Wall clock time and date at job start Mon Mar 30 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46881 * 2 1 4 4 C 1.50698 * 109.47013 * 120.00163 * 2 1 3 5 5 C 1.34004 * 125.14532 * 120.00405 * 4 2 1 6 6 C 1.47285 * 106.09219 * 180.02562 * 5 4 2 7 7 C 1.41376 * 127.37541 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99890 * 180.02562 * 7 6 5 9 9 C 1.39698 * 120.00275 * 0.02562 * 7 6 5 10 10 N 1.31031 * 119.99799 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00225 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47199 * 90.00137 * 11 9 7 13 13 H 1.48507 * 109.46982 * 210.00109 * 11 9 7 14 14 H 1.48500 * 109.47305 * 330.00078 * 11 9 7 15 15 C 1.38978 * 105.24943 * 359.97438 * 6 5 4 16 16 C 1.50702 * 126.05340 * 179.97438 * 15 6 5 17 17 F 1.39903 * 109.47193 * 89.99332 * 16 15 6 18 18 F 1.39897 * 109.47230 * 209.99739 * 16 15 6 19 19 F 1.39904 * 109.46650 * 329.99734 * 16 15 6 20 20 O 1.33874 * 107.89598 * 359.97438 * 15 6 5 21 21 H 1.08994 * 109.47250 * 299.99499 * 1 2 3 22 22 H 1.08994 * 109.47454 * 60.00156 * 1 2 3 23 23 H 1.09005 * 109.46793 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46856 * 240.00094 * 2 1 3 25 25 H 1.09007 * 109.46843 * 60.00087 * 3 2 1 26 26 H 1.09003 * 109.46987 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47617 * 300.00259 * 3 2 1 28 28 H 1.08005 * 126.95526 * 359.75479 * 5 4 2 29 29 H 0.97001 * 120.00016 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8060 -1.8045 1.2276 6 6 3.0429 -2.1407 2.6419 7 6 3.8035 -3.2176 3.1523 8 1 3.8985 -3.3536 4.2195 9 6 4.4321 -4.1058 2.2763 10 7 4.3172 -3.9406 0.9816 11 14 5.4365 -5.5291 2.9507 12 1 4.5591 -6.7140 3.1278 13 1 6.5281 -5.8591 1.9995 14 1 6.0208 -5.1456 4.2610 15 6 2.3586 -1.1727 3.3673 16 6 2.2880 -1.0748 4.8695 17 9 3.3437 -0.2838 5.3354 18 9 1.0708 -0.4948 5.2423 19 9 2.3842 -2.3551 5.4251 20 8 1.7732 -0.3425 2.4953 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 1.6766 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 3.1769 -2.3353 0.3632 29 1 4.7540 -4.5571 0.3733 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077078565.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:52 Heat of formation + Delta-G solvation = -167.494097 kcal Electronic energy + Delta-G solvation = -18590.937258 eV Core-core repulsion = 15064.867142 eV Total energy + Delta-G solvation = -3526.070117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.06064 -46.62864 -46.56278 -40.57545 -34.94134 -34.13289 -30.84124 -28.84680 -26.79943 -26.43770 -23.94077 -21.15570 -20.44407 -18.84529 -17.64128 -17.47166 -17.22291 -16.20175 -14.99700 -14.61541 -14.46908 -14.03112 -13.51626 -13.47204 -13.08143 -12.84666 -12.78865 -12.71094 -12.60781 -12.58159 -12.12148 -11.84412 -11.40131 -11.36361 -10.94625 -10.82632 -10.66632 -10.59798 -10.09067 -9.72029 -9.62463 -8.08179 -7.32260 -6.85640 -4.58103 2.71289 3.02403 3.07579 3.11577 3.54676 3.86006 3.92818 4.25358 5.11284 5.14421 5.30118 5.32216 5.56339 5.64027 5.76564 5.92096 6.03205 6.16490 6.25012 6.47307 6.59854 6.70925 6.84386 7.00813 7.28892 7.42977 7.85296 8.24224 8.60718 8.65254 8.85667 10.08158 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.010551 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.466449 B = 2653.095052 C = 3897.148573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.009 4.009 3 C -0.144 4.144 4 C -0.007 4.007 5 C -0.212 4.212 6 C 0.101 3.899 7 C -0.431 4.431 8 H 0.088 0.912 9 C 0.074 3.926 10 N -0.798 5.798 11 Si 0.922 3.078 12 H -0.267 1.267 13 H -0.275 1.275 14 H -0.259 1.259 15 C -0.343 4.343 16 C 0.579 3.421 17 F -0.193 7.193 18 F -0.196 7.196 19 F -0.172 7.172 20 O -0.187 6.187 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.165 0.835 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 3.338 -1.621 4.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.057 4.057 5 C -0.232 4.232 6 C 0.097 3.903 7 C -0.461 4.461 8 H 0.106 0.894 9 C -0.143 4.143 10 N -0.424 5.424 11 Si 0.746 3.254 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.183 1.183 15 C -0.391 4.391 16 C 0.526 3.474 17 F -0.175 7.175 18 F -0.178 7.178 19 F -0.153 7.153 20 O -0.089 6.089 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.183 0.817 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.535 3.472 -1.695 4.621 hybrid contribution 0.572 -0.813 0.438 1.087 sum -1.963 2.659 -1.257 3.536 Atomic orbital electron populations 1.21825 0.94715 1.02100 1.01502 1.19614 0.95552 0.95357 0.92245 1.21827 1.01440 0.95383 1.01494 1.21953 1.02055 0.98012 0.83642 1.23216 1.03662 0.97902 0.98419 1.18999 0.90039 0.90775 0.90480 1.19268 1.24776 1.06934 0.95075 0.89384 1.25986 0.95168 0.98717 0.94476 1.69754 1.35242 1.34357 1.03093 0.86063 0.79200 0.80195 0.79895 1.19162 1.20024 1.18305 1.20910 1.25018 1.06185 0.86975 1.16573 0.72529 0.72772 0.85563 1.93154 1.58677 1.75114 1.90558 1.93093 1.46320 1.85145 1.93252 1.93123 1.95863 1.39722 1.86623 1.83239 1.63156 1.48791 1.13719 0.92347 0.92724 0.92422 0.89115 0.92367 0.92413 0.92718 0.81749 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.18 37.16 0.34 -1.84 15 2 C -0.01 -0.16 3.31 -91.77 -0.30 -0.46 15 3 C -0.14 -2.18 9.18 37.16 0.34 -1.84 15 4 C -0.01 -0.15 5.76 -35.80 -0.21 -0.36 15 5 C -0.21 -5.36 9.74 -37.39 -0.36 -5.73 15 6 C 0.10 2.76 6.08 -104.75 -0.64 2.12 15 7 C -0.43 -11.60 8.83 -37.84 -0.33 -11.93 15 8 H 0.09 2.33 6.22 -52.48 -0.33 2.00 15 9 C 0.07 1.84 5.49 -17.35 -0.10 1.75 15 10 N -0.80 -19.82 10.46 55.54 0.58 -19.24 15 11 Si 0.92 18.65 29.56 -169.99 -5.02 13.63 15 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 13 H -0.28 -5.36 7.11 56.52 0.40 -4.96 15 14 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 15 C -0.34 -9.00 6.80 -34.03 -0.23 -9.23 15 16 C 0.58 13.83 3.50 36.01 0.13 13.95 15 17 F -0.19 -4.47 17.30 2.25 0.04 -4.43 15 18 F -0.20 -4.42 17.29 2.25 0.04 -4.38 15 19 F -0.17 -4.05 15.06 2.25 0.03 -4.01 15 20 O -0.19 -4.67 10.51 6.98 0.07 -4.60 15 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.09 1.44 8.09 -51.92 -0.42 1.02 15 25 H 0.06 0.92 8.14 -51.92 -0.42 0.50 15 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 28 H 0.17 4.16 6.09 -52.48 -0.32 3.84 15 29 H 0.28 6.30 8.30 -40.82 -0.34 5.96 15 LS Contribution 266.90 15.07 4.02 4.02 Total: -1.00 -27.70 266.90 -4.34 -32.04 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -2.74 Total: 0.54 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.36 Total: -13.57 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.58 Total: -19.24 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.07 Total: -4.60 kcal Atomic # 9 Polarization: -12.93 SS G_CDS: 0.11 Total: -12.82 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.70 -4.34 -32.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077078565.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.457 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds