016 3.984 13 C -0.545 4.545 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.099 4.099 22 C -0.219 4.219 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.305 10.161 -2.322 21.064 hybrid contribution -0.182 -1.027 0.072 1.046 sum -18.486 9.134 -2.250 20.742 Atomic orbital electron populations 1.21779 0.96124 1.01560 1.01476 1.21516 0.95334 0.96622 1.02752 1.21890 0.94582 0.97355 1.02432 1.20801 0.92948 0.93570 0.88182 0.90582 1.22304 1.02269 0.96919 1.01282 1.44503 1.16100 1.66069 1.11629 1.17599 0.85425 0.94378 0.94070 1.20454 0.98137 1.07026 0.96161 1.20821 0.92987 0.97482 0.98565 1.20441 0.99119 0.96926 0.92268 1.18244 0.87435 0.94858 0.97862 1.21185 0.93603 0.93523 1.46181 0.92518 1.25025 0.95394 0.98570 0.95519 1.69972 0.98327 1.35829 1.49468 0.86522 0.78135 0.85316 0.78000 1.19719 1.21025 1.21029 1.20846 0.94657 0.96647 0.97794 1.20540 0.96137 1.08417 0.96779 0.92940 0.92826 0.92953 0.91965 0.91536 0.91789 0.90976 0.91966 0.92414 0.92744 0.77525 0.87555 0.86702 0.95736 0.95739 0.93046 0.86756 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.15 0.37 -0.79 16 2 C -0.12 -1.12 5.82 -26.73 -0.16 -1.27 16 3 C -0.12 -1.04 4.75 -26.73 -0.13 -1.16 16 4 C 0.15 1.58 2.27 -67.93 -0.15 1.43 16 5 H 0.08 0.88 6.48 -51.93 -0.34 0.55 16 6 C -0.17 -1.68 9.43 37.16 0.35 -1.33 16 7 N -0.75 -9.31 4.70 -52.16 -0.25 -9.56 16 8 C 0.18 3.00 6.64 -83.79 -0.56 2.45 16 9 C -0.20 -3.39 9.90 -39.38 -0.39 -3.78 16 10 C -0.08 -1.62 9.69 -39.61 -0.38 -2.01 16 11 C -0.09 -1.94 5.07 -104.59 -0.53 -2.47 16 12 C 0.05 1.41 5.10 -29.04 -0.15 1.26 16 13 C -0.51 -14.58 9.09 -34.44 -0.31 -14.89 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.08 -1.64 9.69 -39.61 -0.38 -2.03 16 22 C -0.20 -3.42 8.85 -39.38 -0.35 -3.77 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.73 7.71 -51.93 -0.40 0.33 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.39 4.28 8.61 -40.82 -0.35 3.93 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.02 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.11 1.66 6.12 -52.49 -0.32 1.33 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -30.31 328.72 -9.29 -39.60 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.84 Total: 1.21 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -2.87 Total: -26.85 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.49 Total: -35.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.31 -9.29 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.265 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds