Wall clock time and date at job start Mon Mar 30 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47226 * 2 1 4 4 C 1.53005 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46730 * 55.00708 * 4 3 2 6 6 C 1.53003 * 109.46556 * 175.00331 * 4 3 2 7 7 N 1.46500 * 109.47172 * 295.00001 * 4 3 2 8 8 C 1.39676 * 119.99636 * 154.99984 * 7 4 3 9 9 C 1.38906 * 120.07135 * 179.97438 * 8 7 4 10 10 C 1.38111 * 119.92343 * 180.02562 * 9 8 7 11 11 C 1.38288 * 120.07382 * 0.28047 * 10 9 8 12 12 C 1.50698 * 119.92407 * 179.69843 * 11 10 9 13 13 C 1.50695 * 109.47077 * 90.00107 * 12 11 10 14 14 H 1.08001 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00403 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00253 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47046 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46895 * 119.99964 * 17 15 13 20 20 H 1.48502 * 109.47138 * 239.99653 * 17 15 13 21 21 C 1.38286 * 120.14755 * 359.44532 * 11 10 9 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 11 10 23 23 H 1.08999 * 109.47315 * 59.99784 * 1 2 3 24 24 H 1.08997 * 109.47378 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47311 * 299.99960 * 1 2 3 26 26 H 1.08999 * 109.47311 * 240.00040 * 2 1 3 27 27 H 1.08999 * 109.47315 * 120.00215 * 2 1 3 28 28 H 1.09003 * 109.46721 * 60.00273 * 3 2 1 29 29 H 1.08999 * 109.47150 * 300.00316 * 3 2 1 30 30 H 1.08998 * 109.46892 * 180.02562 * 6 4 3 31 31 H 1.09005 * 109.47269 * 299.99526 * 6 4 3 32 32 H 1.08996 * 109.47541 * 60.00263 * 6 4 3 33 33 H 0.96995 * 120.00066 * 335.00579 * 7 4 3 34 34 H 1.07999 * 120.03932 * 0.04675 * 9 8 7 35 35 H 1.08002 * 119.96028 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46776 * 210.00059 * 12 11 10 37 37 H 1.09003 * 109.47041 * 330.00009 * 12 11 10 38 38 H 0.96990 * 120.00273 * 179.97438 * 16 15 13 39 39 H 1.08002 * 119.96005 * 180.25011 * 21 11 10 40 40 H 1.07998 * 120.03717 * 179.70130 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1250 7 7 4.0578 0.8589 1.2527 8 6 5.3242 0.2717 1.3028 9 6 5.7884 -0.2816 2.4893 10 6 7.0413 -0.8609 2.5354 11 6 7.8356 -0.8854 1.4037 12 6 9.2048 -1.5123 1.4596 13 6 9.1020 -2.9752 1.1129 14 1 8.1413 -3.4076 0.8753 15 6 10.2345 -3.7615 1.0979 16 7 11.4047 -3.2346 1.3857 17 14 10.1071 -5.5747 0.6673 18 1 8.6902 -5.9180 0.3851 19 1 10.9341 -5.8577 -0.5332 20 1 10.5957 -6.3900 1.8083 21 6 7.3742 -0.3405 0.2194 22 6 6.1223 0.2404 0.1663 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 5.1700 2.8795 -0.1250 31 1 3.7171 3.3138 -1.0566 32 1 3.7164 3.4691 0.7166 33 1 3.5014 0.8802 2.0469 34 1 5.1703 -0.2591 3.3746 35 1 7.4031 -1.2909 3.4578 36 1 9.8616 -1.0150 0.7459 37 1 9.6128 -1.4049 2.4647 38 1 12.2013 -3.7878 1.3755 39 1 7.9955 -0.3648 -0.6637 40 1 5.7645 0.6701 -0.7577 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:45 Heat of formation + Delta-G solvation = -21.135580 kcal Electronic energy + Delta-G solvation = -17346.030037 eV Core-core repulsion = 14737.548094 eV Total energy + Delta-G solvation = -2608.481944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.43763 -38.23785 -35.61062 -34.54713 -32.70652 -31.62051 -30.74944 -27.94389 -27.34205 -24.79828 -23.85151 -22.58379 -21.83296 -21.03639 -18.50126 -18.29516 -16.98954 -16.71470 -15.84861 -15.74486 -15.18316 -15.09140 -14.66893 -14.50508 -14.27797 -14.06345 -13.71984 -13.46608 -13.22476 -13.16280 -12.95982 -12.83288 -12.55825 -12.39012 -12.30319 -11.86434 -11.64971 -11.57287 -11.48347 -11.42521 -11.32176 -10.58530 -10.51920 -9.66524 -8.28898 -7.91943 -6.30111 0.68908 0.91629 1.39645 1.39770 1.53949 2.41686 2.64110 3.12651 3.17839 3.78902 4.07295 4.11056 4.18975 4.24593 4.43155 4.52025 4.55636 4.66615 4.70644 4.79763 4.80292 4.90145 4.94373 5.02782 5.06536 5.14357 5.21203 5.29191 5.35624 5.38925 5.41423 5.43667 5.50838 5.57969 5.71624 5.82752 6.07589 6.24900 6.26293 6.64138 6.83521 7.03369 7.38268 8.92387 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029771 B = 0.004276 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.274965 B = 6547.049208 C = 7011.159110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.115 4.115 4 C 0.146 3.854 5 H 0.067 0.933 6 C -0.165 4.165 7 N -0.736 5.736 8 C 0.203 3.797 9 C -0.193 4.193 10 C -0.090 4.090 11 C -0.125 4.125 12 C 0.064 3.936 13 C -0.525 4.525 14 H 0.052 0.948 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.090 4.090 22 C -0.195 4.195 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.403 0.597 34 H 0.137 0.863 35 H 0.109 0.891 36 H -0.004 1.004 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.107 0.893 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.495 10.539 -2.587 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.153 4.153 4 C 0.041 3.959 5 H 0.085 0.915 6 C -0.224 4.224 7 N -0.368 5.368 8 C 0.100 3.900 9 C -0.216 4.216 10 C -0.108 4.108 11 C -0.127 4.127 12 C 0.027 3.973 13 C -0.563 4.563 14 H 0.070 0.930 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.109 4.109 22 C -0.217 4.217 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.238 0.762 34 H 0.155 0.845 35 H 0.127 0.873 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.380 10.581 -2.766 24.015 hybrid contribution 0.643 -1.037 0.201 1.236 sum -20.737 9.545 -2.565 22.971 Atomic orbital electron populations 1.21754 0.95004 1.01694 1.02247 1.21507 0.96353 0.96842 1.01613 1.21835 0.92493 0.97144 1.03844 1.21000 0.94602 0.93632 0.86697 0.91489 1.22259 1.00922 0.96482 1.02723 1.44608 1.14496 1.64574 1.13094 1.17669 0.86467 0.92685 0.93141 1.20660 0.97104 1.06055 0.97753 1.20827 0.94198 0.98214 0.97591 1.20123 0.97923 1.00209 0.94479 1.17975 0.89737 0.94445 0.95174 1.21485 0.93574 0.94843 1.46400 0.92987 1.25963 0.94871 1.03673 0.95147 1.70097 0.99148 1.37825 1.50236 0.85386 0.78437 0.79080 0.78080 1.19033 1.20084 1.20076 1.20830 0.96028 0.97270 0.96781 1.20684 0.94973 1.07788 0.98302 0.92090 0.93100 0.92248 0.92979 0.92847 0.90621 0.89280 0.93974 0.90419 0.92070 0.76174 0.84471 0.87256 0.98529 0.98470 0.92654 0.87459 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.13 -1.90 5.82 30.59 0.18 -1.73 16 3 C -0.12 -1.49 4.75 30.60 0.15 -1.34 16 4 C 0.15 2.59 2.27 44.99 0.10 2.69 16 5 H 0.07 1.36 6.48 -2.39 -0.02 1.35 16 6 C -0.17 -2.75 9.43 71.98 0.68 -2.08 16 7 N -0.74 -15.97 4.70 -318.95 -1.50 -17.47 16 8 C 0.20 6.18 6.64 38.21 0.25 6.43 16 9 C -0.19 -6.40 9.90 22.40 0.22 -6.18 16 10 C -0.09 -3.70 9.69 22.25 0.22 -3.49 16 11 C -0.13 -5.92 5.07 -19.84 -0.10 -6.02 16 12 C 0.06 3.61 5.10 29.10 0.15 3.76 16 13 C -0.52 -31.42 9.09 25.60 0.23 -31.19 16 14 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 17 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C -0.09 -3.77 9.69 22.25 0.22 -3.56 16 22 C -0.20 -6.58 8.85 22.40 0.20 -6.39 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.95 7.75 -2.39 -0.02 0.93 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.88 7.71 -2.39 -0.02 0.86 16 31 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.40 7.28 8.61 -92.71 -0.80 6.48 16 34 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.00 -0.22 8.09 -2.39 -0.02 -0.24 16 37 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 38 H 0.26 15.34 8.31 -92.72 -0.77 14.57 16 39 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.13 3.79 6.12 -2.91 -0.02 3.77 16 Total: -1.00 -67.52 328.72 4.67 -62.85 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.19 Total: 14.34 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 3.67 Total: -49.69 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -1.21 Total: -75.23 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -67.52 4.67 -62.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.713 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds