Wall clock time and date at job start Mon Mar 30 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47696 * 2 1 4 4 C 1.50700 * 109.47186 * 239.99888 * 2 1 3 5 5 H 1.08004 * 120.00313 * 240.00645 * 4 2 1 6 6 C 1.37875 * 119.99878 * 59.99992 * 4 2 1 7 7 N 1.31509 * 120.00217 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99818 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47036 * 60.00458 * 8 6 4 10 10 H 1.48507 * 109.47053 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47043 * 300.00130 * 8 6 4 12 12 N 1.46501 * 109.46975 * 120.00121 * 2 1 3 13 13 C 1.37138 * 126.52020 * 53.82712 * 12 2 1 14 14 C 1.34785 * 107.06520 * 180.09852 * 13 12 2 15 15 N 1.33858 * 108.45839 * 359.64520 * 14 13 12 16 16 C 1.31707 * 109.26077 * 0.22278 * 15 14 13 17 17 C 1.47178 * 125.86949 * 180.02562 * 16 15 14 18 18 C 1.35094 * 125.28042 * 342.01874 * 17 16 15 19 19 C 1.37790 * 114.67091 * 179.79559 * 18 17 16 20 20 C 1.33726 * 115.09596 * 0.50073 * 19 18 17 21 21 S 1.75855 * 109.78204 * 359.72950 * 20 19 18 22 22 H 1.09004 * 109.46587 * 59.99801 * 1 2 3 23 23 H 1.08993 * 109.47241 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46644 * 300.00427 * 1 2 3 25 25 H 0.96998 * 120.00213 * 179.97438 * 7 6 4 26 26 H 1.08000 * 126.46920 * 0.02562 * 13 12 2 27 27 H 1.07996 * 125.76630 * 179.90532 * 14 13 12 28 28 H 1.07989 * 122.66593 * 0.02562 * 18 17 16 29 29 H 1.08003 * 122.45125 * 180.20887 * 19 18 17 30 30 H 1.08001 * 125.10938 * 179.76684 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8257 -2.5204 -4.0077 10 1 1.8270 -0.4200 -5.2205 11 1 3.8064 -1.1211 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 1.6771 -1.9543 1.6054 14 6 2.3488 -2.1946 2.7490 15 7 3.0908 -1.1188 3.0388 16 6 2.9047 -0.2005 2.1131 17 6 3.5424 1.1253 2.0731 18 6 4.1340 1.7385 3.1214 19 6 4.6665 2.9773 2.8375 20 6 4.5078 3.3869 1.5744 21 16 3.6459 2.1605 0.6548 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 0.7096 1.1617 -3.4844 26 1 0.9973 -2.6290 1.1064 27 1 2.3001 -3.1032 3.3306 28 1 4.1887 1.2917 4.1030 29 1 5.1707 3.5758 3.5818 30 1 4.8570 4.3290 1.1784 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045048399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:50 Heat of formation + Delta-G solvation = 88.040012 kcal Electronic energy + Delta-G solvation = -15638.193332 eV Core-core repulsion = 13140.106368 eV Total energy + Delta-G solvation = -2498.086964 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.11801 -37.17063 -34.99043 -32.13864 -30.70901 -28.83025 -27.24078 -25.52397 -23.86119 -22.29327 -20.71101 -19.80434 -18.22763 -17.24859 -16.54572 -15.63114 -14.99664 -14.60821 -14.32371 -13.60246 -13.09253 -12.72944 -12.64815 -12.47858 -12.22443 -11.86613 -11.72589 -11.28383 -11.15032 -11.00823 -10.69240 -10.43170 -10.09020 -9.60604 -9.31116 -8.93950 -8.73856 -8.57919 -7.98198 -7.22777 -6.36927 -4.47550 1.16589 2.00459 2.45762 2.79067 3.15191 3.19934 3.22461 3.30058 3.72713 3.97089 4.20023 4.95141 5.00500 5.41268 5.57624 5.82528 5.91559 5.98145 6.18970 6.33250 6.49172 6.50855 6.57528 6.68374 6.81756 6.89252 7.26074 7.37511 7.50653 7.60168 7.83575 8.02869 8.56778 8.73948 9.20644 10.68112 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.009585 C = 0.007441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.171021 B = 2920.441513 C = 3762.220953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.247 3.753 3 H 0.066 0.934 4 C -0.537 4.537 5 H 0.066 0.934 6 C 0.073 3.927 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.416 5.416 13 C -0.022 4.022 14 C -0.054 4.054 15 N -0.483 5.483 16 C 0.240 3.760 17 C -0.104 4.104 18 C -0.119 4.119 19 C -0.137 4.137 20 C -0.251 4.251 21 S 0.189 5.811 22 H 0.104 0.896 23 H 0.040 0.960 24 H 0.019 0.981 25 H 0.270 0.730 26 H 0.168 0.832 27 H 0.163 0.837 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.459 2.348 5.400 6.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.147 3.853 3 H 0.083 0.917 4 C -0.575 4.575 5 H 0.084 0.916 6 C -0.131 4.131 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.095 5.095 13 C -0.161 4.161 14 C -0.205 4.205 15 N -0.204 5.204 16 C -0.020 4.020 17 C -0.224 4.224 18 C -0.152 4.152 19 C -0.168 4.168 20 C -0.388 4.388 21 S 0.455 5.545 22 H 0.123 0.877 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.185 0.815 27 H 0.180 0.820 28 H 0.160 0.840 29 H 0.152 0.848 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.338 2.579 4.237 5.484 hybrid contribution 0.178 -0.497 -0.153 0.550 sum 2.516 2.082 4.085 5.230 Atomic orbital electron populations 1.22119 0.96057 1.00764 1.01804 1.19633 0.92833 0.93199 0.79682 0.91687 1.21155 1.33314 1.13720 0.89305 0.91596 1.24859 0.94367 0.94835 0.99080 1.69828 1.35269 1.22135 1.24669 0.86428 0.79508 0.79728 0.81194 1.19904 1.20825 1.19837 1.46532 1.30501 1.12516 1.19922 1.22659 1.05924 0.88438 0.99079 1.22088 1.01379 0.98788 0.98248 1.70338 1.23762 1.00857 1.25411 1.19978 0.97513 0.94004 0.90460 1.21660 1.07078 0.95487 0.98129 1.20172 1.00665 0.94811 0.99518 1.19910 1.03681 0.96736 0.96500 1.26168 1.08187 1.05303 0.99104 1.85365 1.51753 1.07782 1.09622 0.87728 0.94077 0.96222 0.92043 0.81471 0.81964 0.83991 0.84794 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.94 37.16 0.33 -3.05 16 2 C 0.25 5.89 2.74 -69.08 -0.19 5.70 16 3 H 0.07 1.60 4.49 -35.43 -0.16 1.45 16 4 C -0.54 -13.75 8.63 -34.44 -0.30 -14.05 16 5 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -22.66 11.32 55.43 0.63 -22.04 16 8 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.42 -9.42 2.64 -108.53 -0.29 -9.71 16 13 C -0.02 -0.44 10.69 -16.40 -0.18 -0.62 16 14 C -0.05 -1.04 11.83 -17.89 -0.21 -1.25 16 15 N -0.48 -10.46 11.25 -11.33 -0.13 -10.59 16 16 C 0.24 5.34 7.74 -154.59 -1.20 4.15 16 17 C -0.10 -2.11 6.32 -37.07 -0.23 -2.35 16 18 C -0.12 -2.07 10.07 -40.86 -0.41 -2.48 16 19 C -0.14 -2.05 10.16 -41.33 -0.42 -2.47 16 20 C -0.25 -3.83 11.23 29.15 0.33 -3.50 16 21 S 0.19 3.62 20.01 -107.50 -2.15 1.47 16 22 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 23 H 0.04 0.88 7.80 -51.93 -0.41 0.48 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 26 H 0.17 3.00 7.99 -52.49 -0.42 2.58 16 27 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 28 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 30 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -27.65 272.59 -8.38 -36.03 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -2.96 Total: 3.91 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.57 Total: -18.16 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.21 Total: -42.33 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.15 Total: 1.47 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.65 -8.38 -36.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045048399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.071 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds