Wall clock time and date at job start Mon Mar 30 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39546 * 125.70887 * 2 1 4 4 C 1.36651 * 107.83653 * 180.12116 * 3 2 1 5 5 C 1.47981 * 126.33343 * 179.90094 * 4 3 2 6 6 C 1.39487 * 122.80350 * 319.91556 * 5 4 3 7 7 C 1.33005 * 114.91773 * 180.27180 * 6 5 4 8 8 S 1.75802 * 109.97444 * 359.75077 * 7 6 5 9 9 C 1.34727 * 122.79801 * 139.71248 * 5 4 3 10 10 C 1.50706 * 125.23488 * 0.02562 * 9 5 4 11 11 C 1.50699 * 109.47009 * 89.71399 * 10 9 5 12 12 H 1.07998 * 120.00442 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99881 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99836 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46975 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47007 * 120.00266 * 15 13 11 18 18 H 1.48504 * 109.47018 * 239.99934 * 15 13 11 19 19 N 1.36258 * 107.32381 * 359.64218 * 4 3 2 20 20 H 0.96998 * 126.13324 * 180.26524 * 19 4 3 21 21 N 1.30876 * 125.70653 * 179.71018 * 2 1 3 22 22 H 1.08996 * 109.47250 * 270.26513 * 1 2 3 23 23 H 1.09006 * 109.47163 * 30.26121 * 1 2 3 24 24 H 1.08998 * 109.47260 * 150.26260 * 1 2 3 25 25 H 1.08001 * 126.07799 * 359.97438 * 3 2 1 26 26 H 1.08005 * 122.54270 * 0.04876 * 6 5 4 27 27 H 1.08003 * 125.01595 * 179.73796 * 7 6 5 28 28 H 1.09003 * 109.47012 * 209.71913 * 10 9 5 29 29 H 1.09004 * 109.46428 * 329.71655 * 10 9 5 30 30 H 0.96999 * 119.99754 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3214 1.1331 0.0000 4 6 3.6220 0.7137 -0.0028 5 6 4.8223 1.5792 -0.0058 6 6 4.9089 2.7485 -0.7614 7 6 6.0615 3.4029 -0.6512 8 16 7.1314 2.5525 0.4547 9 6 5.9211 1.3057 0.7241 10 6 6.0896 0.1112 1.6276 11 6 6.6745 -1.0342 0.8421 12 1 6.9018 -0.9097 -0.2063 13 6 6.9193 -2.2412 1.4619 14 7 6.6420 -2.3931 2.7385 15 14 7.6449 -3.6608 0.4884 16 1 7.8635 -3.2362 -0.9176 17 1 8.9408 -4.0635 1.0917 18 1 6.7066 -4.8116 0.5173 19 7 3.6089 -0.6488 0.0037 20 1 4.3868 -1.2282 0.0072 21 7 2.2707 -1.0627 0.0054 22 1 -0.3633 0.0048 1.0276 23 1 -0.3634 0.8877 -0.5179 24 1 -0.3634 -0.8923 -0.5097 25 1 1.9838 2.1590 -0.0004 26 1 4.1025 3.0943 -1.3912 27 1 6.3046 4.3211 -1.1653 28 1 6.7591 0.3682 2.4485 29 1 5.1189 -0.1810 2.0282 30 1 6.8139 -3.2423 3.1745 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074109197.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:05 Heat of formation + Delta-G solvation = 82.722785 kcal Electronic energy + Delta-G solvation = -15357.899351 eV Core-core repulsion = 12859.581815 eV Total energy + Delta-G solvation = -2498.317536 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.54645 -37.36413 -33.63920 -32.30018 -30.76753 -29.64817 -27.24145 -26.63539 -24.02832 -21.97507 -20.88767 -19.18933 -18.38183 -16.72413 -16.34531 -16.31086 -14.69490 -14.50923 -14.22639 -13.17779 -13.07128 -12.95927 -12.73754 -12.51310 -12.39590 -12.16137 -11.78557 -11.72114 -11.19363 -10.87502 -10.68819 -10.28322 -10.10652 -9.97139 -9.72315 -8.93561 -8.67455 -8.31738 -7.98376 -7.50777 -6.29801 -4.39780 1.48654 2.14009 2.31398 2.56941 3.07718 3.15986 3.25313 3.28370 3.48056 3.75671 4.23292 5.04700 5.09907 5.32821 5.44598 5.60474 5.77877 5.85307 5.98184 6.12918 6.18626 6.26264 6.33726 6.56855 6.81086 6.90203 7.21419 7.22788 7.34866 7.63720 7.96005 8.06315 8.38044 8.67936 9.27459 10.78053 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.010294 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.943294 B = 2719.359398 C = 4217.608772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.057 3.943 3 C -0.278 4.278 4 C 0.177 3.823 5 C -0.109 4.109 6 C -0.096 4.096 7 C -0.250 4.250 8 S 0.098 5.902 9 C -0.082 4.082 10 C 0.069 3.931 11 C -0.534 4.534 12 H 0.063 0.937 13 C 0.067 3.933 14 N -0.878 5.878 15 Si 0.894 3.106 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.445 5.445 20 H 0.452 0.548 21 N -0.300 5.300 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.158 0.842 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 8.755 -5.262 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C -0.308 4.308 4 C 0.044 3.956 5 C -0.121 4.121 6 C -0.127 4.127 7 C -0.385 4.385 8 S 0.362 5.638 9 C -0.202 4.202 10 C 0.030 3.970 11 C -0.573 4.573 12 H 0.081 0.919 13 C -0.138 4.138 14 N -0.514 5.514 15 Si 0.720 3.280 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.157 5.157 20 H 0.304 0.696 21 N -0.126 5.126 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.157 0.843 26 H 0.153 0.847 27 H 0.175 0.825 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.760 7.624 -4.587 9.659 hybrid contribution -0.444 -0.358 -0.912 1.076 sum -4.204 7.266 -5.499 10.036 Atomic orbital electron populations 1.20080 0.87463 1.02565 1.02431 1.22043 0.96577 0.90925 1.01188 1.21090 0.90519 0.99189 1.20000 1.19075 0.93234 0.84094 0.99211 1.16911 0.93569 0.97412 1.04254 1.19851 0.98048 0.94421 1.00418 1.25188 0.98586 1.06046 1.08639 1.84184 1.19238 1.17621 1.42722 1.25717 0.93966 0.99912 1.00581 1.18127 0.99004 0.87027 0.92799 1.21069 1.44180 0.95511 0.96537 0.91901 1.25048 0.94909 0.98825 0.94973 1.69953 1.46075 1.25614 1.09786 0.86486 0.79173 0.81957 0.80342 1.19346 1.20498 1.20509 1.47193 1.07090 1.05150 1.56316 0.69614 1.77159 0.87202 1.22741 1.25479 0.91042 0.90984 0.91406 0.84256 0.84703 0.82451 0.94468 0.93811 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.44 36.00 0.38 -0.47 16 2 C 0.06 1.02 7.19 -82.52 -0.59 0.43 16 3 C -0.28 -4.97 10.57 -39.67 -0.42 -5.39 16 4 C 0.18 3.56 6.23 -82.48 -0.51 3.05 16 5 C -0.11 -2.13 5.73 -106.68 -0.61 -2.74 16 6 C -0.10 -1.56 9.90 -40.93 -0.41 -1.97 16 7 C -0.25 -3.76 11.18 28.92 0.32 -3.44 16 8 S 0.10 1.71 23.31 -107.50 -2.51 -0.80 16 9 C -0.08 -1.72 5.74 -35.55 -0.20 -1.93 16 10 C 0.07 1.69 4.70 -29.03 -0.14 1.56 16 11 C -0.53 -13.77 7.31 -34.44 -0.25 -14.02 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.88 -24.50 13.29 55.43 0.74 -23.77 16 15 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 N -0.45 -9.72 6.66 33.28 0.22 -9.49 16 20 H 0.45 10.42 6.72 -182.62 -1.23 9.20 16 21 N -0.30 -6.28 12.68 33.61 0.43 -5.86 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 27 H 0.16 1.85 8.06 -52.48 -0.42 1.42 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 1.16 7.21 -51.93 -0.37 0.79 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 277.98 15.07 4.19 4.19 Total: -1.00 -28.47 277.98 -8.59 -37.06 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.10 Total: 6.47 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.53 Total: -23.24 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 1.38 Total: -39.12 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.51 Total: -0.80 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.47 -8.59 -37.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074109197.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.780 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds