Wall clock time and date at job start Mon Mar 30 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47398 * 2 1 4 4 C 1.50702 * 109.47150 * 120.00151 * 2 1 3 5 5 H 1.07991 * 120.00419 * 119.99590 * 4 2 1 6 6 C 1.37878 * 119.99740 * 300.00045 * 4 2 1 7 7 N 1.31521 * 120.00259 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00047 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46928 * 89.99951 * 8 6 4 10 10 H 1.48502 * 109.47199 * 209.99626 * 8 6 4 11 11 H 1.48500 * 109.47038 * 330.00281 * 8 6 4 12 12 N 1.46500 * 109.47068 * 240.00037 * 2 1 3 13 13 C 1.37139 * 126.51887 * 306.00099 * 12 2 1 14 14 C 1.34782 * 107.06117 * 179.97438 * 13 12 2 15 15 N 1.33857 * 108.46467 * 359.77985 * 14 13 12 16 16 C 1.31696 * 109.25747 * 0.37170 * 15 14 13 17 17 C 1.47173 * 125.87017 * 179.89109 * 16 15 14 18 18 C 1.35095 * 125.28516 * 17.23114 * 17 16 15 19 19 C 1.37784 * 114.68217 * 179.97438 * 18 17 16 20 20 C 1.33735 * 115.09393 * 0.02562 * 19 18 17 21 21 S 1.75855 * 109.77771 * 359.97438 * 20 19 18 22 22 H 1.09004 * 109.47290 * 300.00287 * 1 2 3 23 23 H 1.09009 * 109.46946 * 59.99664 * 1 2 3 24 24 H 1.08997 * 109.47126 * 179.97438 * 1 2 3 25 25 H 0.96999 * 120.00276 * 180.02562 * 7 6 4 26 26 H 1.07997 * 126.46972 * 0.02562 * 13 12 2 27 27 H 1.08007 * 125.76504 * 180.02562 * 14 13 12 28 28 H 1.08002 * 122.65768 * 359.96567 * 18 17 16 29 29 H 1.07996 * 122.45622 * 180.02562 * 19 18 17 30 30 H 1.07993 * 125.11064 * 180.26483 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9492 5.1121 11 1 2.4858 -2.5662 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 1.6795 -1.9555 -1.6037 14 6 2.3515 -2.1958 -2.7471 15 7 3.0815 -1.1141 -3.0452 16 6 2.8974 -0.1969 -2.1182 17 6 3.5258 1.1335 -2.0846 18 6 4.1157 1.7446 -3.1351 19 6 4.6345 2.9908 -2.8587 20 6 4.4760 3.4040 -1.5967 21 16 3.6250 2.1749 -0.6706 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7094 1.1619 3.4844 26 1 1.0016 -2.6311 -1.1034 27 1 2.3054 -3.1057 -3.3271 28 1 4.1761 1.2922 -4.1139 29 1 5.1326 3.5901 -3.6065 30 1 4.8151 4.3521 -1.2063 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045048398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:48 Heat of formation + Delta-G solvation = 87.998806 kcal Electronic energy + Delta-G solvation = -15636.975911 eV Core-core repulsion = 13138.887160 eV Total energy + Delta-G solvation = -2498.088751 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11975 -37.17147 -34.99168 -32.13890 -30.71089 -28.83107 -27.24093 -25.52665 -23.86262 -22.29456 -20.71414 -19.80662 -18.22655 -17.24934 -16.54878 -15.63211 -14.99793 -14.60563 -14.32807 -13.60069 -13.09248 -12.73250 -12.65111 -12.47946 -12.22820 -11.87220 -11.72567 -11.27391 -11.16115 -11.02081 -10.68590 -10.43207 -10.08080 -9.60041 -9.31424 -8.94326 -8.74055 -8.58013 -7.98515 -7.22638 -6.37265 -4.47730 1.16404 2.00246 2.45532 2.78956 3.13469 3.20586 3.23430 3.30122 3.72452 3.97188 4.19927 4.94934 5.00358 5.41224 5.57512 5.82449 5.91507 5.98063 6.18930 6.33081 6.49109 6.50734 6.57442 6.68311 6.81635 6.89070 7.26000 7.37414 7.50436 7.60195 7.83417 8.02794 8.56962 8.73863 9.20504 10.67821 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.009563 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.103957 B = 2927.400171 C = 3768.051273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.247 3.753 3 H 0.066 0.934 4 C -0.536 4.536 5 H 0.066 0.934 6 C 0.072 3.928 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.416 5.416 13 C -0.022 4.022 14 C -0.054 4.054 15 N -0.483 5.483 16 C 0.239 3.761 17 C -0.104 4.104 18 C -0.119 4.119 19 C -0.137 4.137 20 C -0.251 4.251 21 S 0.189 5.811 22 H 0.104 0.896 23 H 0.019 0.981 24 H 0.040 0.960 25 H 0.269 0.731 26 H 0.168 0.832 27 H 0.163 0.837 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 2.347 -5.429 6.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.146 3.854 3 H 0.083 0.917 4 C -0.574 4.574 5 H 0.085 0.915 6 C -0.132 4.132 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.095 5.095 13 C -0.161 4.161 14 C -0.205 4.205 15 N -0.204 5.204 16 C -0.020 4.020 17 C -0.223 4.223 18 C -0.152 4.152 19 C -0.168 4.168 20 C -0.388 4.388 21 S 0.454 5.546 22 H 0.123 0.877 23 H 0.038 0.962 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.185 0.815 27 H 0.180 0.820 28 H 0.160 0.840 29 H 0.152 0.848 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.312 2.579 -4.272 5.500 hybrid contribution 0.180 -0.483 0.158 0.539 sum 2.492 2.095 -4.114 5.246 Atomic orbital electron populations 1.22120 0.96050 1.00762 1.01806 1.19640 0.92836 0.93188 0.79706 0.91695 1.21193 1.33223 1.13708 0.89289 0.91533 1.24867 0.94362 0.94856 0.99102 1.69843 1.35303 1.22193 1.24562 0.86369 0.78815 0.80104 0.81571 1.20174 1.20775 1.19616 1.46532 1.30694 1.12432 1.19820 1.22658 1.05854 0.88403 0.99160 1.22088 1.01568 0.98648 0.98198 1.70333 1.23885 1.00763 1.25384 1.19975 0.97852 0.93931 0.90202 1.21659 1.07140 0.95394 0.98154 1.20171 1.00722 0.94759 0.99519 1.19910 1.03755 0.96618 0.96537 1.26172 1.08284 1.05236 0.99069 1.85361 1.52191 1.07403 1.09625 0.87722 0.96228 0.94075 0.92103 0.81468 0.81962 0.83983 0.84793 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.16 0.33 -3.04 16 2 C 0.25 5.89 2.75 -69.08 -0.19 5.70 16 3 H 0.07 1.60 4.47 -35.09 -0.16 1.45 16 4 C -0.54 -13.73 8.63 -34.44 -0.30 -14.03 16 5 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -22.67 11.32 55.43 0.63 -22.04 16 8 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 12 N -0.42 -9.42 2.64 -108.53 -0.29 -9.71 16 13 C -0.02 -0.44 10.69 -16.40 -0.18 -0.62 16 14 C -0.05 -1.04 11.83 -17.89 -0.21 -1.25 16 15 N -0.48 -10.45 11.24 -11.33 -0.13 -10.58 16 16 C 0.24 5.34 7.74 -154.59 -1.20 4.14 16 17 C -0.10 -2.11 6.33 -37.07 -0.23 -2.34 16 18 C -0.12 -2.07 10.07 -40.87 -0.41 -2.48 16 19 C -0.14 -2.05 10.16 -41.33 -0.42 -2.47 16 20 C -0.25 -3.83 11.23 29.15 0.33 -3.50 16 21 S 0.19 3.61 20.00 -107.50 -2.15 1.46 16 22 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 23 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 24 H 0.04 0.88 7.80 -51.93 -0.41 0.48 16 25 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 26 H 0.17 3.00 8.00 -52.49 -0.42 2.58 16 27 H 0.16 2.52 8.06 -52.48 -0.42 2.10 16 28 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 272.57 15.07 4.11 4.11 Total: -1.00 -27.67 272.57 -8.38 -36.05 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.96 Total: 3.89 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.57 Total: -18.15 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.21 Total: -42.33 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.15 Total: 1.46 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.67 -8.38 -36.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045048398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.051 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds