Wall clock time and date at job start Mon Mar 30 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39546 * 125.70887 * 2 1 4 4 C 1.36651 * 107.83653 * 180.12116 * 3 2 1 5 5 C 1.47981 * 126.33343 * 179.90094 * 4 3 2 6 6 C 1.39487 * 122.80350 * 319.91556 * 5 4 3 7 7 C 1.33005 * 114.91773 * 180.27180 * 6 5 4 8 8 S 1.75802 * 109.97444 * 359.75077 * 7 6 5 9 9 C 1.34727 * 122.79801 * 139.71248 * 5 4 3 10 10 C 1.50706 * 125.23488 * 0.02562 * 9 5 4 11 11 C 1.50699 * 109.47009 * 89.71399 * 10 9 5 12 12 H 1.07998 * 120.00442 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99881 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99836 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46975 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47007 * 120.00266 * 15 13 11 18 18 H 1.48504 * 109.47018 * 239.99934 * 15 13 11 19 19 N 1.36258 * 107.32381 * 359.64218 * 4 3 2 20 20 H 0.96998 * 126.13324 * 180.26524 * 19 4 3 21 21 N 1.30876 * 125.70653 * 179.71018 * 2 1 3 22 22 H 1.08996 * 109.47250 * 270.26513 * 1 2 3 23 23 H 1.09006 * 109.47163 * 30.26121 * 1 2 3 24 24 H 1.08998 * 109.47260 * 150.26260 * 1 2 3 25 25 H 1.08001 * 126.07799 * 359.97438 * 3 2 1 26 26 H 1.08005 * 122.54270 * 0.04876 * 6 5 4 27 27 H 1.08003 * 125.01595 * 179.73796 * 7 6 5 28 28 H 1.09003 * 109.47012 * 209.71913 * 10 9 5 29 29 H 1.09004 * 109.46428 * 329.71655 * 10 9 5 30 30 H 0.96999 * 119.99754 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3214 1.1331 0.0000 4 6 3.6220 0.7137 -0.0028 5 6 4.8223 1.5792 -0.0058 6 6 4.9089 2.7485 -0.7614 7 6 6.0615 3.4029 -0.6512 8 16 7.1314 2.5525 0.4547 9 6 5.9211 1.3057 0.7241 10 6 6.0896 0.1112 1.6276 11 6 6.6745 -1.0342 0.8421 12 1 6.9018 -0.9097 -0.2063 13 6 6.9193 -2.2412 1.4619 14 7 6.6420 -2.3931 2.7385 15 14 7.6449 -3.6608 0.4884 16 1 7.8635 -3.2362 -0.9176 17 1 8.9408 -4.0635 1.0917 18 1 6.7066 -4.8116 0.5173 19 7 3.6089 -0.6488 0.0037 20 1 4.3868 -1.2282 0.0072 21 7 2.2707 -1.0627 0.0054 22 1 -0.3633 0.0048 1.0276 23 1 -0.3634 0.8877 -0.5179 24 1 -0.3634 -0.8923 -0.5097 25 1 1.9838 2.1590 -0.0004 26 1 4.1025 3.0943 -1.3912 27 1 6.3046 4.3211 -1.1653 28 1 6.7591 0.3682 2.4485 29 1 5.1189 -0.1810 2.0282 30 1 6.8139 -3.2423 3.1745 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074109197.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:05 Heat of formation + Delta-G solvation = 66.141692 kcal Electronic energy + Delta-G solvation = -15358.618361 eV Core-core repulsion = 12859.581815 eV Total energy + Delta-G solvation = -2499.036546 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.01423 -38.78354 -35.54980 -33.70009 -32.42945 -31.17653 -28.50390 -28.30189 -25.74317 -23.63273 -22.27707 -20.57315 -19.84186 -18.67339 -17.92272 -17.80001 -16.49214 -15.97499 -15.60294 -14.74526 -14.47468 -14.46064 -14.19008 -14.11159 -13.66603 -13.48295 -13.32307 -13.05881 -12.86838 -12.65996 -12.33269 -11.99229 -11.66500 -11.60706 -11.50357 -10.73351 -10.40582 -9.78341 -9.39457 -8.97173 -8.32503 -6.49466 0.02928 0.73370 0.92189 1.20937 1.32410 1.35293 1.46239 1.70262 2.01860 2.24960 2.33365 2.99641 3.78712 3.98152 4.16208 4.30890 4.55955 4.65494 4.78808 4.89450 4.93170 4.97911 5.12187 5.16871 5.23957 5.25776 5.50666 5.57601 5.66703 5.90376 5.96593 6.45467 6.63851 6.88042 7.21186 8.75029 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.010294 C = 0.006637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.943294 B = 2719.359398 C = 4217.608772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.060 3.940 3 C -0.270 4.270 4 C 0.151 3.849 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.215 4.215 8 S 0.106 5.894 9 C -0.137 4.137 10 C 0.087 3.913 11 C -0.532 4.532 12 H 0.059 0.941 13 C 0.018 3.982 14 N -0.916 5.916 15 Si 0.956 3.044 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.279 1.279 19 N -0.471 5.471 20 H 0.440 0.560 21 N -0.340 5.340 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.174 0.826 26 H 0.168 0.832 27 H 0.203 0.797 28 H 0.008 0.992 29 H 0.011 0.989 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 10.818 -7.215 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C -0.299 4.299 4 C 0.020 3.980 5 C -0.113 4.113 6 C -0.139 4.139 7 C -0.349 4.349 8 S 0.371 5.629 9 C -0.257 4.257 10 C 0.048 3.952 11 C -0.571 4.571 12 H 0.078 0.922 13 C -0.182 4.182 14 N -0.554 5.554 15 Si 0.780 3.220 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.205 1.205 19 N -0.182 5.182 20 H 0.288 0.712 21 N -0.165 5.165 22 H 0.103 0.897 23 H 0.123 0.877 24 H 0.091 0.909 25 H 0.191 0.809 26 H 0.185 0.815 27 H 0.220 0.780 28 H 0.026 0.974 29 H 0.029 0.971 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.663 9.710 -6.546 12.605 hybrid contribution -0.245 -0.882 -0.329 0.972 sum -4.908 8.829 -6.875 12.219 Atomic orbital electron populations 1.20295 0.83711 1.04470 1.03850 1.22940 0.98800 0.90093 0.98661 1.21534 0.89405 1.00749 1.18259 1.19582 0.94722 0.83738 1.00002 1.17264 0.92556 0.98045 1.03429 1.20070 0.99687 0.93332 1.00859 1.25713 0.96822 1.06263 1.06140 1.84070 1.18775 1.16543 1.43528 1.25338 0.96702 1.00958 1.02660 1.17650 0.96243 0.88724 0.92574 1.21251 1.43261 0.96224 0.96335 0.92229 1.25840 0.95337 1.01329 0.95744 1.70067 1.47698 1.26283 1.11396 0.85527 0.78397 0.78811 0.79275 1.18557 1.19902 1.20489 1.47210 1.07104 1.05777 1.58072 0.71159 1.77130 0.87218 1.24681 1.27455 0.89715 0.87750 0.90856 0.80872 0.81471 0.77971 0.97419 0.97140 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.45 10.44 71.23 0.74 -0.71 16 2 C 0.06 2.06 7.19 43.01 0.31 2.37 16 3 C -0.27 -9.12 10.57 22.21 0.23 -8.88 16 4 C 0.15 6.08 6.23 40.67 0.25 6.33 16 5 C -0.10 -3.81 5.73 -21.20 -0.12 -3.93 16 6 C -0.11 -3.19 9.90 21.40 0.21 -2.98 16 7 C -0.21 -5.59 11.18 66.65 0.75 -4.84 16 8 S 0.11 3.58 23.31 -56.49 -1.32 2.26 16 9 C -0.14 -5.86 5.74 24.88 0.14 -5.72 16 10 C 0.09 4.50 4.70 29.10 0.14 4.63 16 11 C -0.53 -28.60 7.31 25.60 0.19 -28.41 16 12 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 13 C 0.02 1.01 5.46 84.66 0.46 1.47 16 14 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 15 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 N -0.47 -21.27 6.66 -48.61 -0.32 -21.59 16 20 H 0.44 21.48 6.72 -213.34 -1.43 20.04 16 21 N -0.34 -14.40 12.68 -47.57 -0.60 -15.00 16 22 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.17 4.51 8.06 -2.91 -0.02 4.49 16 26 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 27 H 0.20 3.47 8.06 -2.91 -0.02 3.44 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.01 0.60 7.21 -2.39 -0.02 0.58 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -65.17 277.98 3.10 -62.07 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.27 Total: 21.06 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 3.31 Total: -40.67 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -0.64 Total: -89.78 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.32 Total: 2.26 kcal Total: -65.17 3.10 -62.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074109197.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.209 kcal (2) G-P(sol) polarization free energy of solvation -65.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds