Wall clock time and date at job start Mon Mar 30 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48493 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47339 * 299.99925 * 3 2 1 6 6 H 1.48504 * 109.46924 * 59.99767 * 3 2 1 7 7 C 1.39817 * 120.00521 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00407 * 180.02562 * 7 2 1 9 9 C 1.39897 * 119.99402 * 0.02562 * 7 2 1 10 10 C 1.39461 * 126.97015 * 0.02666 * 9 7 2 11 11 N 1.32371 * 107.82501 * 179.97438 * 10 9 7 12 12 C 1.33335 * 109.89114 * 359.97438 * 11 10 9 13 13 S 1.76204 * 141.33025 * 180.02562 * 12 11 10 14 14 C 1.75801 * 90.88096 * 180.02562 * 13 12 11 15 15 C 1.32479 * 110.16615 * 359.96687 * 14 13 12 16 16 N 1.34682 * 109.60481 * 0.02562 * 12 11 10 17 17 C 1.52560 * 123.05148 * 180.02562 * 15 14 13 18 18 C 1.52940 * 108.79751 * 342.49212 * 17 15 14 19 19 C 1.53192 * 109.20622 * 51.01562 * 18 17 15 20 20 C 1.51558 * 124.83316 * 179.97438 * 14 13 12 21 21 H 0.97005 * 120.00655 * 0.02562 * 1 2 3 22 22 H 1.08001 * 126.08664 * 359.97379 * 10 9 7 23 23 H 1.09007 * 109.66084 * 222.66393 * 17 15 14 24 24 H 1.09004 * 109.55718 * 102.25388 * 17 15 14 25 25 H 1.09002 * 109.52360 * 291.07870 * 18 17 15 26 26 H 1.08995 * 109.52405 * 170.95110 * 18 17 15 27 27 H 1.08998 * 109.57873 * 49.73488 * 19 18 17 28 28 H 1.09000 * 109.57235 * 169.99408 * 19 18 17 29 29 H 1.09000 * 109.58211 * 43.95486 * 20 14 13 30 30 H 1.09001 * 109.69314 * 283.62127 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 3.7047 1.3466 0.0006 5 1 1.8860 2.3965 -1.2125 6 1 1.8859 2.3965 1.2125 7 6 2.0100 -1.2108 0.0005 8 1 3.0899 -1.2108 0.0010 9 6 1.3105 -2.4223 0.0005 10 6 -0.0738 -2.5915 -0.0005 11 7 -0.3231 -3.8916 -0.0006 12 6 0.8228 -4.5732 -0.0004 13 16 1.4423 -6.2228 -0.0008 14 6 3.0974 -5.6301 0.0011 15 6 3.1081 -4.3054 0.0013 16 7 1.8598 -3.7139 0.0006 17 6 4.3935 -3.4837 0.0022 18 6 5.5521 -4.3817 0.4385 19 6 5.5415 -5.6622 -0.4023 20 6 4.3318 -6.5094 0.0023 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8112 -1.8024 -0.0010 23 1 4.2955 -2.6502 0.6979 24 1 4.5842 -3.1034 -1.0014 25 1 5.4385 -4.6367 1.4922 26 1 6.4957 -3.8566 0.2905 27 1 5.4702 -5.4047 -1.4590 28 1 6.4587 -6.2236 -0.2242 29 1 4.2012 -7.3234 -0.7108 30 1 4.4896 -6.9196 0.9998 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036255556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:38 Heat of formation + Delta-G solvation = 44.083578 kcal Electronic energy + Delta-G solvation = -15779.556373 eV Core-core repulsion = 13279.563315 eV Total energy + Delta-G solvation = -2499.993058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.61858 -39.09393 -35.92863 -34.94787 -32.08822 -31.00299 -29.56275 -26.98036 -24.77153 -23.98015 -21.87841 -21.62800 -20.12922 -19.14961 -18.00295 -16.97243 -16.55173 -15.90975 -15.64044 -15.08554 -14.83179 -14.71905 -14.33442 -14.00932 -13.72464 -13.43283 -13.04798 -13.02166 -12.90100 -12.31824 -11.92489 -11.77884 -11.69257 -11.55861 -11.46624 -11.30205 -10.66586 -10.55120 -9.21620 -8.72285 -8.61534 -6.31183 0.35087 0.46068 1.08541 1.31823 1.37453 1.55612 1.77845 2.07073 2.30899 2.40344 3.18645 3.65952 3.94202 3.99520 4.13572 4.24047 4.44241 4.56420 4.67501 4.75288 4.89646 4.96004 5.02330 5.14675 5.16665 5.26458 5.42765 5.45932 5.58642 5.81524 6.24742 6.49683 6.69877 6.79685 7.50907 8.25931 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.025034 B = 0.008890 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.188187 B = 3148.684310 C = 4218.010755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.024 3.976 3 Si 1.012 2.988 4 H -0.249 1.249 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.093 0.907 9 C 0.169 3.831 10 C -0.148 4.148 11 N -0.476 5.476 12 C -0.009 4.009 13 S 0.110 5.890 14 C -0.216 4.216 15 C 0.079 3.921 16 N -0.449 5.449 17 C -0.054 4.054 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.028 4.028 21 H 0.294 0.706 22 H 0.186 0.814 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.425 -5.265 0.039 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.191 4.191 3 Si 0.831 3.169 4 H -0.172 1.172 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.111 0.889 9 C 0.058 3.942 10 C -0.299 4.299 11 N -0.198 5.198 12 C -0.366 4.366 13 S 0.358 5.642 14 C -0.336 4.336 15 C -0.030 4.030 16 N -0.135 5.135 17 C -0.094 4.094 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.067 4.067 21 H 0.105 0.895 22 H 0.202 0.798 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.774 -6.753 0.040 14.449 hybrid contribution 0.330 2.550 -0.013 2.571 sum 13.104 -4.203 0.027 13.761 Atomic orbital electron populations 1.69728 1.09188 1.30804 1.35359 1.26942 0.95849 1.04767 0.91571 0.84699 0.78977 0.74162 0.79088 1.17230 1.18782 1.18790 1.18965 0.95273 0.88369 1.45567 0.88872 1.19721 0.92459 0.82049 0.99953 1.23428 0.94616 0.90769 1.21055 1.69652 1.25187 1.06489 1.18519 1.25525 0.87791 0.96971 1.26337 1.83204 0.97056 0.96624 1.87317 1.24302 0.99082 0.94741 1.15486 1.20551 0.86232 0.93048 1.03188 1.43815 1.05174 1.07348 1.57182 1.20838 0.88664 0.97227 1.02670 1.21579 0.96593 0.95940 1.00478 1.21638 0.97790 0.95594 0.99895 1.20388 0.87059 0.95556 1.03728 0.89518 0.79771 0.91335 0.90100 0.91242 0.88138 0.91748 0.87193 0.88812 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.17 10.33 21.82 0.23 -42.94 16 2 C 0.02 1.17 5.49 85.19 0.47 1.64 16 3 Si 1.01 36.41 29.56 68.60 2.03 38.44 16 4 H -0.25 -8.39 7.11 99.48 0.71 -7.69 16 5 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 6 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.45 -23.81 9.16 23.05 0.21 -23.60 16 8 H 0.09 4.52 5.97 -2.91 -0.02 4.50 16 9 C 0.17 9.84 6.94 38.47 0.27 10.11 16 10 C -0.15 -9.14 10.84 84.91 0.92 -8.22 16 11 N -0.48 -29.08 11.25 -193.63 -2.18 -31.26 16 12 C -0.01 -0.51 8.91 179.53 1.60 1.09 16 13 S 0.11 4.54 23.34 -56.49 -1.32 3.22 16 14 C -0.22 -7.71 6.28 24.83 0.16 -7.56 16 15 C 0.08 3.29 6.76 41.04 0.28 3.56 16 16 N -0.45 -23.91 3.20 -330.25 -1.06 -24.97 16 17 C -0.05 -1.77 5.42 30.43 0.16 -1.61 16 18 C -0.11 -2.31 5.89 30.64 0.18 -2.13 16 19 C -0.11 -1.99 5.96 30.70 0.18 -1.81 16 20 C -0.03 -0.62 6.25 30.16 0.19 -0.44 16 21 H 0.29 13.65 8.30 -92.70 -0.77 12.89 16 22 H 0.19 11.60 5.73 -2.91 -0.02 11.58 16 23 H 0.07 2.45 6.93 -2.38 -0.02 2.44 16 24 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 25 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 26 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 1.24 8.11 -2.39 -0.02 1.22 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.39 260.76 3.48 -67.91 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.16 Total: 18.55 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 4.62 Total: -28.95 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -3.01 Total: -99.17 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.32 Total: 3.22 kcal Total: -71.39 3.48 -67.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036255556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.994 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds