Wall clock time and date at job start Mon Mar 30 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46840 * 2 1 4 4 C 1.53006 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46884 * 305.00622 * 4 3 2 6 6 C 1.52997 * 109.47127 * 184.99870 * 4 3 2 7 7 N 1.46497 * 109.46631 * 65.00087 * 4 3 2 8 8 C 1.39679 * 120.00066 * 204.99939 * 7 4 3 9 9 C 1.38915 * 120.07144 * 359.72558 * 8 7 4 10 10 C 1.38101 * 119.92476 * 179.77260 * 9 8 7 11 11 C 1.38284 * 120.07426 * 0.50230 * 10 9 8 12 12 C 1.50703 * 119.92562 * 179.76982 * 11 10 9 13 13 C 1.50695 * 109.47044 * 269.97780 * 12 11 10 14 14 H 1.08007 * 120.00214 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00306 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00725 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99634 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46967 * 89.99896 * 17 15 13 19 19 H 1.48505 * 109.47027 * 210.00001 * 17 15 13 20 20 H 1.48499 * 109.47207 * 329.99752 * 17 15 13 21 21 C 1.38285 * 120.15151 * 359.74964 * 11 10 9 22 22 C 1.38105 * 120.07251 * 359.97438 * 21 11 10 23 23 H 1.09000 * 109.47097 * 59.99927 * 1 2 3 24 24 H 1.08998 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47293 * 300.00267 * 1 2 3 26 26 H 1.08996 * 109.47312 * 240.00288 * 2 1 3 27 27 H 1.09006 * 109.47002 * 119.99620 * 2 1 3 28 28 H 1.08996 * 109.46933 * 60.00056 * 3 2 1 29 29 H 1.09000 * 109.47335 * 299.99927 * 3 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 6 4 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 6 4 3 33 33 H 0.96996 * 120.00792 * 25.00239 * 7 4 3 34 34 H 1.08002 * 120.03528 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.96527 * 180.25293 * 10 9 8 36 36 H 1.09000 * 109.47279 * 29.97987 * 12 11 10 37 37 H 1.09002 * 109.47045 * 149.97957 * 12 11 10 38 38 H 0.97003 * 120.00298 * 179.97438 * 16 15 13 39 39 H 1.07999 * 119.96836 * 179.97438 * 21 11 10 40 40 H 1.08002 * 120.04034 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8532 0.8426 6 6 4.0799 2.8796 0.1263 7 7 4.0587 0.8587 -1.2509 8 6 5.3252 0.2716 -1.2999 9 6 6.1247 0.2455 -0.1643 10 6 7.3745 -0.3400 -0.2149 11 6 7.8343 -0.8907 -1.3970 12 6 9.2008 -1.5242 -1.4498 13 6 10.2223 -0.4839 -1.8308 14 1 9.9131 0.5344 -2.0157 15 6 11.5518 -0.8315 -1.9422 16 7 12.4435 0.0764 -2.2741 17 14 12.0867 -2.5924 -1.6216 18 1 12.0353 -3.3639 -2.8895 19 1 13.4747 -2.5998 -1.0936 20 1 11.1755 -3.2133 -0.6270 21 6 7.0431 -0.8619 -2.5308 22 6 5.7900 -0.2830 -2.4856 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 5.1699 2.8797 0.1263 31 1 3.7162 3.3140 1.0575 32 1 3.7168 3.4690 -0.7157 33 1 3.5030 0.8798 -2.0456 34 1 5.7678 0.6790 0.7583 35 1 7.9950 -0.3642 0.6687 36 1 9.4486 -1.9356 -0.4714 37 1 9.2023 -2.3234 -2.1910 38 1 13.3789 -0.1682 -2.3522 39 1 7.4054 -1.2925 -3.4526 40 1 5.1727 -0.2604 -3.3715 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:48 Heat of formation + Delta-G solvation = -18.589023 kcal Electronic energy + Delta-G solvation = -17353.145993 eV Core-core repulsion = 14744.774477 eV Total energy + Delta-G solvation = -2608.371517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45548 -38.25975 -35.58574 -34.54293 -32.86551 -31.68734 -31.00092 -28.12843 -27.38185 -24.43191 -23.86454 -22.56287 -21.77998 -21.03695 -18.92929 -18.34148 -17.01090 -16.58449 -15.87296 -15.75540 -15.21586 -15.18952 -14.73396 -14.55815 -14.26822 -14.08746 -13.78067 -13.54382 -13.45639 -13.32257 -12.90215 -12.80203 -12.49941 -12.34120 -12.03416 -11.80794 -11.70109 -11.60183 -11.51969 -11.47540 -11.39369 -10.76445 -10.53701 -9.67341 -8.28173 -8.01707 -6.31551 0.68216 0.89918 1.36944 1.38936 1.51617 2.37486 2.62831 3.06661 3.14465 3.77971 4.06359 4.10448 4.18475 4.23678 4.40837 4.47201 4.53984 4.65686 4.68911 4.76954 4.79079 4.87286 4.93744 5.00675 5.05675 5.08968 5.12765 5.18411 5.28856 5.35980 5.37180 5.41050 5.50890 5.54989 5.61538 5.71780 6.08310 6.17342 6.32363 6.62098 6.75420 7.01656 7.31798 8.89443 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.043524 B = 0.004043 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.175484 B = 6923.771321 C = 7153.534827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.116 4.116 4 C 0.147 3.853 5 H 0.071 0.929 6 C -0.168 4.168 7 N -0.736 5.736 8 C 0.204 3.796 9 C -0.198 4.198 10 C -0.090 4.090 11 C -0.125 4.125 12 C 0.028 3.972 13 C -0.517 4.517 14 H 0.024 0.976 15 C 0.004 3.996 16 N -0.953 5.953 17 Si 0.953 3.047 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.247 1.247 21 C -0.089 4.089 22 C -0.196 4.196 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.402 0.598 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.267 0.733 39 H 0.114 0.886 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.436 0.379 5.288 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.154 4.154 4 C 0.042 3.958 5 H 0.089 0.911 6 C -0.226 4.226 7 N -0.368 5.368 8 C 0.101 3.899 9 C -0.220 4.220 10 C -0.108 4.108 11 C -0.127 4.127 12 C -0.009 4.009 13 C -0.555 4.555 14 H 0.043 0.957 15 C -0.193 4.193 16 N -0.594 5.594 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.171 1.171 21 C -0.107 4.107 22 C -0.219 4.219 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.238 0.762 34 H 0.150 0.850 35 H 0.130 0.870 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.325 0.486 5.454 24.934 hybrid contribution 0.934 -0.326 -0.419 1.074 sum -23.391 0.160 5.035 23.928 Atomic orbital electron populations 1.21758 0.95070 1.01754 1.02166 1.21497 0.96272 0.96603 1.01762 1.21836 0.92366 0.97407 1.03764 1.20992 0.94649 0.93361 0.86781 0.91127 1.22282 1.00744 0.96896 1.02705 1.44628 1.14590 1.64441 1.13113 1.17709 0.86492 0.92484 0.93237 1.20699 0.95221 1.07710 0.98413 1.20878 0.95542 0.97061 0.97349 1.19898 0.96084 1.02263 0.94423 1.18529 0.90629 0.95029 0.96741 1.21269 0.92141 0.95790 1.46262 0.95718 1.26027 0.96488 1.02423 0.94317 1.70072 1.02580 1.36376 1.50324 0.85621 0.77685 0.79310 0.79827 1.18952 1.20779 1.17050 1.20878 0.93826 0.98697 0.97337 1.20677 0.97374 1.06175 0.97639 0.92410 0.92910 0.92174 0.92686 0.92698 0.89332 0.90822 0.94350 0.90313 0.92279 0.76186 0.85010 0.87008 0.95723 0.95772 0.92445 0.86765 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.71 5.82 30.59 0.18 -1.53 16 3 C -0.12 -1.46 4.75 30.60 0.15 -1.31 16 4 C 0.15 2.62 2.27 44.99 0.10 2.72 16 5 H 0.07 1.38 6.50 -2.39 -0.02 1.36 16 6 C -0.17 -3.04 9.42 71.98 0.68 -2.36 16 7 N -0.74 -15.94 4.70 -318.95 -1.50 -17.44 16 8 C 0.20 6.12 6.64 38.21 0.25 6.38 16 9 C -0.20 -6.57 8.84 22.40 0.20 -6.37 16 10 C -0.09 -3.59 9.69 22.25 0.22 -3.38 16 11 C -0.12 -5.57 5.07 -19.84 -0.10 -5.67 16 12 C 0.03 1.41 4.17 29.10 0.12 1.53 16 13 C -0.52 -31.34 9.65 25.60 0.25 -31.09 16 14 H 0.02 1.67 7.98 -2.91 -0.02 1.65 16 15 C 0.00 0.23 5.47 84.65 0.46 0.69 16 16 N -0.95 -61.50 13.96 21.45 0.30 -61.21 16 17 Si 0.95 45.43 27.47 68.60 1.88 47.32 16 18 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 21 C -0.09 -3.52 9.69 22.25 0.22 -3.30 16 22 C -0.20 -6.37 9.90 22.40 0.22 -6.15 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.88 7.75 -2.39 -0.02 0.86 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.89 7.68 -2.39 -0.02 0.88 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.40 7.29 8.61 -92.71 -0.80 6.49 16 34 H 0.13 3.72 6.10 -2.91 -0.02 3.70 16 35 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.02 1.21 7.14 -2.39 -0.02 1.19 16 37 H 0.02 1.17 7.51 -2.39 -0.02 1.15 16 38 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -69.54 325.05 4.48 -65.07 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.14 Total: 17.11 kcal Atomic # 6 Polarization: -54.49 SS G_CDS: 3.65 Total: -50.84 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -1.20 Total: -78.65 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Total: -69.54 4.48 -65.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.476 kcal (2) G-P(sol) polarization free energy of solvation -69.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds