Wall clock time and date at job start Mon Mar 30 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33896 * 125.92013 * 2 1 4 4 C 1.34604 * 111.02599 * 179.97438 * 3 2 1 5 5 C 1.47745 * 125.29866 * 179.97438 * 4 3 2 6 6 C 1.39559 * 122.82548 * 130.00674 * 5 4 3 7 7 C 1.32957 * 114.92970 * 180.02562 * 6 5 4 8 8 S 1.75799 * 110.01649 * 0.02562 * 7 6 5 9 9 C 1.34911 * 122.83186 * 310.03305 * 5 4 3 10 10 C 1.50707 * 125.24330 * 359.97438 * 9 5 4 11 11 C 1.35559 * 109.39649 * 0.24848 * 4 3 2 12 12 C 1.39230 * 125.92212 * 179.97438 * 2 1 3 13 13 C 1.41445 * 127.28660 * 0.02578 * 12 2 1 14 14 H 1.07993 * 120.00222 * 0.02562 * 13 12 2 15 15 C 1.39539 * 119.99741 * 180.02562 * 13 12 2 16 16 N 1.31113 * 119.99999 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00084 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47411 * 89.99564 * 17 15 13 19 19 H 1.48500 * 109.47315 * 209.99751 * 17 15 13 20 20 H 1.48500 * 109.47149 * 329.99954 * 17 15 13 21 21 H 1.09004 * 109.47315 * 0.03424 * 1 2 3 22 22 H 1.09003 * 109.46770 * 120.02227 * 1 2 3 23 23 H 1.08996 * 109.47769 * 240.02689 * 1 2 3 24 24 H 1.08008 * 122.53763 * 0.04754 * 6 5 4 25 25 H 1.07999 * 124.99187 * 180.26567 * 7 6 5 26 26 H 1.08997 * 109.46977 * 180.02562 * 10 9 5 27 27 H 1.09006 * 109.46920 * 300.00110 * 10 9 5 28 28 H 1.09001 * 109.46958 * 59.99674 * 10 9 5 29 29 H 1.08003 * 126.99503 * 179.72165 * 11 4 3 30 30 H 0.97004 * 119.99747 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2924 1.0843 0.0000 4 6 3.5933 0.7384 0.0006 5 6 4.7282 1.6842 0.0002 6 6 5.7919 1.5900 0.8988 7 6 6.7281 2.5236 0.7588 8 16 6.3040 3.6086 -0.5577 9 6 4.8235 2.7121 -0.8685 10 6 3.8161 3.0416 -1.9398 11 6 3.6997 -0.6130 -0.0046 12 6 2.3238 -1.1275 0.0005 13 6 1.9152 -2.4816 0.0006 14 1 0.8638 -2.7284 -0.0002 15 6 2.8706 -3.4987 0.0017 16 7 4.1470 -3.1990 0.0021 17 14 2.3311 -5.2870 0.0011 18 1 2.1895 -5.7610 -1.3992 19 1 3.3481 -6.1111 0.7022 20 1 1.0265 -5.4107 0.6997 21 1 -0.3634 1.0277 -0.0006 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3634 -0.5134 0.8902 24 1 5.8502 0.8170 1.6509 25 1 7.6203 2.6014 1.3625 26 1 4.1477 3.9206 -2.4924 27 1 3.7228 2.1972 -2.6229 28 1 2.8493 3.2448 -1.4792 29 1 4.6106 -1.1932 -0.0097 30 1 4.8112 -3.9060 0.0025 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074109237.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:48 Heat of formation + Delta-G solvation = 24.518442 kcal Electronic energy + Delta-G solvation = -15325.259208 eV Core-core repulsion = 12792.124992 eV Total energy + Delta-G solvation = -2533.134217 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.36501 -37.42884 -33.86212 -31.67870 -30.83076 -30.22340 -27.30409 -25.90872 -23.95295 -22.23202 -20.28242 -19.17313 -18.02877 -16.73476 -16.50522 -15.30838 -14.57649 -14.40121 -13.85922 -13.52540 -13.05966 -12.90887 -12.35445 -12.18648 -12.11593 -11.82481 -11.73412 -11.58309 -11.25327 -11.19618 -10.85878 -10.73200 -10.53184 -9.85077 -9.57432 -9.48016 -8.34475 -8.20854 -7.73657 -6.72517 -6.53763 -4.18077 1.28855 1.91822 2.24620 2.77372 3.02449 3.13744 3.17887 3.53931 4.04263 4.18141 4.53192 5.21881 5.44898 5.47855 5.57028 5.95920 5.97690 6.03973 6.26193 6.35785 6.36950 6.58077 6.60554 6.66566 6.83314 6.95337 7.21115 7.28820 7.58910 7.85465 8.08702 8.46810 8.90302 8.98583 9.17045 10.42831 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.006503 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.826796 B = 4304.529260 C = 4985.640832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 C -0.208 4.208 3 O -0.194 6.194 4 C -0.019 4.019 5 C -0.009 4.009 6 C -0.101 4.101 7 C -0.223 4.223 8 S 0.068 5.932 9 C -0.170 4.170 10 C -0.074 4.074 11 C -0.170 4.170 12 C 0.032 3.968 13 C -0.438 4.438 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.823 5.823 17 Si 0.914 3.086 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.144 0.856 25 H 0.162 0.838 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.162 0.838 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 7.983 -0.751 8.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.257 4.257 3 O -0.095 6.095 4 C -0.070 4.070 5 C -0.020 4.020 6 C -0.131 4.131 7 C -0.358 4.358 8 S 0.332 5.668 9 C -0.287 4.287 10 C -0.133 4.133 11 C -0.191 4.191 12 C 0.029 3.971 13 C -0.470 4.470 14 H 0.092 0.908 15 C -0.144 4.144 16 N -0.452 5.452 17 Si 0.740 3.260 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.161 0.839 25 H 0.180 0.820 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.179 0.821 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.907 9.440 -1.379 10.309 hybrid contribution -0.573 -2.350 0.710 2.521 sum 3.335 7.090 -0.669 7.863 Atomic orbital electron populations 1.19538 0.87594 0.99898 1.00789 1.22182 0.91684 0.83671 1.28141 1.83369 1.14820 1.35545 1.75802 1.19386 0.81419 0.92388 1.13762 1.16836 0.94044 0.94872 0.96288 1.20143 0.93244 0.99757 0.99981 1.25186 1.04913 1.01275 1.04429 1.83829 1.18145 1.32844 1.32012 1.24682 1.00014 1.00443 1.03547 1.20248 0.96460 1.01367 0.95190 1.23518 0.99744 0.90446 1.05387 1.19028 0.89851 0.92583 0.95647 1.18767 0.93800 0.89132 1.45302 0.90802 1.25767 0.94541 1.01283 0.92774 1.69781 1.01032 1.34273 1.40122 0.86217 0.79208 0.81684 0.78914 1.19732 1.20458 1.18874 0.93674 0.92703 0.92729 0.83855 0.82027 0.92181 0.90533 0.90265 0.82072 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.44 10.15 36.00 0.37 -0.08 16 2 C -0.21 -5.30 7.48 -33.94 -0.25 -5.55 16 3 O -0.19 -4.86 10.19 5.96 0.06 -4.80 16 4 C -0.02 -0.46 6.33 -36.65 -0.23 -0.69 16 5 C -0.01 -0.18 5.68 -106.70 -0.61 -0.79 16 6 C -0.10 -1.82 9.96 -40.92 -0.41 -2.22 16 7 C -0.22 -3.33 11.18 28.90 0.32 -3.00 16 8 S 0.07 0.99 23.31 -107.50 -2.51 -1.51 16 9 C -0.17 -3.04 6.55 -35.49 -0.23 -3.28 16 10 C -0.07 -1.19 9.69 36.01 0.35 -0.84 16 11 C -0.17 -4.55 9.77 -37.04 -0.36 -4.91 16 12 C 0.03 0.88 6.11 -104.81 -0.64 0.23 16 13 C -0.44 -12.01 9.19 -37.88 -0.35 -12.36 16 14 H 0.07 1.93 7.77 -52.49 -0.41 1.52 16 15 C 0.07 1.81 5.49 -17.37 -0.10 1.71 16 16 N -0.82 -21.88 10.45 55.53 0.58 -21.30 16 17 Si 0.91 19.47 29.56 -169.99 -5.02 14.45 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 21 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.14 2.52 8.06 -52.48 -0.42 2.09 16 25 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.32 7.97 -51.93 -0.41 0.91 16 29 H 0.16 4.43 6.07 -52.48 -0.32 4.12 16 30 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 279.35 15.07 4.21 4.21 Total: -1.00 -29.21 279.35 -8.05 -37.26 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.23 Total: 3.46 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -2.14 Total: -31.78 kcal Atomic # 7 Polarization: -21.88 SS G_CDS: 0.58 Total: -21.30 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: 0.06 Total: -4.80 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.21 -8.05 -37.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074109237.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.781 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds