Wall clock time and date at job start Mon Mar 30 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48493 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47339 * 299.99925 * 3 2 1 6 6 H 1.48504 * 109.46924 * 59.99767 * 3 2 1 7 7 C 1.39817 * 120.00521 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00407 * 180.02562 * 7 2 1 9 9 C 1.39897 * 119.99402 * 0.02562 * 7 2 1 10 10 C 1.39461 * 126.97015 * 0.02666 * 9 7 2 11 11 N 1.32371 * 107.82501 * 179.97438 * 10 9 7 12 12 C 1.33335 * 109.89114 * 359.97438 * 11 10 9 13 13 S 1.76204 * 141.33025 * 180.02562 * 12 11 10 14 14 C 1.75801 * 90.88096 * 180.02562 * 13 12 11 15 15 C 1.32479 * 110.16615 * 359.96687 * 14 13 12 16 16 N 1.34682 * 109.60481 * 0.02562 * 12 11 10 17 17 C 1.52560 * 123.05148 * 180.02562 * 15 14 13 18 18 C 1.52940 * 108.79751 * 342.49212 * 17 15 14 19 19 C 1.53192 * 109.20622 * 51.01562 * 18 17 15 20 20 C 1.51558 * 124.83316 * 179.97438 * 14 13 12 21 21 H 0.97005 * 120.00655 * 0.02562 * 1 2 3 22 22 H 1.08001 * 126.08664 * 359.97379 * 10 9 7 23 23 H 1.09007 * 109.66084 * 222.66393 * 17 15 14 24 24 H 1.09004 * 109.55718 * 102.25388 * 17 15 14 25 25 H 1.09002 * 109.52360 * 291.07870 * 18 17 15 26 26 H 1.08995 * 109.52405 * 170.95110 * 18 17 15 27 27 H 1.08998 * 109.57873 * 49.73488 * 19 18 17 28 28 H 1.09000 * 109.57235 * 169.99408 * 19 18 17 29 29 H 1.09000 * 109.58211 * 43.95486 * 20 14 13 30 30 H 1.09001 * 109.69314 * 283.62127 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 3.7047 1.3466 0.0006 5 1 1.8860 2.3965 -1.2125 6 1 1.8859 2.3965 1.2125 7 6 2.0100 -1.2108 0.0005 8 1 3.0899 -1.2108 0.0010 9 6 1.3105 -2.4223 0.0005 10 6 -0.0738 -2.5915 -0.0005 11 7 -0.3231 -3.8916 -0.0006 12 6 0.8228 -4.5732 -0.0004 13 16 1.4423 -6.2228 -0.0008 14 6 3.0974 -5.6301 0.0011 15 6 3.1081 -4.3054 0.0013 16 7 1.8598 -3.7139 0.0006 17 6 4.3935 -3.4837 0.0022 18 6 5.5521 -4.3817 0.4385 19 6 5.5415 -5.6622 -0.4023 20 6 4.3318 -6.5094 0.0023 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8112 -1.8024 -0.0010 23 1 4.2955 -2.6502 0.6979 24 1 4.5842 -3.1034 -1.0014 25 1 5.4385 -4.6367 1.4922 26 1 6.4957 -3.8566 0.2905 27 1 5.4702 -5.4047 -1.4590 28 1 6.4587 -6.2236 -0.2242 29 1 4.2012 -7.3234 -0.7108 30 1 4.4896 -6.9196 0.9998 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036255556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:38 Heat of formation + Delta-G solvation = 61.372698 kcal Electronic energy + Delta-G solvation = -15778.806661 eV Core-core repulsion = 13279.563315 eV Total energy + Delta-G solvation = -2499.243345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74059 -37.70765 -34.11090 -33.26320 -30.71817 -29.23091 -27.96621 -25.03922 -23.37058 -22.51790 -20.30221 -19.75191 -18.41744 -17.59936 -16.13671 -15.36470 -14.86208 -14.43162 -14.15106 -13.67936 -13.32794 -13.26502 -12.70940 -12.55179 -12.15303 -12.06502 -11.45223 -11.40629 -11.16944 -10.82569 -10.75403 -10.44263 -10.25798 -10.01557 -9.96199 -9.63657 -8.88728 -8.47228 -7.32153 -6.88060 -6.78252 -4.33211 2.02276 2.25162 2.79371 2.86898 2.96677 3.01780 3.58103 3.71707 4.00382 4.44901 4.92786 4.98858 5.06321 5.17726 5.30764 5.46598 5.69038 5.78662 5.86860 6.01032 6.07074 6.11464 6.21180 6.40658 6.44508 6.69741 6.88222 7.35900 7.45819 7.69048 8.18928 8.55943 8.65681 8.74065 9.56474 10.06874 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.025034 B = 0.008890 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.188187 B = 3148.684310 C = 4218.010755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.068 3.932 3 Si 0.932 3.068 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.425 4.425 8 H 0.080 0.920 9 C 0.189 3.811 10 C -0.105 4.105 11 N -0.436 5.436 12 C 0.014 3.986 13 S 0.079 5.921 14 C -0.242 4.242 15 C 0.127 3.873 16 N -0.438 5.438 17 C -0.059 4.059 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.025 4.025 21 H 0.284 0.716 22 H 0.200 0.800 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.720 -4.626 0.026 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.150 4.150 3 Si 0.756 3.244 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.098 0.902 9 C 0.080 3.920 10 C -0.257 4.257 11 N -0.157 5.157 12 C -0.342 4.342 13 S 0.327 5.673 14 C -0.363 4.363 15 C 0.016 3.984 16 N -0.123 5.123 17 C -0.098 4.098 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.065 4.065 21 H 0.095 0.905 22 H 0.216 0.784 23 H 0.105 0.895 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.060 -6.081 0.027 10.912 hybrid contribution 1.503 2.505 -0.010 2.921 sum 10.563 -3.576 0.016 11.152 Atomic orbital electron populations 1.69646 1.07365 1.29178 1.35749 1.25751 0.95041 1.01162 0.93066 0.85865 0.80063 0.79716 0.78775 1.18547 1.19602 1.19607 1.18560 0.94504 0.88210 1.44641 0.90203 1.19392 0.92451 0.80448 0.99739 1.23517 0.93654 0.90545 1.18003 1.69762 1.23480 1.06167 1.16300 1.24489 0.87691 0.94016 1.28005 1.83418 0.95712 1.00187 1.87999 1.23399 0.98499 0.94828 1.19535 1.19734 0.86454 0.91674 1.00563 1.43565 1.03579 1.08094 1.57104 1.20732 0.88890 0.97196 1.03031 1.21544 0.97540 0.95916 1.00310 1.21601 0.97265 0.96272 1.00394 1.20023 0.89122 0.95692 1.01626 0.90483 0.78390 0.89484 0.90007 0.91444 0.91136 0.91492 0.91288 0.90933 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.96 10.33 55.55 0.57 -19.38 16 2 C 0.07 1.64 5.49 -17.28 -0.09 1.55 16 3 Si 0.93 17.96 29.56 -169.99 -5.03 12.94 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.42 -10.95 9.16 -38.37 -0.35 -11.30 16 8 H 0.08 1.91 5.97 -52.49 -0.31 1.59 16 9 C 0.19 5.25 6.94 -82.88 -0.58 4.67 16 10 C -0.10 -3.02 10.84 -16.86 -0.18 -3.21 16 11 N -0.44 -12.56 11.25 -12.55 -0.14 -12.70 16 12 C 0.01 0.37 8.91 -88.28 -0.79 -0.42 16 13 S 0.08 1.65 23.34 -107.50 -2.51 -0.86 16 14 C -0.24 -4.57 6.28 -35.80 -0.22 -4.79 16 15 C 0.13 2.69 6.76 -80.74 -0.55 2.15 16 16 N -0.44 -11.30 3.20 -55.73 -0.18 -11.47 16 17 C -0.06 -1.00 5.42 -26.99 -0.15 -1.14 16 18 C -0.12 -1.46 5.89 -26.66 -0.16 -1.62 16 19 C -0.12 -1.35 5.96 -26.57 -0.16 -1.51 16 20 C -0.03 -0.34 6.25 -27.39 -0.17 -0.51 16 21 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 22 H 0.20 5.75 5.73 -52.49 -0.30 5.45 16 23 H 0.09 1.57 6.93 -51.92 -0.36 1.21 16 24 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 260.76 15.07 3.93 3.93 Total: -1.00 -30.36 260.76 -9.81 -40.17 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.06 Total: 3.51 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.39 Total: -16.13 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.25 Total: -43.56 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.51 Total: -0.86 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.36 -9.81 -40.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036255556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.546 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds