Wall clock time and date at job start Mon Mar 30 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 C 1.50695 * 109.47459 * 239.99802 * 2 1 3 5 5 H 1.08002 * 120.00310 * 275.08789 * 4 2 1 6 6 C 1.37876 * 119.99995 * 95.07877 * 4 2 1 7 7 N 1.31513 * 120.00441 * 184.91326 * 6 4 2 8 8 Si 1.86798 * 119.99984 * 4.91697 * 6 4 2 9 9 H 1.48504 * 109.47220 * 84.82422 * 8 6 4 10 10 H 1.48499 * 109.47309 * 204.82420 * 8 6 4 11 11 H 1.48500 * 109.47423 * 324.82337 * 8 6 4 12 12 C 1.50694 * 109.46805 * 119.99793 * 2 1 3 13 13 O 1.21298 * 120.00340 * 95.00559 * 12 2 1 14 14 C 1.46866 * 120.00051 * 274.99764 * 12 2 1 15 15 C 1.40005 * 120.11326 * 359.97438 * 14 12 2 16 16 C 1.37647 * 119.98301 * 179.77203 * 15 14 12 17 17 C 1.38954 * 120.25124 * 0.48133 * 16 15 14 18 18 C 1.39637 * 120.09315 * 359.52474 * 17 16 15 19 19 C 1.38009 * 120.01453 * 0.23146 * 18 17 16 20 20 O 1.36550 * 108.57802 * 180.23572 * 18 17 16 21 21 C 1.43972 * 105.43804 * 342.67840 * 20 18 17 22 22 O 1.36321 * 131.32599 * 179.82405 * 17 16 15 23 23 H 1.09008 * 109.47021 * 55.03271 * 1 2 3 24 24 H 1.08999 * 109.47169 * 175.03174 * 1 2 3 25 25 H 1.08996 * 109.47070 * 295.03648 * 1 2 3 26 26 H 0.96991 * 120.00678 * 180.02562 * 7 6 4 27 27 H 1.08000 * 120.00892 * 0.04208 * 15 14 12 28 28 H 1.07995 * 119.87776 * 180.33396 * 16 15 14 29 29 H 1.07996 * 120.06712 * 180.02562 * 19 18 17 30 30 H 1.09002 * 110.56827 * 268.63057 * 21 20 18 31 31 H 1.09003 * 110.56557 * 145.78191 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1343 -1.7856 -1.2294 6 6 2.3619 0.0122 -2.3574 7 7 2.7077 -0.6129 -3.4616 8 14 2.3172 1.8792 -2.3160 9 1 3.6029 2.3934 -1.7795 10 1 2.1112 2.4001 -3.6913 11 1 1.2021 2.3285 -1.4444 12 6 2.0323 -0.7103 1.2305 13 8 2.3208 -1.8872 1.1761 14 6 2.1725 0.0224 2.4955 15 6 1.8408 1.3810 2.5609 16 6 1.9689 2.0639 3.7491 17 6 2.4362 1.4126 4.8841 18 6 2.7691 0.0577 4.8266 19 6 2.6389 -0.6355 3.6404 20 8 3.1921 -0.3391 6.0628 21 6 3.5037 0.8759 6.7696 22 8 2.6513 1.8593 6.1539 23 1 -0.3633 0.5890 -0.8422 24 1 -0.3633 -1.0238 -0.0890 25 1 -0.3633 0.4349 0.9311 26 1 2.9399 -0.1045 -4.2544 27 1 1.4805 1.8920 1.6803 28 1 1.7074 3.1106 3.7989 29 1 2.8957 -1.6835 3.5951 30 1 4.5526 1.1396 6.6339 31 1 3.2675 0.7740 7.8289 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048259167.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:46 Heat of formation + Delta-G solvation = -72.751664 kcal Electronic energy + Delta-G solvation = -17534.023481 eV Core-core repulsion = 14553.918444 eV Total energy + Delta-G solvation = -2980.105036 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.23825 -39.18224 -36.96081 -36.40846 -33.78907 -31.54305 -30.68027 -29.92620 -26.16368 -25.31453 -24.29093 -22.94646 -21.88226 -19.41052 -18.02987 -17.45534 -17.17015 -17.09992 -16.18454 -14.95614 -14.89049 -14.54031 -14.05902 -13.91104 -13.76204 -13.27646 -13.11547 -12.85668 -12.79009 -12.43817 -12.26382 -11.52843 -11.17274 -11.09231 -10.89795 -10.75268 -10.32604 -9.85206 -9.18478 -8.91302 -8.77517 -8.53987 -8.12409 -6.11829 -4.12691 0.73922 1.22286 2.55576 2.94210 3.21856 3.26936 3.29213 3.31533 3.88547 4.34112 4.38275 4.48922 4.61877 4.78384 5.02259 5.05849 5.20949 5.22506 5.44555 5.85089 5.97772 6.04513 6.13821 6.26716 6.30145 6.38576 6.51878 6.53508 6.90147 7.02553 7.17130 7.56533 8.33774 8.52510 9.02489 9.47374 11.01215 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.005986 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.701391 B = 4676.591510 C = 5035.914204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.026 4.026 3 H 0.054 0.946 4 C -0.508 4.508 5 H 0.087 0.913 6 C 0.073 3.927 7 N -0.893 5.893 8 Si 0.868 3.132 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.262 1.262 12 C 0.404 3.596 13 O -0.445 6.445 14 C -0.144 4.144 15 C -0.062 4.062 16 C -0.113 4.113 17 C 0.048 3.952 18 C 0.014 3.986 19 C -0.050 4.050 20 O -0.309 6.309 21 C 0.213 3.787 22 O -0.309 6.309 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.265 0.735 27 H 0.151 0.849 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.083 0.917 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 7.465 17.372 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.045 4.045 3 H 0.072 0.928 4 C -0.546 4.546 5 H 0.105 0.895 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.695 3.305 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.280 3.720 13 O -0.318 6.318 14 C -0.145 4.145 15 C -0.080 4.080 16 C -0.132 4.132 17 C 0.003 3.997 18 C -0.030 4.030 19 C -0.069 4.069 20 O -0.225 6.225 21 C 0.101 3.899 22 O -0.225 6.225 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.169 0.831 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.101 0.899 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.478 6.828 17.361 18.662 hybrid contribution 0.246 1.163 0.220 1.209 sum -0.232 7.991 17.581 19.313 Atomic orbital electron populations 1.21902 0.96157 1.01673 0.99339 1.19569 0.94443 0.97209 0.93280 0.92824 1.20842 1.43620 0.96235 0.93884 0.89503 1.25039 0.94472 0.98120 0.95249 1.69883 1.45682 1.35822 1.01673 0.86994 0.79162 0.86638 0.77712 1.19906 1.21187 1.18651 1.23030 0.73324 0.88074 0.87584 1.90418 1.37511 1.17840 1.86044 1.20923 1.02508 0.95173 0.95941 1.21411 0.96077 0.93199 0.97310 1.20036 1.03703 1.00711 0.88727 1.20099 1.01797 0.92165 0.85614 1.19631 1.04206 0.92424 0.86760 1.20343 0.97945 1.01223 0.87405 1.87384 1.82607 1.30249 1.22296 1.25609 0.94844 0.72705 0.96772 1.87297 1.66590 1.46757 1.21902 0.92482 0.92743 0.95157 0.92456 0.83142 0.84282 0.83739 0.89911 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.16 37.16 0.34 -2.28 16 2 C -0.03 -0.57 1.59 -92.93 -0.15 -0.72 16 3 H 0.05 1.13 3.88 -51.93 -0.20 0.93 16 4 C -0.51 -14.12 8.55 -34.44 -0.29 -14.42 16 5 H 0.09 2.74 7.50 -52.49 -0.39 2.35 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 8 Si 0.87 20.10 26.99 -169.99 -4.59 15.51 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.26 -5.49 6.82 56.52 0.39 -5.11 16 12 C 0.40 8.62 6.21 -30.82 -0.19 8.43 16 13 O -0.44 -10.82 15.91 5.54 0.09 -10.73 16 14 C -0.14 -2.51 5.87 -105.07 -0.62 -3.13 16 15 C -0.06 -0.91 9.35 -39.14 -0.37 -1.27 16 16 C -0.11 -1.47 10.04 -39.53 -0.40 -1.86 16 17 C 0.05 0.67 7.16 -38.79 -0.28 0.39 16 18 C 0.01 0.20 7.13 -39.14 -0.28 -0.08 16 19 C -0.05 -0.83 9.60 -38.99 -0.37 -1.20 16 20 O -0.31 -4.17 11.41 -45.85 -0.52 -4.69 16 21 C 0.21 2.04 8.88 101.05 0.90 2.94 16 22 O -0.31 -3.84 11.39 -45.10 -0.51 -4.36 16 23 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.15 2.04 6.46 -52.49 -0.34 1.70 16 28 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.14 2.37 7.64 -52.49 -0.40 1.97 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 272.25 15.07 4.10 4.10 Total: -1.00 -32.16 272.25 -5.49 -37.65 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.02 Total: -0.13 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.80 Total: -11.23 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.12 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.95 Total: -19.78 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.59 Total: 15.51 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.16 -5.49 -37.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048259167.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.102 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds