Wall clock time and date at job start Mon Mar 30 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99971 * 2 1 4 4 H 1.48492 * 109.47623 * 240.00161 * 3 2 1 5 5 H 1.48503 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47045 * 119.99825 * 3 2 1 7 7 C 1.37881 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99475 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46947 * 180.02562 * 9 7 2 11 11 N 1.30366 * 126.18077 * 89.97683 * 10 9 7 12 12 N 1.28665 * 109.52924 * 180.02562 * 11 10 9 13 13 C 1.31264 * 109.24927 * 359.97438 * 12 11 10 14 14 C 1.47792 * 126.38245 * 179.74251 * 13 12 11 15 15 C 1.39575 * 120.15749 * 0.02562 * 14 13 12 16 16 C 1.37928 * 119.87988 * 180.02562 * 15 14 13 17 17 C 1.38401 * 120.20188 * 0.02745 * 16 15 14 18 18 C 1.38272 * 120.32086 * 359.97438 * 17 16 15 19 19 C 1.38258 * 120.11141 * 359.68687 * 18 17 16 20 20 F 1.35094 * 120.09915 * 180.29942 * 19 18 17 21 21 O 1.34439 * 126.18448 * 270.01653 * 10 9 7 22 22 H 0.97003 * 120.00577 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47868 * 60.00223 * 9 7 2 24 24 H 1.09004 * 109.47420 * 300.00014 * 9 7 2 25 25 H 1.07999 * 120.06169 * 359.97438 * 15 14 13 26 26 H 1.08004 * 119.90262 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.84214 * 179.97438 * 17 16 15 28 28 H 1.07993 * 119.94243 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 7 2.7308 -4.2292 1.0517 12 7 3.5322 -5.1659 0.6830 13 6 3.5703 -5.2116 -0.6283 14 6 4.3727 -6.1417 -1.4501 15 6 5.1922 -7.0907 -0.8370 16 6 5.9389 -7.9555 -1.6095 17 6 5.8785 -7.8846 -2.9904 18 6 5.0695 -6.9477 -3.6065 19 6 4.3100 -6.0790 -2.8449 20 9 3.5151 -5.1677 -3.4471 21 8 2.7464 -4.2476 -1.0856 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 5.2421 -7.1472 0.2404 26 1 6.5735 -8.6897 -1.1355 27 1 6.4660 -8.5644 -3.5897 28 1 5.0266 -6.8980 -4.6844 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057498084.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:04 Heat of formation + Delta-G solvation = 10.104245 kcal Electronic energy + Delta-G solvation = -16830.874950 eV Core-core repulsion = 13763.195262 eV Total energy + Delta-G solvation = -3067.679688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.93825 -43.42698 -39.06882 -35.46386 -33.86482 -32.63640 -30.87098 -30.46343 -27.73233 -24.43443 -23.97794 -22.67803 -21.61201 -21.19466 -18.03890 -17.09190 -16.95752 -16.33649 -16.16960 -15.69135 -15.54789 -14.78791 -14.68737 -14.07526 -13.40948 -13.18130 -12.69215 -12.40361 -12.19327 -11.88235 -11.76323 -11.46003 -11.29086 -11.04463 -10.85316 -10.42745 -10.23808 -10.05257 -9.59845 -9.06811 -8.63065 -8.23328 -6.26360 -4.32809 0.47773 0.95394 2.06921 2.79942 3.00665 3.25496 3.28804 3.33411 3.48403 3.94676 4.20868 4.31181 4.50239 4.70665 4.91646 5.03575 5.08730 5.29673 5.42807 5.67020 5.79384 5.87114 6.00454 6.09218 6.15372 6.42973 6.57291 7.08148 7.15316 7.66285 7.88979 8.66926 8.94370 9.32040 10.83801 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.036313 B = 0.005221 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.882921 B = 5362.141309 C = 5645.319573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.103 3.897 10 C 0.235 3.765 11 N -0.315 5.315 12 N -0.266 5.266 13 C 0.148 3.852 14 C -0.035 4.035 15 C -0.049 4.049 16 C -0.132 4.132 17 C -0.079 4.079 18 C -0.156 4.156 19 C 0.126 3.874 20 F -0.121 7.121 21 O -0.214 6.214 22 H 0.269 0.731 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.148 0.852 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.019 -14.769 -6.837 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.064 3.936 10 C 0.028 3.972 11 N -0.161 5.161 12 N -0.116 5.116 13 C -0.060 4.060 14 C -0.037 4.037 15 C -0.069 4.069 16 C -0.150 4.150 17 C -0.098 4.098 18 C -0.175 4.175 19 C 0.104 3.896 20 F -0.099 7.099 21 O -0.093 6.093 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.014 -14.851 -5.594 18.765 hybrid contribution 0.017 1.408 -1.322 1.932 sum 10.032 -13.442 -6.916 18.143 Atomic orbital electron populations 1.69912 1.06044 1.27805 1.48741 1.24934 0.95027 0.99474 0.94236 0.86384 0.79452 0.81709 0.79003 1.19933 1.20834 1.19803 1.20766 0.93242 0.88832 1.53700 0.92101 1.18263 0.89718 0.84320 1.01251 1.29686 0.95109 0.94766 0.77682 1.74431 1.10096 1.06042 1.25561 1.74529 1.14598 1.14520 1.07918 1.24835 0.96969 0.93259 0.90937 1.17336 0.99840 0.97054 0.89494 1.21130 0.92573 0.91686 1.01483 1.21144 1.00293 0.99894 0.93667 1.21179 0.96863 0.96864 0.94873 1.21096 0.98648 0.96837 1.00888 1.17811 0.92431 0.89767 0.89543 1.91602 1.71022 1.64130 1.83162 1.84972 1.47030 1.38550 1.38763 0.92139 0.92607 0.90866 0.83428 0.84398 0.84522 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.48 15 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 15 3 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.53 -14.75 9.09 -34.44 -0.31 -15.06 15 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 15 9 C 0.10 2.66 5.60 -29.04 -0.16 2.49 15 10 C 0.23 5.72 7.66 -12.90 -0.10 5.62 15 11 N -0.31 -7.61 12.22 32.58 0.40 -7.21 15 12 N -0.27 -5.79 11.92 32.06 0.38 -5.41 15 13 C 0.15 3.01 7.97 -13.89 -0.11 2.89 15 14 C -0.03 -0.54 5.88 -104.92 -0.62 -1.16 15 15 C -0.05 -0.59 9.70 -39.20 -0.38 -0.97 15 16 C -0.13 -1.13 10.03 -39.63 -0.40 -1.52 15 17 C -0.08 -0.63 10.04 -39.51 -0.40 -1.02 15 18 C -0.16 -1.58 10.01 -39.56 -0.40 -1.98 15 19 C 0.13 1.80 7.28 -39.01 -0.28 1.52 15 20 F -0.12 -2.05 15.91 2.25 0.04 -2.01 15 21 O -0.21 -4.89 9.70 3.95 0.04 -4.86 15 22 H 0.27 7.18 8.31 -40.82 -0.34 6.85 15 23 H 0.06 1.45 8.14 -51.93 -0.42 1.02 15 24 H 0.07 1.93 8.14 -51.93 -0.42 1.50 15 25 H 0.15 1.69 7.87 -52.49 -0.41 1.28 15 26 H 0.14 0.75 8.06 -52.48 -0.42 0.33 15 27 H 0.14 0.63 8.06 -52.49 -0.42 0.21 15 28 H 0.14 1.11 8.06 -52.49 -0.42 0.69 15 LS Contribution 266.97 15.07 4.02 4.02 Total: -1.00 -31.16 266.97 -4.73 -35.89 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: -2.07 Total: -4.74 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.25 Total: -7.43 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 1.52 Total: -37.11 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: 0.04 Total: -4.86 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.16 -4.73 -35.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057498084.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.995 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds