Wall clock time and date at job start Mon Mar 30 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39539 * 126.08467 * 2 1 4 4 N 1.30872 * 108.58740 * 180.29040 * 3 2 1 5 5 N 1.40071 * 108.51764 * 359.76121 * 4 3 2 6 6 H 0.97002 * 126.13267 * 180.02562 * 5 4 3 7 7 C 1.36261 * 107.73298 * 0.02562 * 5 4 3 8 8 C 1.47988 * 126.33670 * 179.97438 * 7 5 4 9 9 C 1.39479 * 122.79975 * 64.98843 * 8 7 5 10 10 C 1.33017 * 114.91861 * 180.02562 * 9 8 7 11 11 S 1.75808 * 109.96974 * 359.75953 * 10 9 8 12 12 C 1.34734 * 122.79938 * 245.02707 * 8 7 5 13 13 C 1.50697 * 125.23578 * 359.94467 * 12 8 7 14 14 C 1.50700 * 109.47266 * 89.99703 * 13 12 8 15 15 H 1.07999 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.37885 * 120.00047 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99792 * 359.72305 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47163 * 59.99902 * 18 16 14 20 20 H 1.48495 * 109.47159 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47290 * 299.99897 * 18 16 14 22 22 H 1.08996 * 109.47102 * 270.12713 * 1 2 3 23 23 H 1.09005 * 109.46979 * 30.11638 * 1 2 3 24 24 H 1.08994 * 109.47337 * 150.12093 * 1 2 3 25 25 H 1.07997 * 125.70463 * 0.08375 * 3 2 1 26 26 H 1.08003 * 122.54242 * 0.02562 * 9 8 7 27 27 H 1.07993 * 125.01269 * 179.97438 * 10 9 8 28 28 H 1.09004 * 109.47205 * 329.99797 * 13 12 8 29 29 H 1.08997 * 109.47395 * 210.00289 * 13 12 8 30 30 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3288 1.1277 0.0000 4 7 3.5770 0.7342 -0.0063 5 7 3.6019 -0.6663 -0.0050 6 1 4.3954 -1.2242 -0.0084 7 6 2.3117 -1.1044 0.0017 8 6 1.8646 -2.5151 0.0048 9 6 2.1143 -3.3845 1.0665 10 6 1.6424 -4.6175 0.9040 11 16 0.8249 -4.7481 -0.6470 12 6 1.1832 -3.0670 -1.0182 13 6 0.7836 -2.3518 -2.2830 14 6 1.8752 -2.5015 -3.3111 15 1 2.7688 -3.0592 -3.0726 16 6 1.7331 -1.9265 -4.5563 17 7 0.6425 -1.2520 -4.8485 18 14 3.0859 -2.1128 -5.8308 19 1 3.2959 -3.5536 -6.1229 20 1 2.6921 -1.4079 -7.0771 21 1 4.3448 -1.5254 -5.3060 22 1 -0.3633 0.0023 1.0276 23 1 -0.3633 0.8890 -0.5157 24 1 -0.3634 -0.8910 -0.5119 25 1 1.9913 2.1536 0.0013 26 1 2.6501 -3.0797 1.9533 27 1 1.7433 -5.4190 1.6208 28 1 0.6286 -1.2943 -2.0690 29 1 -0.1401 -2.7836 -2.6682 30 1 0.5428 -0.8472 -5.7243 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074109198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:10 Heat of formation + Delta-G solvation = 71.781920 kcal Electronic energy + Delta-G solvation = -15599.840267 eV Core-core repulsion = 13101.048300 eV Total energy + Delta-G solvation = -2498.791967 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.04017 -38.74313 -35.39454 -33.48510 -32.61117 -31.71485 -28.68496 -27.20073 -25.39023 -23.58647 -22.82855 -21.20472 -19.49611 -18.61379 -17.94834 -17.58078 -16.50555 -16.07600 -15.51484 -14.90356 -14.74843 -14.33737 -14.16166 -13.81460 -13.60709 -13.44980 -13.32707 -12.95449 -12.76765 -12.58679 -12.25695 -11.90677 -11.68163 -11.57562 -11.46946 -10.59309 -10.45479 -9.53045 -9.36957 -8.98997 -8.21888 -6.33288 0.14536 0.73104 0.90281 1.23447 1.35233 1.36568 1.44102 1.64239 1.93226 2.24456 2.38008 3.10165 3.84940 3.96244 4.19026 4.41452 4.52339 4.64929 4.77178 4.89830 4.97411 5.04515 5.24296 5.28906 5.29704 5.38841 5.55083 5.69325 5.71971 5.85251 6.11959 6.42716 6.75245 6.78808 7.33421 8.86548 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.010631 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.885148 B = 2633.162147 C = 3587.272455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.241 4.241 3 C 0.048 3.952 4 N -0.321 5.321 5 N -0.472 5.472 6 H 0.442 0.558 7 C 0.164 3.836 8 C -0.101 4.101 9 C -0.119 4.119 10 C -0.216 4.216 11 S 0.102 5.898 12 C -0.112 4.112 13 C 0.082 3.918 14 C -0.525 4.525 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.920 5.920 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.277 1.277 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.209 0.791 26 H 0.157 0.843 27 H 0.199 0.801 28 H 0.040 0.960 29 H 0.004 0.996 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -2.903 11.999 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.252 4.252 3 C -0.137 4.137 4 N -0.143 5.143 5 N -0.181 5.181 6 H 0.287 0.713 7 C 0.033 3.967 8 C -0.115 4.115 9 C -0.149 4.149 10 C -0.351 4.351 11 S 0.366 5.634 12 C -0.231 4.231 13 C 0.044 3.956 14 C -0.563 4.563 15 H 0.066 0.934 16 C -0.185 4.185 17 N -0.560 5.560 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.202 1.202 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.065 0.935 25 H 0.225 0.775 26 H 0.175 0.825 27 H 0.216 0.784 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.570 -3.603 11.124 11.798 hybrid contribution 0.860 0.660 -0.403 1.157 sum 2.430 -2.943 10.722 11.381 Atomic orbital electron populations 1.20103 0.88730 1.02087 1.01762 1.20294 0.97791 0.91197 1.15916 1.24049 0.89476 1.00821 0.99350 1.77087 1.21836 0.89132 1.26250 1.46479 1.06651 1.05172 1.59828 0.71348 1.19029 0.85046 0.92620 0.99978 1.17037 1.06384 0.91866 0.96182 1.20093 1.03128 0.92442 0.99219 1.25643 1.07022 1.01660 1.00768 1.84154 1.56371 1.08391 1.14466 1.25269 1.01036 0.97460 0.99374 1.17788 0.95270 0.95350 0.87197 1.21197 1.03510 1.33741 0.97877 0.93359 1.25723 0.97835 0.94752 1.00195 1.70033 1.27882 1.35390 1.22651 0.85684 0.79348 0.78760 0.78404 1.19045 1.20443 1.20219 0.90650 0.91268 0.93532 0.77490 0.82524 0.78386 0.94191 0.97728 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 9.63 71.23 0.69 -1.61 16 2 C -0.24 -8.90 5.42 -19.92 -0.11 -9.01 16 3 C 0.05 1.66 11.92 85.15 1.02 2.67 16 4 N -0.32 -11.84 12.68 -57.23 -0.73 -12.57 16 5 N -0.47 -16.98 7.43 -48.61 -0.36 -17.34 16 6 H 0.44 13.61 8.96 -213.34 -1.91 11.69 16 7 C 0.16 6.23 6.21 40.67 0.25 6.49 16 8 C -0.10 -3.73 5.35 -21.20 -0.11 -3.85 16 9 C -0.12 -3.43 10.01 21.40 0.21 -3.21 16 10 C -0.22 -5.62 11.18 66.66 0.75 -4.87 16 11 S 0.10 3.39 23.31 -56.49 -1.32 2.08 16 12 C -0.11 -4.67 5.25 24.88 0.13 -4.54 16 13 C 0.08 4.22 4.65 29.10 0.14 4.36 16 14 C -0.52 -29.33 9.09 25.60 0.23 -29.10 16 15 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 16 C 0.01 0.80 5.46 84.66 0.46 1.27 16 17 N -0.92 -54.38 13.29 21.45 0.28 -54.10 16 18 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.05 1.76 5.67 -2.39 -0.01 1.74 16 25 H 0.21 5.46 8.06 -2.91 -0.02 5.43 16 26 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 27 H 0.20 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.04 2.17 5.13 -2.38 -0.01 2.16 16 29 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -65.60 276.16 2.82 -62.78 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -0.74 Total: 14.00 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 3.65 Total: -41.41 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -0.80 Total: -84.01 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.32 Total: 2.08 kcal Total: -65.60 2.82 -62.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074109198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.563 kcal (2) G-P(sol) polarization free energy of solvation -65.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds