Wall clock time and date at job start Mon Mar 30 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76191 * 103.00169 * 2 1 4 4 C 1.38573 * 120.20150 * 359.97438 * 3 2 1 5 5 C 1.39114 * 120.19640 * 180.02562 * 4 3 2 6 6 N 1.39671 * 119.71777 * 179.97438 * 5 4 3 7 7 C 1.38773 * 120.55998 * 0.03070 * 5 4 3 8 8 C 1.38920 * 120.03556 * 359.95123 * 7 5 4 9 9 C 1.40236 * 120.20274 * 180.02562 * 3 2 1 10 10 C 1.46558 * 133.83959 * 359.94647 * 9 3 2 11 11 C 1.34376 * 107.06579 * 180.02562 * 10 9 3 12 12 N 1.37068 * 109.88607 * 359.97438 * 11 10 9 13 13 C 1.37205 * 125.10917 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99640 * 159.01244 * 13 12 11 15 15 C 1.38740 * 120.00179 * 339.01207 * 13 12 11 16 16 N 1.31511 * 119.99713 * 349.12509 * 15 13 12 17 17 Si 1.86797 * 119.99898 * 169.12304 * 15 13 12 18 18 H 1.48505 * 109.47162 * 90.00428 * 17 15 13 19 19 H 1.48501 * 109.47060 * 209.99922 * 17 15 13 20 20 H 1.48493 * 109.47291 * 329.99997 * 17 15 13 21 21 H 1.09003 * 109.46986 * 60.00098 * 1 2 3 22 22 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46688 * 300.00330 * 1 2 3 24 24 H 1.07998 * 119.90438 * 359.75084 * 4 3 2 25 25 H 0.96996 * 120.00283 * 0.02562 * 6 5 4 26 26 H 0.97000 * 119.99507 * 180.02562 * 6 5 4 27 27 H 1.08010 * 119.98044 * 179.97438 * 7 5 4 28 28 H 1.08003 * 126.47265 * 0.05337 * 10 9 3 29 29 H 1.08002 * 125.06253 * 179.97438 * 11 10 9 30 30 H 0.97010 * 119.99683 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 6 1.2003 2.6654 -0.0005 5 6 1.5134 4.0208 -0.0011 6 7 0.4874 4.9685 -0.0022 7 6 2.8366 4.4394 -0.0017 8 6 3.8622 3.5024 -0.0008 9 6 3.5501 2.1315 -0.0005 10 6 4.8324 1.4218 -0.0002 11 6 5.7995 2.3549 -0.0005 12 7 5.2400 3.6062 -0.0016 13 6 5.9426 4.7847 -0.0017 14 1 5.4692 5.6955 -0.3376 15 6 7.2611 4.8064 0.4297 16 7 7.7720 3.7569 1.0355 17 14 8.3104 6.3262 0.1498 18 1 8.1758 7.2414 1.3115 19 1 9.7321 5.9250 -0.0021 20 1 7.8577 7.0203 -1.0823 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.1670 2.3516 -0.0050 25 1 -0.4388 4.6805 -0.0021 26 1 0.7011 5.9146 -0.0029 27 1 3.0690 5.4942 -0.0026 28 1 4.9736 0.3511 -0.0002 29 1 6.8598 2.1495 0.0000 30 1 8.6938 3.7722 1.3374 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063022856.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:12 Heat of formation + Delta-G solvation = 56.737313 kcal Electronic energy + Delta-G solvation = -15334.235536 eV Core-core repulsion = 12834.791185 eV Total energy + Delta-G solvation = -2499.444351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.91562 -36.85616 -33.71028 -32.28738 -30.41622 -29.50673 -28.06877 -26.32583 -24.77879 -21.93112 -20.38245 -19.77267 -18.04030 -16.42508 -15.93725 -15.16966 -15.13196 -14.97921 -14.07226 -13.64887 -13.49111 -13.24538 -13.19255 -12.63271 -12.13760 -11.87319 -11.70226 -11.56444 -11.20423 -10.72187 -10.64111 -10.56858 -10.31044 -10.04181 -9.56854 -9.10609 -8.15777 -7.49334 -6.89865 -6.70198 -5.99496 -4.23121 2.04686 2.08754 2.73992 3.01170 3.04703 3.06199 3.10981 3.84905 4.13156 4.44241 4.75312 5.00089 5.08915 5.27607 5.28921 5.71531 5.87487 6.09650 6.32476 6.41216 6.66490 6.85314 6.93324 7.08555 7.14352 7.20743 7.45488 7.58400 7.78236 8.15611 8.26219 8.35800 8.53166 9.06981 9.50850 10.35288 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.031120 B = 0.006857 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.535024 B = 4082.665745 C = 4926.734869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.126 6.126 3 C -0.006 4.006 4 C -0.238 4.238 5 C 0.209 3.791 6 N -0.889 5.889 7 C -0.194 4.194 8 C 0.109 3.891 9 C -0.132 4.132 10 C -0.267 4.267 11 C 0.082 3.918 12 N -0.295 5.295 13 C -0.337 4.337 14 H 0.103 0.897 15 C 0.041 3.959 16 N -0.855 5.855 17 Si 0.938 3.062 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.265 1.265 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.388 0.612 26 H 0.391 0.609 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.171 0.829 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 -1.232 -1.725 9.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.115 5.885 3 C -0.119 4.119 4 C -0.267 4.267 5 C 0.104 3.896 6 N -0.430 5.430 7 C -0.222 4.222 8 C -0.007 4.007 9 C -0.142 4.142 10 C -0.291 4.291 11 C -0.051 4.051 12 N 0.041 4.959 13 C -0.465 4.465 14 H 0.121 0.879 15 C -0.166 4.166 16 N -0.488 5.488 17 Si 0.763 3.237 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.190 1.190 21 H 0.096 0.904 22 H 0.116 0.884 23 H 0.096 0.904 24 H 0.125 0.875 25 H 0.215 0.785 26 H 0.218 0.782 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.188 0.812 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.439 -2.137 -1.625 8.856 hybrid contribution -0.550 2.125 0.062 2.196 sum -8.989 -0.012 -1.563 9.124 Atomic orbital electron populations 1.23570 0.96882 1.05824 1.05084 1.85276 1.03965 1.06121 1.93143 1.20524 0.94390 0.93800 1.03203 1.19950 0.96700 0.91191 1.18881 1.16855 0.87395 0.88071 0.97247 1.42160 1.05965 1.06810 1.88099 1.19093 0.89206 0.97460 1.16447 1.17833 0.84496 0.93207 1.05167 1.18322 0.90863 0.92793 1.12247 1.21186 0.90018 0.97291 1.20613 1.22093 0.99075 0.82359 1.01537 1.40179 1.01634 1.05554 1.48518 1.19752 0.94992 0.87285 1.44461 0.87881 1.25457 0.97757 0.99318 0.94114 1.69936 1.15871 1.29758 1.33219 0.85748 0.78683 0.80014 0.79264 1.19811 1.20157 1.18971 0.90373 0.88405 0.90359 0.87546 0.78545 0.78229 0.87562 0.85858 0.81222 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.15 101.05 0.92 -0.88 16 2 S -0.13 -2.22 22.46 -107.50 -2.41 -4.63 16 3 C -0.01 -0.12 6.14 -38.71 -0.24 -0.36 16 4 C -0.24 -4.54 9.19 -39.13 -0.36 -4.90 16 5 C 0.21 4.01 6.74 -83.76 -0.56 3.44 16 6 N -0.89 -12.72 9.08 32.42 0.29 -12.42 16 7 C -0.19 -4.33 9.77 -39.13 -0.38 -4.71 16 8 C 0.11 2.77 6.75 -83.86 -0.57 2.20 16 9 C -0.13 -3.21 6.19 -104.90 -0.65 -3.86 16 10 C -0.27 -6.52 10.93 -37.59 -0.41 -6.93 16 11 C 0.08 2.14 9.90 -16.57 -0.16 1.98 16 12 N -0.29 -7.93 2.92 -59.75 -0.17 -8.11 16 13 C -0.34 -8.95 9.92 -14.96 -0.15 -9.10 16 14 H 0.10 2.61 7.85 -52.48 -0.41 2.19 16 15 C 0.04 1.04 5.35 -17.50 -0.09 0.95 16 16 N -0.86 -22.42 10.85 55.48 0.60 -21.82 16 17 Si 0.94 19.22 29.56 -169.99 -5.03 14.20 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H 0.08 0.92 7.75 -51.92 -0.40 0.52 16 22 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 23 H 0.08 0.93 7.76 -51.92 -0.40 0.53 16 24 H 0.11 1.70 5.88 -52.49 -0.31 1.39 16 25 H 0.39 4.52 8.83 -40.82 -0.36 4.16 16 26 H 0.39 4.94 8.83 -40.82 -0.36 4.58 16 27 H 0.11 2.25 8.06 -52.48 -0.42 1.83 16 28 H 0.12 2.75 8.06 -52.48 -0.42 2.32 16 29 H 0.17 4.43 6.34 -52.49 -0.33 4.10 16 30 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -29.24 272.04 -8.25 -37.50 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -2.98 Total: 13.36 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -2.65 Total: -22.17 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.72 Total: -42.35 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.41 Total: -4.63 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.24 -8.25 -37.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063022856.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.234 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds