Wall clock time and date at job start Mon Mar 30 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.34940 * 126.04003 * 124.71583 * 12 11 10 14 14 C 1.35320 * 107.74879 * 179.84078 * 13 12 11 15 15 C 1.39863 * 107.91673 * 0.42445 * 14 13 12 16 16 C 1.50707 * 125.89550 * 179.71920 * 15 14 13 17 17 F 1.39908 * 109.46997 * 184.99906 * 16 15 14 18 18 F 1.39895 * 109.47098 * 304.99658 * 16 15 14 19 19 F 1.39895 * 109.47327 * 64.99975 * 16 15 14 20 20 N 1.30838 * 108.20413 * 359.73663 * 15 14 13 21 21 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 25 25 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 26 26 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 27 27 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 28 28 H 1.08005 * 126.12627 * 359.97438 * 13 12 11 29 29 H 1.08002 * 126.03873 * 180.16348 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4322 -6.1007 0.0049 13 6 2.4764 -7.1071 0.9028 14 6 3.4926 -7.9287 0.5517 15 6 4.0960 -7.4013 -0.5945 16 6 5.2743 -7.9928 -1.3247 17 9 5.6667 -7.1295 -2.3534 18 9 6.3367 -8.1671 -0.4314 19 9 4.9132 -9.2307 -1.8671 20 7 3.4612 -6.3055 -0.9232 21 1 -0.4851 0.8400 -0.0004 22 1 0.6240 -2.5576 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.8719 -3.6036 0.8927 25 1 2.8719 -3.6052 -0.8873 26 1 0.8539 -5.0438 0.8948 27 1 0.8532 -5.0459 -0.8851 28 1 1.8172 -7.2351 1.7487 29 1 3.7884 -8.8300 1.0681 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043298593.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:18 Heat of formation + Delta-G solvation = -106.402974 kcal Electronic energy + Delta-G solvation = -17380.983732 eV Core-core repulsion = 13889.855476 eV Total energy + Delta-G solvation = -3491.128256 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.21683 -48.73271 -48.72844 -42.41761 -36.79718 -34.86005 -32.82637 -31.25593 -29.28715 -27.26295 -24.94706 -22.57564 -22.40600 -21.55659 -19.60653 -19.34646 -19.01951 -18.54665 -17.29662 -16.53521 -16.44452 -15.73860 -15.58313 -15.48242 -15.14892 -14.88206 -14.86897 -14.72814 -14.62039 -14.33711 -13.83516 -13.44382 -13.20725 -12.81401 -12.74989 -12.49144 -12.03808 -11.65289 -11.57416 -11.32413 -10.73676 -10.58270 -9.79937 -8.24307 -6.34210 0.56402 0.98032 1.37902 1.38490 1.39138 1.49977 1.79339 2.38387 2.63091 2.91833 3.09749 3.32283 3.64374 3.93844 4.06698 4.31172 4.39763 4.57270 4.69009 4.78651 4.85227 5.07076 5.24800 5.46087 5.65411 5.79706 5.91418 6.21225 6.33274 6.80751 7.34928 8.86974 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.035819 B = 0.004268 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.527196 B = 6558.541087 C = 7024.616127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.029 3.971 10 C -0.105 4.105 11 C 0.133 3.867 12 N -0.349 5.349 13 C 0.074 3.926 14 C -0.242 4.242 15 C -0.045 4.045 16 C 0.561 3.439 17 F -0.179 7.179 18 F -0.165 7.165 19 F -0.165 7.165 20 N -0.285 5.285 21 H 0.265 0.735 22 H 0.001 0.999 23 H 0.011 0.989 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.135 0.865 27 H 0.090 0.910 28 H 0.231 0.769 29 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -18.202 2.522 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.008 4.008 10 C -0.144 4.144 11 C 0.014 3.986 12 N -0.132 5.132 13 C -0.072 4.072 14 C -0.271 4.271 15 C -0.210 4.210 16 C 0.505 3.495 17 F -0.160 7.160 18 F -0.146 7.146 19 F -0.147 7.147 20 N -0.110 5.110 21 H 0.074 0.926 22 H 0.019 0.981 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.153 0.847 27 H 0.108 0.892 28 H 0.248 0.752 29 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.434 -17.030 1.685 17.955 hybrid contribution 0.530 0.425 0.172 0.701 sum 5.963 -16.605 1.857 17.740 Atomic orbital electron populations 1.70045 1.07430 1.27880 1.51364 1.25853 0.95777 1.02962 0.94658 0.85537 0.78714 0.78930 0.78441 1.20019 1.20317 1.19186 1.21625 0.93299 0.92656 1.50976 0.93039 1.18921 0.94031 0.91808 0.96059 1.21660 0.98660 0.93156 1.00913 1.22188 0.88549 0.81966 1.05932 1.49169 1.23586 1.20843 1.19608 1.23522 0.99964 0.87455 0.96224 1.21566 1.00541 1.06030 0.98963 1.22260 0.99900 0.97991 1.00852 1.16837 0.80791 0.75626 0.76263 1.93216 1.91819 1.70230 1.60771 1.93225 1.58114 1.95306 1.67967 1.93225 1.91704 1.43380 1.86355 1.77345 1.01663 1.17007 1.14998 0.92597 0.98090 0.97055 0.92967 0.93729 0.84679 0.89201 0.75226 0.79588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.56 13.29 21.45 0.28 -54.27 15 2 C 0.01 0.34 5.46 84.65 0.46 0.80 15 3 Si 0.96 43.94 29.54 68.60 2.03 45.97 15 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 7 C -0.55 -30.72 9.11 25.60 0.23 -30.48 15 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 15 9 C 0.03 1.45 4.97 29.85 0.15 1.60 15 10 C -0.11 -4.14 5.34 30.60 0.16 -3.98 15 11 C 0.13 3.83 6.51 86.38 0.56 4.39 15 12 N -0.35 -9.81 3.68 -348.06 -1.28 -11.09 15 13 C 0.07 1.46 11.45 83.54 0.96 2.42 15 14 C -0.24 -5.06 10.73 21.99 0.24 -4.83 15 15 C -0.04 -1.25 6.51 43.10 0.28 -0.97 15 16 C 0.56 14.54 3.51 71.24 0.25 14.79 15 17 F -0.18 -5.30 17.14 44.97 0.77 -4.53 15 18 F -0.16 -3.97 17.30 44.97 0.78 -3.20 15 19 F -0.17 -3.93 17.30 44.97 0.78 -3.16 15 20 N -0.28 -9.51 12.19 -47.38 -0.58 -10.08 15 21 H 0.27 14.67 8.31 -92.71 -0.77 13.89 15 22 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 23 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.04 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.14 2.96 8.07 -2.39 -0.02 2.94 15 27 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 28 H 0.23 2.16 8.06 -2.91 -0.02 2.14 15 29 H 0.19 2.61 8.06 -2.91 -0.02 2.59 15 Total: -1.00 -66.80 276.28 7.24 -59.56 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: 1.16 Total: -2.93 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 3.29 Total: -16.26 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.57 Total: -75.45 kcal Atomic # 9 Polarization: -13.21 SS G_CDS: 2.33 Total: -10.88 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.80 7.24 -59.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043298593.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.840 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds