Wall clock time and date at job start Mon Mar 30 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33896 * 125.92013 * 2 1 4 4 C 1.34604 * 111.02599 * 179.97438 * 3 2 1 5 5 C 1.47745 * 125.29866 * 179.97438 * 4 3 2 6 6 C 1.39559 * 122.82548 * 130.00674 * 5 4 3 7 7 C 1.32957 * 114.92970 * 180.02562 * 6 5 4 8 8 S 1.75799 * 110.01649 * 0.02562 * 7 6 5 9 9 C 1.34911 * 122.83186 * 310.03305 * 5 4 3 10 10 C 1.50707 * 125.24330 * 359.97438 * 9 5 4 11 11 C 1.35559 * 109.39649 * 0.24848 * 4 3 2 12 12 C 1.39230 * 125.92212 * 179.97438 * 2 1 3 13 13 C 1.41445 * 127.28660 * 0.02578 * 12 2 1 14 14 H 1.07993 * 120.00222 * 0.02562 * 13 12 2 15 15 C 1.39539 * 119.99741 * 180.02562 * 13 12 2 16 16 N 1.31113 * 119.99999 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00084 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47411 * 89.99564 * 17 15 13 19 19 H 1.48500 * 109.47315 * 209.99751 * 17 15 13 20 20 H 1.48500 * 109.47149 * 329.99954 * 17 15 13 21 21 H 1.09004 * 109.47315 * 0.03424 * 1 2 3 22 22 H 1.09003 * 109.46770 * 120.02227 * 1 2 3 23 23 H 1.08996 * 109.47769 * 240.02689 * 1 2 3 24 24 H 1.08008 * 122.53763 * 0.04754 * 6 5 4 25 25 H 1.07999 * 124.99187 * 180.26567 * 7 6 5 26 26 H 1.08997 * 109.46977 * 180.02562 * 10 9 5 27 27 H 1.09006 * 109.46920 * 300.00110 * 10 9 5 28 28 H 1.09001 * 109.46958 * 59.99674 * 10 9 5 29 29 H 1.08003 * 126.99503 * 179.72165 * 11 4 3 30 30 H 0.97004 * 119.99747 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2924 1.0843 0.0000 4 6 3.5933 0.7384 0.0006 5 6 4.7282 1.6842 0.0002 6 6 5.7919 1.5900 0.8988 7 6 6.7281 2.5236 0.7588 8 16 6.3040 3.6086 -0.5577 9 6 4.8235 2.7121 -0.8685 10 6 3.8161 3.0416 -1.9398 11 6 3.6997 -0.6130 -0.0046 12 6 2.3238 -1.1275 0.0005 13 6 1.9152 -2.4816 0.0006 14 1 0.8638 -2.7284 -0.0002 15 6 2.8706 -3.4987 0.0017 16 7 4.1470 -3.1990 0.0021 17 14 2.3311 -5.2870 0.0011 18 1 2.1895 -5.7610 -1.3992 19 1 3.3481 -6.1111 0.7022 20 1 1.0265 -5.4107 0.6997 21 1 -0.3634 1.0277 -0.0006 22 1 -0.3633 -0.5142 -0.8898 23 1 -0.3634 -0.5134 0.8902 24 1 5.8502 0.8170 1.6509 25 1 7.6203 2.6014 1.3625 26 1 4.1477 3.9206 -2.4924 27 1 3.7228 2.1972 -2.6229 28 1 2.8493 3.2448 -1.4792 29 1 4.6106 -1.1932 -0.0097 30 1 4.8112 -3.9060 0.0025 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074109237.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:48 Heat of formation + Delta-G solvation = 9.222515 kcal Electronic energy + Delta-G solvation = -15325.922489 eV Core-core repulsion = 12792.124992 eV Total energy + Delta-G solvation = -2533.797498 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.29294 -38.85102 -35.83921 -33.09768 -32.67374 -32.03104 -28.99874 -27.64135 -25.64212 -23.63672 -22.22203 -20.91868 -19.82544 -18.36535 -17.99392 -17.02563 -16.37540 -16.27023 -15.50293 -14.94247 -14.60617 -14.29169 -14.10578 -13.91016 -13.60841 -13.44126 -13.27218 -13.08575 -12.98494 -12.79984 -12.48396 -12.40632 -11.93638 -11.72463 -11.45128 -11.39606 -9.96818 -9.62600 -9.44110 -8.55961 -8.47650 -6.22709 -0.07855 0.62832 0.92457 1.11104 1.36708 1.38871 1.52987 1.81057 2.23664 2.25599 2.74946 3.42828 3.90500 4.16841 4.25984 4.47323 4.62714 4.63215 4.71731 4.92925 4.94070 4.94368 4.99889 5.08020 5.21272 5.27896 5.32080 5.57096 5.64933 5.92320 6.08100 6.43378 6.89640 6.98347 7.15955 8.50129 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.006503 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.826796 B = 4304.529260 C = 4985.640832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 C -0.225 4.225 3 O -0.197 6.197 4 C -0.002 4.002 5 C -0.052 4.052 6 C -0.134 4.134 7 C -0.206 4.206 8 S 0.158 5.842 9 C -0.183 4.183 10 C -0.075 4.075 11 C -0.211 4.211 12 C -0.009 4.009 13 C -0.472 4.472 14 H 0.077 0.923 15 C 0.022 3.978 16 N -0.851 5.851 17 Si 0.991 3.009 18 H -0.265 1.265 19 H -0.271 1.271 20 H -0.258 1.258 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.133 0.867 25 H 0.201 0.799 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 9.248 -1.019 10.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.273 4.273 3 O -0.098 6.098 4 C -0.053 4.053 5 C -0.064 4.064 6 C -0.163 4.163 7 C -0.341 4.341 8 S 0.422 5.578 9 C -0.301 4.301 10 C -0.133 4.133 11 C -0.232 4.232 12 C -0.012 4.012 13 C -0.504 4.504 14 H 0.095 0.905 15 C -0.188 4.188 16 N -0.481 5.481 17 Si 0.812 3.188 18 H -0.190 1.190 19 H -0.195 1.195 20 H -0.182 1.182 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.151 0.849 25 H 0.218 0.782 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.640 10.728 -1.647 11.804 hybrid contribution -0.673 -2.540 0.769 2.738 sum 3.966 8.188 -0.878 9.141 Atomic orbital electron populations 1.19641 0.84455 1.01762 1.01548 1.22975 0.93660 0.83178 1.27530 1.83381 1.15335 1.35644 1.75424 1.19945 0.82017 0.92710 1.10658 1.17005 0.94009 0.96175 0.99240 1.20068 0.94105 1.01467 1.00699 1.25671 1.04733 0.99550 1.04113 1.83532 1.14241 1.30093 1.29970 1.25059 1.02211 0.99972 1.02830 1.20296 0.95969 1.02295 0.94769 1.23419 0.99185 0.91766 1.08860 1.19521 0.90907 0.93793 0.96931 1.19064 0.94379 0.89836 1.47110 0.90528 1.26736 0.94365 1.05894 0.91791 1.69897 1.02114 1.35870 1.40214 0.85066 0.79017 0.75494 0.79213 1.18956 1.19520 1.18155 0.91189 0.91782 0.91950 0.84870 0.78238 0.88563 0.92008 0.91190 0.83675 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.72 10.15 71.23 0.72 0.00 16 2 C -0.22 -11.82 7.48 25.92 0.19 -11.62 16 3 O -0.20 -10.18 10.19 -1.57 -0.02 -10.19 16 4 C 0.00 -0.11 6.33 24.17 0.15 0.04 16 5 C -0.05 -2.18 5.68 -21.21 -0.12 -2.30 16 6 C -0.13 -4.80 9.96 21.42 0.21 -4.59 16 7 C -0.21 -5.55 11.18 66.65 0.75 -4.80 16 8 S 0.16 3.99 23.31 -56.49 -1.32 2.68 16 9 C -0.18 -6.34 6.55 24.92 0.16 -6.17 16 10 C -0.07 -2.32 9.69 71.24 0.69 -1.63 16 11 C -0.21 -12.01 9.77 23.92 0.23 -11.78 16 12 C -0.01 -0.52 6.11 -19.98 -0.12 -0.65 16 13 C -0.47 -26.91 9.19 23.37 0.21 -26.70 16 14 H 0.08 4.13 7.77 -2.91 -0.02 4.11 16 15 C 0.02 1.19 5.49 85.11 0.47 1.65 16 16 N -0.85 -47.15 10.45 21.76 0.23 -46.93 16 17 Si 0.99 40.48 29.56 68.60 2.03 42.51 16 18 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 21 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 22 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 25 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 26 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.07 2.30 7.97 -2.39 -0.02 2.28 16 29 H 0.15 8.60 6.07 -2.91 -0.02 8.59 16 30 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 Total: -1.00 -66.57 279.35 5.63 -60.95 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.15 Total: 19.53 kcal Atomic # 6 Polarization: -72.09 SS G_CDS: 3.56 Total: -68.54 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.23 Total: -46.93 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.02 Total: -10.19 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.32 Total: 2.68 kcal Total: -66.57 5.63 -60.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074109237.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.169 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds