Wall clock time and date at job start Mon Mar 30 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47398 * 2 1 4 4 C 1.50702 * 109.47150 * 120.00151 * 2 1 3 5 5 H 1.07991 * 120.00419 * 119.99590 * 4 2 1 6 6 C 1.37878 * 119.99740 * 300.00045 * 4 2 1 7 7 N 1.31521 * 120.00259 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00047 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46928 * 89.99951 * 8 6 4 10 10 H 1.48502 * 109.47199 * 209.99626 * 8 6 4 11 11 H 1.48500 * 109.47038 * 330.00281 * 8 6 4 12 12 N 1.46500 * 109.47068 * 240.00037 * 2 1 3 13 13 C 1.37139 * 126.51887 * 306.00099 * 12 2 1 14 14 C 1.34782 * 107.06117 * 179.97438 * 13 12 2 15 15 N 1.33857 * 108.46467 * 359.77985 * 14 13 12 16 16 C 1.31696 * 109.25747 * 0.37170 * 15 14 13 17 17 C 1.47173 * 125.87017 * 179.89109 * 16 15 14 18 18 C 1.35095 * 125.28516 * 17.23114 * 17 16 15 19 19 C 1.37784 * 114.68217 * 179.97438 * 18 17 16 20 20 C 1.33735 * 115.09393 * 0.02562 * 19 18 17 21 21 S 1.75855 * 109.77771 * 359.97438 * 20 19 18 22 22 H 1.09004 * 109.47290 * 300.00287 * 1 2 3 23 23 H 1.09009 * 109.46946 * 59.99664 * 1 2 3 24 24 H 1.08997 * 109.47126 * 179.97438 * 1 2 3 25 25 H 0.96999 * 120.00276 * 180.02562 * 7 6 4 26 26 H 1.07997 * 126.46972 * 0.02562 * 13 12 2 27 27 H 1.08007 * 125.76504 * 180.02562 * 14 13 12 28 28 H 1.08002 * 122.65768 * 359.96567 * 18 17 16 29 29 H 1.07996 * 122.45622 * 180.02562 * 19 18 17 30 30 H 1.07993 * 125.11064 * 180.26483 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9492 5.1121 11 1 2.4858 -2.5662 3.7120 12 7 2.0183 -0.6906 -1.1962 13 6 1.6795 -1.9555 -1.6037 14 6 2.3515 -2.1958 -2.7471 15 7 3.0815 -1.1141 -3.0452 16 6 2.8974 -0.1969 -2.1182 17 6 3.5258 1.1335 -2.0846 18 6 4.1157 1.7446 -3.1351 19 6 4.6345 2.9908 -2.8587 20 6 4.4760 3.4040 -1.5967 21 16 3.6250 2.1749 -0.6706 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7094 1.1619 3.4844 26 1 1.0016 -2.6311 -1.1034 27 1 2.3054 -3.1057 -3.3271 28 1 4.1761 1.2922 -4.1139 29 1 5.1326 3.5901 -3.6065 30 1 4.8151 4.3521 -1.2063 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045048398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:47 Heat of formation + Delta-G solvation = 74.030199 kcal Electronic energy + Delta-G solvation = -15637.581635 eV Core-core repulsion = 13138.887160 eV Total energy + Delta-G solvation = -2498.694475 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.71495 -38.48689 -36.79063 -33.97584 -32.13976 -30.59521 -28.68578 -27.45554 -25.24116 -24.01759 -22.20134 -21.42133 -19.56751 -18.93391 -18.36336 -17.22142 -16.45932 -16.23835 -15.98372 -15.20253 -14.75885 -14.37195 -14.10415 -13.88846 -13.67336 -13.46146 -13.15860 -12.99750 -12.94583 -12.82658 -12.42843 -12.23202 -11.70514 -11.26102 -10.94998 -10.63687 -10.40327 -10.25533 -9.42557 -8.72486 -8.29093 -6.45821 -0.21326 0.59723 1.13072 1.33109 1.37554 1.40902 1.49308 1.88848 2.09856 2.35421 2.43134 3.00648 3.52109 4.07254 4.26067 4.33098 4.52000 4.62197 4.70098 4.74232 4.74514 4.79928 5.12043 5.19194 5.35271 5.42671 5.57988 5.67951 5.69798 5.88266 6.00567 6.31318 6.63298 7.13820 7.25088 8.75123 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.009563 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.103957 B = 2927.400171 C = 3768.051273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.246 3.754 3 H 0.060 0.940 4 C -0.549 4.549 5 H 0.049 0.951 6 C 0.037 3.963 7 N -0.899 5.899 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.273 1.273 12 N -0.431 5.431 13 C -0.041 4.041 14 C -0.049 4.049 15 N -0.500 5.500 16 C 0.224 3.776 17 C -0.144 4.144 18 C -0.102 4.102 19 C -0.134 4.134 20 C -0.220 4.220 21 S 0.117 5.883 22 H 0.088 0.912 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.272 0.728 26 H 0.184 0.816 27 H 0.200 0.800 28 H 0.151 0.849 29 H 0.179 0.821 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 2.970 -6.210 7.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.145 3.855 3 H 0.077 0.923 4 C -0.587 4.587 5 H 0.067 0.933 6 C -0.165 4.165 7 N -0.536 5.536 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.198 1.198 12 N -0.110 5.110 13 C -0.178 4.178 14 C -0.200 4.200 15 N -0.221 5.221 16 C -0.035 4.035 17 C -0.262 4.262 18 C -0.136 4.136 19 C -0.164 4.164 20 C -0.356 4.356 21 S 0.381 5.619 22 H 0.106 0.894 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.201 0.799 27 H 0.217 0.783 28 H 0.169 0.831 29 H 0.196 0.804 30 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.204 3.186 -5.069 6.791 hybrid contribution -0.025 -0.606 0.289 0.672 sum 3.179 2.580 -4.780 6.294 Atomic orbital electron populations 1.21969 0.95616 1.00849 1.01246 1.19494 0.93121 0.93121 0.79778 0.92261 1.21249 1.33401 1.13442 0.90587 0.93294 1.25471 0.94459 0.95418 1.01161 1.69918 1.35702 1.22840 1.25182 0.85550 0.78383 0.78910 0.78867 1.20129 1.19853 1.19785 1.46527 1.31410 1.13277 1.19790 1.23097 1.06701 0.88165 0.99851 1.22695 1.00161 0.99162 0.97941 1.70356 1.24706 1.01418 1.25644 1.20489 0.97845 0.94938 0.90222 1.21783 1.09825 0.95548 0.99084 1.20536 0.98681 0.95363 0.99044 1.20296 1.03045 0.95754 0.97278 1.26496 1.06056 1.04867 0.98227 1.85512 1.54686 1.09981 1.11682 0.89367 0.95491 0.93607 0.91846 0.79907 0.78326 0.83106 0.80409 0.78745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.38 8.95 71.98 0.64 -5.73 16 2 C 0.25 12.00 2.75 44.25 0.12 12.12 16 3 H 0.06 3.02 4.47 -13.09 -0.06 2.96 16 4 C -0.55 -28.70 8.63 25.60 0.22 -28.48 16 5 H 0.05 2.67 7.81 -2.92 -0.02 2.65 16 6 C 0.04 1.91 5.30 84.65 0.45 2.36 16 7 N -0.90 -46.67 11.32 21.45 0.24 -46.43 16 8 Si 0.96 41.10 29.54 68.60 2.03 43.13 16 9 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.43 -19.79 2.64 -497.28 -1.32 -21.11 16 13 C -0.04 -1.65 10.69 83.07 0.89 -0.76 16 14 C -0.05 -1.85 11.83 83.59 0.99 -0.86 16 15 N -0.50 -21.43 11.24 -189.76 -2.13 -23.56 16 16 C 0.22 10.05 7.74 136.20 1.05 11.11 16 17 C -0.14 -5.81 6.33 23.89 0.15 -5.66 16 18 C -0.10 -3.38 10.07 21.44 0.22 -3.16 16 19 C -0.13 -3.52 10.16 21.14 0.21 -3.30 16 20 C -0.22 -6.08 11.23 66.80 0.75 -5.33 16 21 S 0.12 4.48 20.00 -56.49 -1.13 3.35 16 22 H 0.09 4.35 6.07 -2.39 -0.01 4.34 16 23 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.04 1.99 7.80 -2.39 -0.02 1.97 16 25 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 26 H 0.18 6.53 8.00 -2.91 -0.02 6.50 16 27 H 0.20 5.73 8.06 -2.91 -0.02 5.70 16 28 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 29 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 30 H 0.20 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -59.93 272.57 4.49 -55.44 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.10 Total: 16.88 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 5.70 Total: -27.70 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -3.21 Total: -91.10 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.13 Total: 3.35 kcal Total: -59.93 4.49 -55.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045048398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.468 kcal (2) G-P(sol) polarization free energy of solvation -59.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds