Wall clock time and date at job start Mon Mar 30 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.76191 * 103.00169 * 2 1 4 4 C 1.38573 * 120.20150 * 359.97438 * 3 2 1 5 5 C 1.39114 * 120.19640 * 180.02562 * 4 3 2 6 6 N 1.39671 * 119.71777 * 179.97438 * 5 4 3 7 7 C 1.38773 * 120.55998 * 0.03070 * 5 4 3 8 8 C 1.38920 * 120.03556 * 359.95123 * 7 5 4 9 9 C 1.40236 * 120.20274 * 180.02562 * 3 2 1 10 10 C 1.46558 * 133.83959 * 359.94647 * 9 3 2 11 11 C 1.34376 * 107.06579 * 180.02562 * 10 9 3 12 12 N 1.37068 * 109.88607 * 359.97438 * 11 10 9 13 13 C 1.37205 * 125.10917 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99640 * 159.01244 * 13 12 11 15 15 C 1.38740 * 120.00179 * 339.01207 * 13 12 11 16 16 N 1.31511 * 119.99713 * 349.12509 * 15 13 12 17 17 Si 1.86797 * 119.99898 * 169.12304 * 15 13 12 18 18 H 1.48505 * 109.47162 * 90.00428 * 17 15 13 19 19 H 1.48501 * 109.47060 * 209.99922 * 17 15 13 20 20 H 1.48493 * 109.47291 * 329.99997 * 17 15 13 21 21 H 1.09003 * 109.46986 * 60.00098 * 1 2 3 22 22 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46688 * 300.00330 * 1 2 3 24 24 H 1.07998 * 119.90438 * 359.75084 * 4 3 2 25 25 H 0.96996 * 120.00283 * 0.02562 * 6 5 4 26 26 H 0.97000 * 119.99507 * 180.02562 * 6 5 4 27 27 H 1.08010 * 119.98044 * 179.97438 * 7 5 4 28 28 H 1.08003 * 126.47265 * 0.05337 * 10 9 3 29 29 H 1.08002 * 125.06253 * 179.97438 * 11 10 9 30 30 H 0.97010 * 119.99683 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 6 1.2003 2.6654 -0.0005 5 6 1.5134 4.0208 -0.0011 6 7 0.4874 4.9685 -0.0022 7 6 2.8366 4.4394 -0.0017 8 6 3.8622 3.5024 -0.0008 9 6 3.5501 2.1315 -0.0005 10 6 4.8324 1.4218 -0.0002 11 6 5.7995 2.3549 -0.0005 12 7 5.2400 3.6062 -0.0016 13 6 5.9426 4.7847 -0.0017 14 1 5.4692 5.6955 -0.3376 15 6 7.2611 4.8064 0.4297 16 7 7.7720 3.7569 1.0355 17 14 8.3104 6.3262 0.1498 18 1 8.1758 7.2414 1.3115 19 1 9.7321 5.9250 -0.0021 20 1 7.8577 7.0203 -1.0823 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.1670 2.3516 -0.0050 25 1 -0.4388 4.6805 -0.0021 26 1 0.7011 5.9146 -0.0029 27 1 3.0690 5.4942 -0.0026 28 1 4.9736 0.3511 -0.0002 29 1 6.8598 2.1495 0.0000 30 1 8.6938 3.7722 1.3374 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063022856.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:12 Heat of formation + Delta-G solvation = 39.305007 kcal Electronic energy + Delta-G solvation = -15334.991457 eV Core-core repulsion = 12834.791185 eV Total energy + Delta-G solvation = -2500.200272 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69711 -38.47207 -35.45669 -33.93745 -32.17125 -30.97963 -29.37443 -27.95123 -26.66722 -23.61131 -22.02856 -21.65434 -19.77077 -17.88988 -17.69378 -16.85762 -16.76060 -16.42651 -15.68708 -15.30342 -14.80346 -14.75407 -14.41444 -14.37429 -13.65251 -13.54641 -13.34598 -13.10943 -12.84876 -12.51115 -12.40978 -12.17903 -11.84545 -11.60869 -10.98683 -10.92836 -9.82565 -9.21628 -8.57889 -8.43386 -7.63956 -6.19535 0.36445 0.76973 1.06722 1.36654 1.43486 1.52556 1.71193 2.12566 2.26154 2.92385 2.95012 3.27324 3.38954 4.23325 4.35402 4.37525 4.43845 4.63123 4.67508 4.92328 5.00945 5.11716 5.13248 5.28624 5.37829 5.50390 5.64430 5.80644 6.01759 6.39763 6.59615 6.77505 7.17060 7.23620 7.62014 8.48025 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.031120 B = 0.006857 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.535024 B = 4082.665745 C = 4926.734869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.149 6.149 3 C -0.012 4.012 4 C -0.233 4.233 5 C 0.231 3.769 6 N -0.866 5.866 7 C -0.230 4.230 8 C 0.081 3.919 9 C -0.166 4.166 10 C -0.265 4.265 11 C 0.050 3.950 12 N -0.317 5.317 13 C -0.370 4.370 14 H 0.104 0.896 15 C -0.002 4.002 16 N -0.888 5.888 17 Si 1.013 2.987 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.259 1.259 21 H 0.091 0.909 22 H 0.127 0.873 23 H 0.090 0.910 24 H 0.147 0.853 25 H 0.407 0.593 26 H 0.402 0.598 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.158 0.842 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 -0.892 -1.895 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.093 5.907 3 C -0.125 4.125 4 C -0.262 4.262 5 C 0.124 3.876 6 N -0.408 5.408 7 C -0.259 4.259 8 C -0.034 4.034 9 C -0.176 4.176 10 C -0.290 4.290 11 C -0.082 4.082 12 N 0.018 4.982 13 C -0.497 4.497 14 H 0.121 0.879 15 C -0.206 4.206 16 N -0.521 5.521 17 Si 0.833 3.167 18 H -0.191 1.191 19 H -0.194 1.194 20 H -0.183 1.183 21 H 0.110 0.890 22 H 0.146 0.854 23 H 0.109 0.891 24 H 0.165 0.835 25 H 0.237 0.763 26 H 0.231 0.769 27 H 0.124 0.876 28 H 0.154 0.846 29 H 0.175 0.825 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.371 -1.792 -1.796 11.650 hybrid contribution 0.030 1.916 0.120 1.920 sum -11.341 0.124 -1.677 11.465 Atomic orbital electron populations 1.23739 0.91820 1.08266 1.06313 1.85352 1.09428 1.03372 1.92595 1.20885 0.93572 0.96533 1.01545 1.20410 0.98178 0.90629 1.17031 1.16971 0.87261 0.89241 0.94160 1.42092 1.05909 1.06759 1.86072 1.19233 0.90125 0.97133 1.19433 1.18415 0.84502 0.94746 1.05725 1.18598 0.92207 0.92487 1.14342 1.21370 0.90348 0.97615 1.19695 1.22040 0.98934 0.83133 1.04092 1.40349 1.02495 1.05563 1.49779 1.20093 0.96126 0.87626 1.45846 0.87866 1.26489 0.98386 1.02574 0.93159 1.70049 1.16359 1.31784 1.33934 0.84666 0.76732 0.75948 0.79371 1.19092 1.19386 1.18254 0.88986 0.85417 0.89115 0.83515 0.76307 0.76941 0.87607 0.84619 0.82494 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.15 113.37 1.04 -1.63 16 2 S -0.15 -4.91 22.46 -56.49 -1.27 -6.18 16 3 C -0.01 -0.48 6.14 22.84 0.14 -0.34 16 4 C -0.23 -8.17 9.19 22.56 0.21 -7.96 16 5 C 0.23 8.36 6.74 38.23 0.26 8.62 16 6 N -0.87 -21.58 9.08 -51.33 -0.47 -22.04 16 7 C -0.23 -10.35 9.77 22.56 0.22 -10.13 16 8 C 0.08 4.27 6.75 38.89 0.26 4.54 16 9 C -0.17 -8.29 6.19 -20.04 -0.12 -8.42 16 10 C -0.27 -13.61 10.93 23.56 0.26 -13.35 16 11 C 0.05 2.80 9.90 82.99 0.82 3.62 16 12 N -0.32 -17.99 2.92 -342.94 -1.00 -18.99 16 13 C -0.37 -20.60 9.92 83.97 0.83 -19.77 16 14 H 0.10 5.48 7.85 -2.91 -0.02 5.46 16 15 C 0.00 -0.11 5.35 84.86 0.45 0.34 16 16 N -0.89 -48.68 10.85 21.63 0.23 -48.45 16 17 Si 1.01 40.21 29.56 68.60 2.03 42.24 16 18 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 19 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H 0.09 1.66 7.75 -2.39 -0.02 1.64 16 22 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.09 1.67 7.76 -2.39 -0.02 1.65 16 24 H 0.15 3.88 5.88 -2.91 -0.02 3.87 16 25 H 0.41 7.46 8.83 -92.71 -0.82 6.64 16 26 H 0.40 8.86 8.83 -92.71 -0.82 8.04 16 27 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 28 H 0.14 6.32 8.06 -2.91 -0.02 6.29 16 29 H 0.16 8.86 6.34 -2.91 -0.02 8.85 16 30 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -67.26 272.04 3.45 -63.81 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.45 Total: 34.11 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 4.37 Total: -44.49 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -1.23 Total: -89.49 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: -4.91 SS G_CDS: -1.27 Total: -6.18 kcal Total: -67.26 3.45 -63.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063022856.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.115 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds