Wall clock time and date at job start Mon Mar 30 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46732 * 2 1 4 4 C 1.33638 * 125.11334 * 90.26125 * 3 2 1 5 5 C 1.37950 * 115.07707 * 180.19523 * 4 3 2 6 6 C 1.34939 * 114.67383 * 359.52625 * 5 4 3 7 7 C 1.47711 * 125.27849 * 180.27269 * 6 5 4 8 8 C 1.36180 * 126.10831 * 180.02562 * 7 6 5 9 9 N 1.36927 * 106.72165 * 180.02562 * 8 7 6 10 10 C 1.37447 * 126.31460 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99595 * 0.02562 * 10 9 8 12 12 C 1.38853 * 120.00016 * 179.97438 * 10 9 8 13 13 N 1.31381 * 119.99877 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99901 * 179.97438 * 12 10 9 15 15 H 1.48492 * 109.46985 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46707 * 120.00078 * 14 12 10 17 17 H 1.48500 * 109.46954 * 240.00115 * 14 12 10 18 18 C 1.36447 * 107.37005 * 0.02562 * 9 8 7 19 19 N 1.30275 * 108.91117 * 359.72178 * 18 9 8 20 20 S 1.75852 * 125.10862 * 269.97153 * 3 2 1 21 21 H 1.09000 * 109.47500 * 300.00295 * 1 2 3 22 22 H 1.08997 * 109.47538 * 60.00206 * 1 2 3 23 23 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47060 * 239.99861 * 2 1 3 25 25 H 1.09004 * 109.46866 * 119.99278 * 2 1 3 26 26 H 1.08007 * 122.46344 * 359.96768 * 4 3 2 27 27 H 1.08002 * 122.66796 * 179.80614 * 5 4 3 28 28 H 1.07998 * 126.63772 * 0.02562 * 8 7 6 29 29 H 0.97001 * 119.99863 * 180.02562 * 13 12 10 30 30 H 1.08000 * 125.54551 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2931 2.1439 1.0932 5 6 2.7408 3.4264 0.8528 6 6 2.8551 3.7477 -0.4528 7 6 3.3164 5.0508 -0.9735 8 6 3.4377 5.3931 -2.2859 9 7 3.8951 6.6834 -2.3159 10 6 4.1593 7.4274 -3.4409 11 1 4.0071 6.9982 -4.4202 12 6 4.6210 8.7312 -3.3184 13 7 4.8057 9.2535 -2.1271 14 14 4.9807 9.7422 -4.8475 15 1 4.6936 8.9298 -6.0568 16 1 4.1240 10.9551 -4.8517 17 1 6.4099 10.1455 -4.8492 18 6 4.0414 7.0938 -1.0228 19 7 3.6910 6.1220 -0.2292 20 16 2.3700 2.3741 -1.4386 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 2.1596 1.7541 2.0916 27 1 2.9849 4.1170 1.6465 28 1 3.2159 4.7680 -3.1382 29 1 5.1279 10.1644 -2.0415 30 1 4.3865 8.0677 -0.7085 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074109169.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:55 Heat of formation + Delta-G solvation = 69.470731 kcal Electronic energy + Delta-G solvation = -14751.146023 eV Core-core repulsion = 12252.253835 eV Total energy + Delta-G solvation = -2498.892188 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36176 -37.39892 -34.32563 -33.39624 -31.16162 -29.28136 -26.88773 -25.37603 -23.83549 -21.87099 -20.45748 -19.98569 -18.76849 -17.27512 -16.19155 -15.50396 -14.93808 -14.32424 -13.98613 -13.83292 -13.56019 -12.84997 -12.77412 -12.58440 -12.21365 -11.79955 -11.69563 -11.39964 -11.38235 -11.23423 -11.16468 -10.79446 -10.61282 -10.21269 -9.92427 -8.79586 -8.67035 -8.13969 -7.92246 -6.92804 -6.69640 -4.65037 1.42589 2.11685 2.56681 2.81772 2.92838 2.99615 3.15675 3.66905 3.72348 4.64434 4.82719 4.91502 4.99325 5.14857 5.38215 5.64156 5.68875 5.84418 5.89704 6.01271 6.20563 6.31702 6.33666 6.55655 6.80324 6.84820 6.89811 7.06174 7.25879 7.35081 7.94643 8.32576 8.57461 9.25201 9.59451 10.05749 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.057618 B = 0.004695 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.844101 B = 5962.812284 C = 6349.404130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C -0.218 4.218 4 C -0.116 4.116 5 C -0.167 4.167 6 C -0.031 4.031 7 C -0.003 4.003 8 C -0.098 4.098 9 N -0.267 5.267 10 C -0.331 4.331 11 H 0.112 0.888 12 C 0.041 3.959 13 N -0.845 5.845 14 Si 0.955 3.045 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.272 1.272 18 C 0.152 3.848 19 N -0.515 5.515 20 S 0.087 5.913 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.139 0.861 28 H 0.149 0.851 29 H 0.285 0.715 30 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 -10.033 0.356 10.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 C -0.336 4.336 4 C -0.147 4.147 5 C -0.196 4.196 6 C -0.150 4.150 7 C -0.136 4.136 8 C -0.243 4.243 9 N 0.070 4.930 10 C -0.461 4.461 11 H 0.130 0.870 12 C -0.168 4.168 13 N -0.476 5.476 14 Si 0.778 3.222 15 H -0.187 1.187 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.129 4.129 19 N -0.234 5.234 20 S 0.350 5.650 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.166 0.834 29 H 0.096 0.904 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.992 -9.878 -0.363 10.661 hybrid contribution 0.299 0.840 -0.032 0.892 sum -3.694 -9.038 -0.395 9.772 Atomic orbital electron populations 1.21795 0.95015 1.01209 1.02467 1.19933 0.95620 0.90324 1.02363 1.24242 1.12765 1.00687 0.95860 1.19867 1.02196 0.94186 0.98444 1.20136 1.06682 0.96758 0.96050 1.21949 1.02989 0.94978 0.95042 1.17868 1.13510 0.92551 0.89667 1.22077 1.15694 0.88984 0.97530 1.41830 1.35594 1.07992 1.07588 1.20132 1.44396 0.95355 0.86217 0.86995 1.25603 0.94639 0.97054 0.99468 1.69481 1.39216 1.16380 1.22564 0.85419 0.78679 0.78959 0.79109 1.18664 1.19683 1.19676 1.26508 1.06863 1.01068 0.78485 1.70439 1.19815 0.99751 1.33413 1.83852 1.66057 1.05354 1.09700 0.92459 0.92522 0.92673 0.91440 0.90737 0.85323 0.84371 0.83375 0.90397 0.75268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 37.16 0.37 -1.16 16 2 C -0.04 -0.50 6.43 -27.88 -0.18 -0.67 16 3 C -0.22 -3.33 5.76 -35.92 -0.21 -3.54 16 4 C -0.12 -1.88 10.03 -41.30 -0.41 -2.30 16 5 C -0.17 -3.26 10.07 -40.86 -0.41 -3.67 16 6 C -0.03 -0.66 6.43 -36.88 -0.24 -0.90 16 7 C 0.00 -0.07 6.96 -83.02 -0.58 -0.65 16 8 C -0.10 -2.42 11.24 -16.02 -0.18 -2.60 16 9 N -0.27 -7.13 2.91 -62.89 -0.18 -7.31 16 10 C -0.33 -8.43 10.21 -14.81 -0.15 -8.58 16 11 H 0.11 2.64 7.83 -52.49 -0.41 2.23 16 12 C 0.04 0.99 5.48 -17.52 -0.10 0.89 16 13 N -0.84 -20.94 10.14 55.49 0.56 -20.38 16 14 Si 0.95 18.10 29.55 -169.99 -5.02 13.07 16 15 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 16 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 17 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 18 C 0.15 4.12 11.47 -89.26 -1.02 3.10 16 19 N -0.51 -13.79 11.26 -10.82 -0.12 -13.91 16 20 S 0.09 1.51 23.07 -107.50 -2.48 -0.97 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 27 H 0.14 2.75 8.06 -52.49 -0.42 2.33 16 28 H 0.15 3.26 8.06 -52.49 -0.42 2.84 16 29 H 0.28 6.41 8.31 -40.82 -0.34 6.07 16 30 H 0.23 6.25 5.44 -52.49 -0.29 5.97 16 LS Contribution 278.68 15.07 4.20 4.20 Total: -1.00 -28.04 278.68 -9.37 -37.41 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -3.21 Total: 7.97 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -3.11 Total: -20.09 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.26 Total: -41.60 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.07 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.48 Total: -0.97 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.04 -9.37 -37.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074109169.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.883 kcal (2) G-P(sol) polarization free energy of solvation -28.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds