Wall clock time and date at job start Mon Mar 30 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46840 * 2 1 4 4 C 1.53006 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46884 * 305.00622 * 4 3 2 6 6 C 1.52997 * 109.47127 * 184.99870 * 4 3 2 7 7 N 1.46497 * 109.46631 * 65.00087 * 4 3 2 8 8 C 1.39679 * 120.00066 * 204.99939 * 7 4 3 9 9 C 1.38915 * 120.07144 * 359.72558 * 8 7 4 10 10 C 1.38101 * 119.92476 * 179.77260 * 9 8 7 11 11 C 1.38284 * 120.07426 * 0.50230 * 10 9 8 12 12 C 1.50703 * 119.92562 * 179.76982 * 11 10 9 13 13 C 1.50695 * 109.47044 * 269.97780 * 12 11 10 14 14 H 1.08007 * 120.00214 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00306 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00725 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99634 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46967 * 89.99896 * 17 15 13 19 19 H 1.48505 * 109.47027 * 210.00001 * 17 15 13 20 20 H 1.48499 * 109.47207 * 329.99752 * 17 15 13 21 21 C 1.38285 * 120.15151 * 359.74964 * 11 10 9 22 22 C 1.38105 * 120.07251 * 359.97438 * 21 11 10 23 23 H 1.09000 * 109.47097 * 59.99927 * 1 2 3 24 24 H 1.08998 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47293 * 300.00267 * 1 2 3 26 26 H 1.08996 * 109.47312 * 240.00288 * 2 1 3 27 27 H 1.09006 * 109.47002 * 119.99620 * 2 1 3 28 28 H 1.08996 * 109.46933 * 60.00056 * 3 2 1 29 29 H 1.09000 * 109.47335 * 299.99927 * 3 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 33 33 H 0.96996 * 120.00792 * 25.00239 * 7 4 3 34 34 H 1.08002 * 120.03528 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.96527 * 180.25293 * 10 9 8 36 36 H 1.09000 * 109.47279 * 29.97987 * 12 11 10 37 37 H 1.09002 * 109.47045 * 149.97957 * 12 11 10 38 38 H 0.97003 * 120.00298 * 179.97438 * 16 15 13 39 39 H 1.07999 * 119.96836 * 179.97438 * 21 11 10 40 40 H 1.08002 * 120.04034 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8532 0.8426 6 6 4.0799 2.8796 0.1263 7 7 4.0587 0.8587 -1.2509 8 6 5.3252 0.2716 -1.2999 9 6 6.1247 0.2455 -0.1643 10 6 7.3745 -0.3400 -0.2149 11 6 7.8343 -0.8907 -1.3970 12 6 9.2008 -1.5242 -1.4498 13 6 10.2223 -0.4839 -1.8308 14 1 9.9131 0.5344 -2.0157 15 6 11.5518 -0.8315 -1.9422 16 7 12.4435 0.0764 -2.2741 17 14 12.0867 -2.5924 -1.6216 18 1 12.0353 -3.3639 -2.8895 19 1 13.4747 -2.5998 -1.0936 20 1 11.1755 -3.2133 -0.6270 21 6 7.0431 -0.8619 -2.5308 22 6 5.7900 -0.2830 -2.4856 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 5.1699 2.8797 0.1263 31 1 3.7162 3.3140 1.0575 32 1 3.7168 3.4690 -0.7157 33 1 3.5030 0.8798 -2.0456 34 1 5.7678 0.6790 0.7583 35 1 7.9950 -0.3642 0.6687 36 1 9.4486 -1.9356 -0.4714 37 1 9.2023 -2.3234 -2.1910 38 1 13.3789 -0.1682 -2.3522 39 1 7.4054 -1.2925 -3.4526 40 1 5.1727 -0.2604 -3.3715 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:48 Heat of formation + Delta-G solvation = -1.339947 kcal Electronic energy + Delta-G solvation = -17352.398017 eV Core-core repulsion = 14744.774477 eV Total energy + Delta-G solvation = -2607.623541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.16775 -37.18977 -34.25868 -32.85714 -31.51742 -30.21087 -29.57721 -26.97144 -26.19779 -22.77173 -22.43826 -21.78103 -20.54495 -19.76093 -17.15571 -16.67638 -15.97693 -15.05992 -14.70595 -14.33934 -14.06130 -13.93290 -13.64213 -13.18701 -12.86621 -12.61387 -12.57303 -12.41466 -12.19182 -12.15133 -11.62924 -11.46748 -11.39078 -11.08135 -10.89637 -10.75555 -10.55888 -10.20298 -10.03379 -9.86582 -9.39779 -9.04505 -8.50990 -8.23050 -6.71039 -5.99957 -3.97738 2.12682 2.36643 3.33579 3.40931 3.44894 3.67269 4.48194 4.49529 4.61075 4.77159 4.80371 5.11744 5.24827 5.32303 5.33140 5.41402 5.51960 5.57497 5.58918 5.64497 5.70491 5.79722 5.89260 5.97422 6.02511 6.09473 6.14316 6.25694 6.29068 6.45345 6.68724 6.85481 7.10928 7.13554 7.24262 7.48130 7.78331 7.78597 7.88114 8.09552 8.60168 9.07021 9.61368 11.13277 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043524 B = 0.004043 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.175484 B = 6923.771321 C = 7153.534827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.125 4.125 4 C 0.151 3.849 5 H 0.076 0.924 6 C -0.170 4.170 7 N -0.750 5.750 8 C 0.189 3.811 9 C -0.196 4.196 10 C -0.078 4.078 11 C -0.082 4.082 12 C 0.020 3.980 13 C -0.508 4.508 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.077 4.077 22 C -0.195 4.195 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.392 0.608 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.116 0.884 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.867 1.025 4.709 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.163 4.163 4 C 0.045 3.955 5 H 0.094 0.906 6 C -0.229 4.229 7 N -0.382 5.382 8 C 0.089 3.911 9 C -0.218 4.218 10 C -0.096 4.096 11 C -0.084 4.084 12 C -0.017 4.017 13 C -0.546 4.546 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.096 4.096 22 C -0.217 4.217 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.697 1.114 4.872 22.265 hybrid contribution 0.289 -0.686 -0.242 0.783 sum -21.408 0.428 4.631 21.907 Atomic orbital electron populations 1.21783 0.96113 1.01527 1.01547 1.21514 0.95348 0.96661 1.02631 1.21895 0.94572 0.97318 1.02524 1.20808 0.92921 0.93667 0.88063 0.90600 1.22314 1.02441 0.96815 1.01346 1.44525 1.16091 1.65880 1.11714 1.17620 0.85461 0.93987 0.94052 1.20533 0.96106 1.08192 0.96996 1.20812 0.94279 0.96550 0.97999 1.20025 0.96622 0.99225 0.92540 1.18698 0.89890 0.96118 0.97025 1.21031 0.90548 0.96671 1.46395 0.90919 1.25022 0.96595 0.97129 0.94725 1.69911 1.01991 1.33607 1.48766 0.86805 0.77882 0.85700 0.79116 1.20259 1.21393 1.18922 1.20790 0.92702 0.98047 0.98039 1.20447 0.98141 1.06969 0.96166 0.92915 0.92858 0.92913 0.91581 0.92022 0.90935 0.91726 0.91825 0.92370 0.92678 0.77458 0.87159 0.86666 0.95829 0.96266 0.92751 0.86614 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -1.03 5.82 -26.73 -0.16 -1.18 16 3 C -0.13 -1.00 4.75 -26.73 -0.13 -1.13 16 4 C 0.15 1.56 2.27 -67.93 -0.15 1.40 16 5 H 0.08 0.84 6.50 -51.93 -0.34 0.50 16 6 C -0.17 -1.76 9.42 37.16 0.35 -1.41 16 7 N -0.75 -9.12 4.70 -52.17 -0.25 -9.36 16 8 C 0.19 3.00 6.64 -83.78 -0.56 2.45 16 9 C -0.20 -3.34 8.84 -39.38 -0.35 -3.69 16 10 C -0.08 -1.54 9.69 -39.61 -0.38 -1.92 16 11 C -0.08 -1.80 5.07 -104.59 -0.53 -2.33 16 12 C 0.02 0.49 4.17 -29.04 -0.12 0.37 16 13 C -0.51 -14.81 9.65 -34.44 -0.33 -15.15 16 14 H 0.07 2.32 7.98 -52.48 -0.42 1.90 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 17 Si 0.88 21.84 27.47 -169.99 -4.67 17.18 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.26 -6.31 6.54 56.52 0.37 -5.95 16 21 C -0.08 -1.52 9.69 -39.61 -0.38 -1.91 16 22 C -0.19 -3.30 9.90 -39.38 -0.39 -3.69 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.61 7.75 -51.93 -0.40 0.21 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.79 7.68 -51.93 -0.40 0.40 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.39 4.19 8.61 -40.82 -0.35 3.84 16 34 H 0.11 1.64 6.10 -52.49 -0.32 1.32 16 35 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 37 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -31.12 325.05 -8.91 -40.03 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.81 Total: 1.76 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -2.86 Total: -27.03 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.53 Total: -36.83 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.12 -8.91 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.691 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds