Wall clock time and date at job start Mon Mar 30 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86798 * 119.99873 * 2 1 4 4 H 1.48498 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47402 * 300.00461 * 3 2 1 6 6 H 1.48503 * 109.47040 * 60.00275 * 3 2 1 7 7 C 1.39879 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00059 * 192.69501 * 7 2 1 9 9 C 1.41142 * 119.99904 * 12.69440 * 7 2 1 10 10 C 1.40882 * 120.15673 * 206.39889 * 9 7 2 11 11 C 1.36353 * 119.82691 * 180.02562 * 10 9 7 12 12 C 1.39521 * 120.16881 * 0.02987 * 11 10 9 13 13 N 1.39098 * 119.83837 * 179.97438 * 12 11 10 14 14 C 1.37768 * 119.99966 * 140.80810 * 13 12 11 15 15 N 1.28426 * 125.01309 * 174.04001 * 14 13 12 16 16 C 1.44597 * 119.85459 * 179.97438 * 15 14 13 17 17 C 1.53671 * 111.23214 * 0.02562 * 16 15 14 18 18 S 1.76756 * 125.01232 * 353.74315 * 14 13 12 19 19 C 1.39525 * 120.32395 * 0.22548 * 12 11 10 20 20 C 1.36348 * 120.16557 * 359.48899 * 19 12 11 21 21 H 0.96998 * 120.00410 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.08675 * 0.05165 * 10 9 7 23 23 H 1.08005 * 119.91523 * 179.97438 * 11 10 9 24 24 H 0.96998 * 120.00097 * 320.81156 * 13 12 11 25 25 H 1.09005 * 109.12978 * 120.47076 * 16 15 14 26 26 H 1.08995 * 109.13377 * 239.63523 * 16 15 14 27 27 H 1.09004 * 110.65579 * 118.44387 * 17 16 15 28 28 H 1.08995 * 110.65517 * 241.38481 * 17 16 15 29 29 H 1.08001 * 119.91386 * 179.74755 * 19 12 11 30 30 H 1.07996 * 120.08761 * 180.24920 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 -0.0006 5 1 1.8841 2.3965 -1.2124 6 1 1.8842 2.3964 1.2126 7 6 2.0084 -1.2114 -0.0005 8 1 3.0685 -1.2229 0.2050 9 6 1.3285 -2.4186 -0.2697 10 6 1.8179 -3.6360 0.2433 11 6 1.1561 -4.7984 -0.0213 12 6 -0.0026 -4.7843 -0.7984 13 7 -0.6720 -5.9742 -1.0646 14 6 -2.0494 -6.0041 -1.0669 15 7 -2.7639 -7.0163 -1.4048 16 6 -4.2064 -6.9245 -1.3651 17 6 -4.6629 -5.5351 -0.8934 18 16 -3.0937 -4.6573 -0.5983 19 6 -0.4902 -3.5831 -1.3143 20 6 0.1577 -2.4122 -1.0532 21 1 -0.4850 0.8400 0.0004 22 1 2.7147 -3.6485 0.8450 23 1 1.5302 -5.7326 0.3709 24 1 -0.1691 -6.7830 -1.2484 25 1 -4.6038 -7.1113 -2.3629 26 1 -4.5936 -7.6784 -0.6798 27 1 -5.2461 -5.0382 -1.6687 28 1 -5.2384 -5.6121 0.0290 29 1 -1.3854 -3.5804 -1.9184 30 1 -0.2231 -1.4826 -1.4498 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601776.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:16 Heat of formation + Delta-G solvation = 29.513093 kcal Electronic energy + Delta-G solvation = -15073.054693 eV Core-core repulsion = 12572.429811 eV Total energy + Delta-G solvation = -2500.624881 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.18798 -38.65778 -36.62277 -34.85852 -31.52162 -31.48722 -30.05431 -26.77077 -25.23010 -23.43983 -22.56106 -21.41734 -19.26947 -19.02627 -17.77234 -17.00338 -16.63800 -16.59224 -15.77740 -15.33581 -14.76174 -14.52641 -14.18708 -14.02154 -13.66377 -13.56243 -13.24375 -12.86979 -12.72931 -12.50065 -12.33875 -11.77965 -11.64526 -11.38875 -11.12715 -10.24262 -10.11209 -9.47698 -8.90357 -8.64740 -8.55517 -6.26347 0.34301 0.69159 1.02297 1.24350 1.31647 1.42201 1.56341 1.57093 2.21801 2.25146 2.76078 3.57505 3.72402 3.96167 4.16147 4.39959 4.43098 4.56048 4.69711 4.79607 4.99774 5.10747 5.16192 5.33828 5.49072 5.66777 5.87195 6.08468 6.15714 6.33400 6.52824 6.67351 6.92296 6.95084 7.10360 8.36494 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.038921 B = 0.005799 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.237391 B = 4827.285309 C = 5418.610496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.489 4.489 8 H 0.080 0.920 9 C 0.073 3.927 10 C -0.218 4.218 11 C -0.097 4.097 12 C 0.012 3.988 13 N -0.615 5.615 14 C 0.430 3.570 15 N -0.638 5.638 16 C 0.066 3.934 17 C -0.115 4.115 18 S -0.226 6.226 19 C -0.111 4.111 20 C -0.162 4.162 21 H 0.287 0.713 22 H 0.110 0.890 23 H 0.126 0.874 24 H 0.418 0.582 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 -6.527 -1.611 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.519 4.519 8 H 0.098 0.902 9 C 0.071 3.929 10 C -0.238 4.238 11 C -0.117 4.117 12 C -0.082 4.082 13 N -0.248 5.248 14 C 0.043 3.957 15 N -0.371 5.371 16 C -0.066 4.066 17 C -0.265 4.265 18 S -0.002 6.002 19 C -0.132 4.132 20 C -0.182 4.182 21 H 0.098 0.902 22 H 0.128 0.872 23 H 0.144 0.856 24 H 0.258 0.742 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.035 -5.997 -1.470 8.634 hybrid contribution -0.091 0.028 -0.150 0.178 sum -6.126 -5.969 -1.620 8.705 Atomic orbital electron populations 1.69900 1.08901 1.30374 1.36097 1.26772 0.95548 1.04558 0.91398 0.85124 0.79410 0.76201 0.78774 1.17992 1.19093 1.19276 1.19854 0.96802 0.91748 1.43462 0.90204 1.18039 0.92165 0.93360 0.89371 1.20831 1.03551 0.92629 1.06760 1.20371 0.95699 0.98180 0.97498 1.17176 0.98428 0.84628 1.07949 1.40649 0.99646 1.11123 1.73384 1.23758 0.89478 0.90344 0.92074 1.70001 1.07131 1.27599 1.32355 1.22522 0.84831 0.95347 1.03934 1.25086 0.95969 0.97917 1.07508 1.87672 1.03609 1.24031 1.84882 1.20549 0.99650 0.92430 1.00591 1.20921 0.98941 0.96487 1.01858 0.90215 0.87228 0.85583 0.74219 0.87852 0.87829 0.85742 0.85818 0.87616 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.99 10.78 21.82 0.24 -42.75 16 2 C 0.03 1.57 5.23 85.23 0.45 2.01 16 3 Si 0.98 37.62 29.58 68.60 2.03 39.65 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 7 C -0.49 -25.71 9.05 23.38 0.21 -25.50 16 8 H 0.08 4.01 7.88 -2.91 -0.02 3.99 16 9 C 0.07 3.88 5.57 -21.27 -0.12 3.76 16 10 C -0.22 -10.22 9.74 22.48 0.22 -10.00 16 11 C -0.10 -4.06 9.90 22.14 0.22 -3.84 16 12 C 0.01 0.52 6.16 38.61 0.24 0.76 16 13 N -0.61 -22.45 5.41 -187.39 -1.01 -23.47 16 14 C 0.43 15.51 8.07 179.96 1.45 16.96 16 15 N -0.64 -20.68 10.87 -350.42 -3.81 -24.49 16 16 C 0.07 1.57 7.54 86.96 0.66 2.22 16 17 C -0.11 -2.63 7.48 72.21 0.54 -2.09 16 18 S -0.23 -8.05 19.75 -56.49 -1.12 -9.16 16 19 C -0.11 -5.20 8.08 22.14 0.18 -5.02 16 20 C -0.16 -8.48 8.62 22.48 0.19 -8.29 16 21 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 22 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 23 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 24 H 0.42 13.15 8.94 -92.71 -0.83 12.32 16 25 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.11 4.84 6.22 -2.91 -0.02 4.82 16 30 H 0.11 5.92 6.10 -2.91 -0.02 5.90 16 Total: -1.00 -59.67 269.25 0.90 -58.77 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.34 Total: 30.49 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.23 Total: -29.03 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -4.59 Total: -90.71 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.12 Total: -9.16 kcal Total: -59.67 0.90 -58.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601776.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.280 kcal (2) G-P(sol) polarization free energy of solvation -59.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds