Wall clock time and date at job start Mon Mar 30 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48502 * 109.47385 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47463 * 300.00170 * 3 2 1 6 6 H 1.48504 * 109.47063 * 60.00324 * 3 2 1 7 7 C 1.40095 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00138 * 197.33653 * 7 2 1 9 9 C 1.40546 * 119.99987 * 17.33328 * 7 2 1 10 10 C 1.40941 * 120.64298 * 24.67181 * 9 7 2 11 11 C 1.36209 * 119.97367 * 180.29881 * 10 9 7 12 12 C 1.38966 * 121.41498 * 359.68866 * 11 10 9 13 13 C 1.37634 * 121.34931 * 0.02562 * 12 11 10 14 14 C 1.39962 * 119.88912 * 359.97438 * 13 12 11 15 15 C 1.43199 * 120.66788 * 179.97438 * 14 13 12 16 16 C 4.94721 * 122.20335 * 156.81417 * 2 1 3 17 17 C 6.00109 * 129.17652 * 147.61745 * 2 1 3 18 18 C 1.39942 * 120.17521 * 300.44086 * 17 16 15 19 19 C 1.37860 * 119.81379 * 179.81447 * 18 17 16 20 20 C 1.38435 * 120.17957 * 0.44433 * 19 18 17 21 21 C 1.38427 * 120.36416 * 359.78950 * 20 19 18 22 22 C 1.37858 * 120.18072 * 359.97438 * 21 20 19 23 23 H 0.97005 * 120.00084 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.01127 * 359.97438 * 10 9 7 25 25 H 1.07997 * 119.28979 * 179.71058 * 11 10 9 26 26 H 1.08000 * 119.32609 * 180.02562 * 12 11 10 27 27 H 1.08010 * 120.05605 * 180.02562 * 13 12 11 28 28 H 1.07994 * 120.09203 * 0.02634 * 18 17 16 29 29 H 1.07995 * 119.90790 * 180.20932 * 19 18 17 30 30 H 1.08002 * 119.81768 * 179.76099 * 20 19 18 31 31 H 1.07995 * 119.91386 * 179.97438 * 21 20 19 32 32 H 1.07997 * 120.09887 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3465 -0.0006 5 1 1.8828 2.3965 -1.2125 6 1 1.8829 2.3964 1.2126 7 6 2.0081 -1.2132 -0.0005 8 1 3.0513 -1.2346 0.2781 9 6 1.3533 -2.4026 -0.3637 10 6 0.2166 -2.3714 -1.1964 11 6 -0.4111 -3.5319 -1.5348 12 6 0.0479 -4.7626 -1.0812 13 6 1.1559 -4.8591 -0.2704 14 6 1.8435 -3.7014 0.1117 15 6 2.9978 -3.7824 0.9551 16 6 3.9441 -3.8480 1.6481 17 6 5.0986 -3.9286 2.4915 18 6 5.0102 -4.5369 3.7487 19 6 6.1272 -4.6138 4.5530 20 6 7.3317 -4.0832 4.1238 21 6 7.4263 -3.4756 2.8836 22 6 6.3199 -3.3947 2.0652 23 1 -0.4850 0.8401 0.0004 24 1 -0.1597 -1.4273 -1.5616 25 1 -1.2840 -3.4948 -2.1697 26 1 -0.4755 -5.6619 -1.3708 27 1 1.4947 -5.8266 0.0698 28 1 4.0704 -4.9479 4.0865 29 1 6.0615 -5.0859 5.5221 30 1 8.2022 -4.1433 4.7602 31 1 8.3694 -3.0637 2.5562 32 1 6.3951 -2.9200 1.0981 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038283985.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:37 Heat of formation + Delta-G solvation = 67.043771 kcal Electronic energy + Delta-G solvation = -15668.262502 eV Core-core repulsion = 13137.361465 eV Total energy + Delta-G solvation = -2530.901037 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92767 -39.26311 -35.79369 -34.93641 -32.31692 -31.86174 -31.60859 -29.94974 -27.37092 -24.42448 -23.35200 -22.84715 -22.68192 -19.47384 -19.04968 -17.67964 -17.06370 -16.51331 -15.94146 -15.89377 -15.46203 -14.87562 -14.51766 -14.33097 -14.16389 -14.09073 -13.70883 -13.27010 -12.98940 -12.80269 -12.35271 -12.26781 -12.21348 -12.00887 -11.65570 -11.57183 -11.20505 -11.13133 -9.89846 -9.54708 -9.49108 -8.98891 -8.79306 -6.48087 -0.03230 0.47775 0.51411 0.96244 1.30775 1.45162 1.47475 2.01148 2.11092 2.30741 2.62223 3.09981 3.39730 3.67518 4.07248 4.09652 4.26640 4.33749 4.48039 4.53449 4.61438 4.67825 4.86656 4.96407 5.12812 5.13806 5.20678 5.29416 5.49832 5.56520 5.56662 5.64560 5.90025 5.96626 6.07145 6.10299 6.18005 6.48872 6.67029 6.82416 6.88144 8.09585 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.016965 B = 0.006374 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.038984 B = 4391.578138 C = 5748.473141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.250 1.250 6 H -0.259 1.259 7 C -0.466 4.466 8 H 0.067 0.933 9 C 0.109 3.891 10 C -0.190 4.190 11 C -0.086 4.086 12 C -0.247 4.247 13 C -0.057 4.057 14 C -0.186 4.186 15 C -0.063 4.063 16 C -0.236 4.236 17 C 0.013 3.987 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.123 4.123 23 H 0.298 0.702 24 H 0.113 0.887 25 H 0.121 0.879 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 -2.757 5.357 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.174 1.174 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.085 0.915 9 C 0.106 3.894 10 C -0.209 4.209 11 C -0.105 4.105 12 C -0.266 4.266 13 C -0.075 4.075 14 C -0.187 4.187 15 C -0.063 4.063 16 C -0.236 4.236 17 C 0.013 3.987 18 C -0.139 4.139 19 C -0.132 4.132 20 C -0.133 4.133 21 C -0.133 4.133 22 C -0.141 4.141 23 H 0.110 0.890 24 H 0.131 0.869 25 H 0.139 0.861 26 H 0.145 0.855 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.174 0.826 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.315 -2.604 5.365 11.061 hybrid contribution -0.244 0.661 -0.248 0.747 sum 9.071 -1.943 5.118 10.595 Atomic orbital electron populations 1.69802 1.08961 1.31602 1.31784 1.26882 0.95637 1.04652 0.90859 0.85152 0.79201 0.75628 0.79849 1.18709 1.17419 1.18362 1.19743 0.97915 0.92481 1.39173 0.91456 1.18980 0.91327 0.90860 0.88266 1.21024 0.99552 0.97988 1.02361 1.20797 0.98577 0.92652 0.98457 1.20529 1.00981 0.97452 1.07648 1.20892 0.94777 0.95540 0.96341 1.17431 0.98556 0.94562 1.08189 1.19731 0.93529 0.97703 0.95312 1.19574 0.97633 1.03630 1.02798 1.16311 0.88857 1.00664 0.92915 1.21466 1.00158 0.99484 0.92744 1.21416 0.91921 0.99511 1.00314 1.21702 0.98621 0.96862 0.96120 1.21394 0.98237 0.99178 0.94442 1.21459 0.92172 0.99887 1.00620 0.89040 0.86906 0.86101 0.85489 0.86831 0.86137 0.82563 0.82070 0.82806 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.56 10.95 21.85 0.24 -40.32 16 2 C 0.04 1.93 5.16 85.30 0.44 2.37 16 3 Si 0.98 38.02 29.59 68.60 2.03 40.05 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.47 -26.12 8.57 23.28 0.20 -25.92 16 8 H 0.07 3.86 7.38 -2.91 -0.02 3.84 16 9 C 0.11 6.13 5.74 -19.83 -0.11 6.02 16 10 C -0.19 -9.99 8.65 22.46 0.19 -9.80 16 11 C -0.09 -3.96 9.91 21.97 0.22 -3.74 16 12 C -0.25 -10.81 9.97 22.30 0.22 -10.59 16 13 C -0.06 -2.72 9.78 22.54 0.22 -2.50 16 14 C -0.19 -10.03 5.97 -19.39 -0.12 -10.15 16 15 C -0.06 -3.29 12.25 30.01 0.37 -2.93 16 16 C -0.24 -11.24 13.25 30.01 0.40 -10.84 16 17 C 0.01 0.48 5.75 -21.21 -0.12 0.36 16 18 C -0.12 -3.78 9.77 22.59 0.22 -3.56 16 19 C -0.11 -2.59 10.03 22.23 0.22 -2.37 16 20 C -0.12 -2.31 10.04 22.36 0.22 -2.08 16 21 C -0.11 -2.70 10.03 22.22 0.22 -2.48 16 22 C -0.12 -4.01 9.77 22.59 0.22 -3.79 16 23 H 0.30 13.33 8.29 -92.70 -0.77 12.56 16 24 H 0.11 6.00 6.18 -2.91 -0.02 5.98 16 25 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 26 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 27 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -64.72 292.82 6.41 -58.31 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.12 Total: 23.96 kcal Atomic # 6 Polarization: -85.02 SS G_CDS: 3.02 Total: -82.00 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.24 Total: -40.32 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -64.72 6.41 -58.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038283985.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.351 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds