Wall clock time and date at job start Mon Mar 30 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46881 * 2 1 4 4 C 1.50698 * 109.47013 * 120.00163 * 2 1 3 5 5 C 1.34004 * 125.14532 * 120.00405 * 4 2 1 6 6 C 1.47285 * 106.09219 * 180.02562 * 5 4 2 7 7 C 1.41376 * 127.37541 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99890 * 180.02562 * 7 6 5 9 9 C 1.39698 * 120.00275 * 0.02562 * 7 6 5 10 10 N 1.31031 * 119.99799 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00225 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47199 * 90.00137 * 11 9 7 13 13 H 1.48507 * 109.46982 * 210.00109 * 11 9 7 14 14 H 1.48500 * 109.47305 * 330.00078 * 11 9 7 15 15 C 1.38978 * 105.24943 * 359.97438 * 6 5 4 16 16 C 1.50702 * 126.05340 * 179.97438 * 15 6 5 17 17 F 1.39903 * 109.47193 * 89.99332 * 16 15 6 18 18 F 1.39897 * 109.47230 * 209.99739 * 16 15 6 19 19 F 1.39904 * 109.46650 * 329.99734 * 16 15 6 20 20 O 1.33874 * 107.89598 * 359.97438 * 15 6 5 21 21 H 1.08994 * 109.47250 * 299.99499 * 1 2 3 22 22 H 1.08994 * 109.47454 * 60.00156 * 1 2 3 23 23 H 1.09005 * 109.46793 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46856 * 240.00094 * 2 1 3 25 25 H 1.09007 * 109.46843 * 60.00087 * 3 2 1 26 26 H 1.09003 * 109.46987 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47617 * 300.00259 * 3 2 1 28 28 H 1.08005 * 126.95526 * 359.75479 * 5 4 2 29 29 H 0.97001 * 120.00016 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8060 -1.8045 1.2276 6 6 3.0429 -2.1407 2.6419 7 6 3.8035 -3.2176 3.1523 8 1 3.8985 -3.3536 4.2195 9 6 4.4321 -4.1058 2.2763 10 7 4.3172 -3.9406 0.9816 11 14 5.4365 -5.5291 2.9507 12 1 4.5591 -6.7140 3.1278 13 1 6.5281 -5.8591 1.9995 14 1 6.0208 -5.1456 4.2610 15 6 2.3586 -1.1727 3.3673 16 6 2.2880 -1.0748 4.8695 17 9 3.3437 -0.2838 5.3354 18 9 1.0708 -0.4948 5.2423 19 9 2.3842 -2.3551 5.4251 20 8 1.7732 -0.3425 2.4953 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 1.6766 1.9563 0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 3.1769 -2.3353 0.3632 29 1 4.7540 -4.5571 0.3733 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077078565.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:52 Heat of formation + Delta-G solvation = -181.796305 kcal Electronic energy + Delta-G solvation = -18591.557448 eV Core-core repulsion = 15064.867142 eV Total energy + Delta-G solvation = -3526.690307 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.94832 -48.50388 -48.44961 -42.47027 -36.36965 -36.03489 -32.78870 -30.66075 -28.38827 -27.99970 -25.75824 -22.75215 -22.37741 -20.64338 -19.51560 -19.36208 -19.11180 -18.15312 -16.66071 -16.34941 -16.21217 -15.50001 -15.34432 -15.31312 -14.96167 -14.71813 -14.67298 -14.45742 -14.30136 -13.95783 -13.90457 -13.22728 -13.07783 -12.98076 -12.64392 -12.33675 -12.09283 -11.94753 -11.84115 -11.54432 -11.42062 -10.05086 -9.20701 -8.72700 -6.59456 0.87542 1.37302 1.44231 1.51654 1.66611 2.05812 2.17222 2.40168 3.15145 3.33493 3.59026 3.72137 3.98799 4.26583 4.31365 4.63184 4.81239 4.81470 4.96475 4.98865 5.03571 5.15389 5.36451 5.38407 5.40446 5.54850 5.92450 6.26043 6.63200 6.69583 6.90209 8.22989 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.010551 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.466449 B = 2653.095052 C = 3897.148573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.013 4.013 3 C -0.139 4.139 4 C 0.012 3.988 5 C -0.248 4.248 6 C 0.071 3.929 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.035 3.965 10 N -0.814 5.814 11 Si 0.993 3.007 12 H -0.259 1.259 13 H -0.258 1.258 14 H -0.261 1.261 15 C -0.375 4.375 16 C 0.585 3.415 17 F -0.190 7.190 18 F -0.188 7.188 19 F -0.172 7.172 20 O -0.194 6.194 21 H 0.047 0.953 22 H 0.094 0.906 23 H 0.047 0.953 24 H 0.106 0.894 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.161 0.839 29 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 3.297 -2.675 4.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.196 4.196 4 C -0.038 4.038 5 C -0.269 4.269 6 C 0.067 3.933 7 C -0.494 4.494 8 H 0.100 0.900 9 C -0.181 4.181 10 N -0.440 5.440 11 Si 0.813 3.187 12 H -0.183 1.183 13 H -0.182 1.182 14 H -0.185 1.185 15 C -0.423 4.423 16 C 0.531 3.469 17 F -0.172 7.172 18 F -0.170 7.170 19 F -0.153 7.153 20 O -0.097 6.097 21 H 0.066 0.934 22 H 0.113 0.887 23 H 0.067 0.933 24 H 0.124 0.876 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.178 0.822 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.533 3.451 -2.759 5.093 hybrid contribution 0.546 -0.772 0.686 1.168 sum -1.987 2.679 -2.073 3.927 Atomic orbital electron populations 1.21797 0.92786 1.02016 1.02992 1.19947 0.97139 0.96284 0.89770 1.21800 1.00866 0.93944 1.02991 1.22942 0.99593 0.96949 0.84348 1.23231 1.06186 0.99803 0.97650 1.19478 0.90527 0.91409 0.91876 1.19518 1.26302 1.08190 0.95343 0.89976 1.26875 0.95734 1.00856 0.94638 1.69778 1.35020 1.35151 1.04010 0.85022 0.77858 0.76576 0.79246 1.18340 1.18239 1.18537 1.21245 1.26108 1.06815 0.88110 1.16356 0.72860 0.72879 0.84819 1.93149 1.58599 1.74998 1.90418 1.93099 1.45777 1.84986 1.93092 1.93114 1.95894 1.39812 1.86500 1.83241 1.63165 1.48778 1.14516 0.93351 0.88721 0.93338 0.87563 0.93359 0.93343 0.88713 0.82170 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.18 71.98 0.66 -3.21 15 2 C -0.01 -0.43 3.31 -11.54 -0.04 -0.47 15 3 C -0.14 -3.87 9.18 71.98 0.66 -3.21 15 4 C 0.01 0.54 5.76 24.72 0.14 0.68 15 5 C -0.25 -12.85 9.74 23.69 0.23 -12.62 15 6 C 0.07 3.99 6.08 -19.95 -0.12 3.86 15 7 C -0.46 -25.57 8.83 23.40 0.21 -25.36 15 8 H 0.08 4.45 6.22 -2.91 -0.02 4.43 15 9 C 0.04 1.75 5.49 85.17 0.47 2.22 15 10 N -0.81 -40.41 10.46 21.79 0.23 -40.19 15 11 Si 0.99 37.67 29.56 68.60 2.03 39.70 15 12 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 13 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 14 H -0.26 -9.93 7.11 99.48 0.71 -9.23 15 15 C -0.38 -20.12 6.80 25.86 0.18 -19.94 15 16 C 0.58 28.30 3.50 71.24 0.25 28.55 15 17 F -0.19 -8.87 17.30 44.97 0.78 -8.09 15 18 F -0.19 -8.46 17.29 44.97 0.78 -7.68 15 19 F -0.17 -8.22 15.06 44.97 0.68 -7.55 15 20 O -0.19 -9.85 10.51 2.05 0.02 -9.83 15 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.05 1.42 8.14 -2.38 -0.02 1.40 15 24 H 0.11 3.14 8.09 -2.38 -0.02 3.12 15 25 H 0.05 1.44 8.14 -2.38 -0.02 1.42 15 26 H 0.05 1.42 8.14 -2.39 -0.02 1.41 15 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 28 H 0.16 8.28 6.09 -2.91 -0.02 8.27 15 29 H 0.29 12.92 8.30 -92.71 -0.77 12.15 15 Total: -1.00 -60.37 266.90 8.32 -52.05 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.18 Total: 11.07 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 2.63 Total: -29.49 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.23 Total: -40.19 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.02 Total: -9.83 kcal Atomic # 9 Polarization: -25.55 SS G_CDS: 2.23 Total: -23.32 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -60.37 8.32 -52.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077078565.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.746 kcal (2) G-P(sol) polarization free energy of solvation -60.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds