Wall clock time and date at job start Mon Mar 30 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 C 1.50704 * 109.47379 * 180.02562 * 3 2 1 5 5 O 1.33872 * 126.05038 * 270.02953 * 4 3 2 6 6 C 1.34259 * 111.05528 * 179.97438 * 5 4 3 7 7 C 1.50701 * 125.14808 * 180.02562 * 6 5 4 8 8 F 1.39894 * 109.47167 * 269.97896 * 7 6 5 9 9 F 1.39899 * 109.47059 * 29.98131 * 7 6 5 10 10 F 1.39899 * 109.46846 * 149.97545 * 7 6 5 11 11 C 1.34004 * 109.70377 * 0.02562 * 6 5 4 12 12 C 1.38976 * 126.05096 * 89.71658 * 4 3 2 13 13 C 1.41375 * 127.37545 * 0.02562 * 12 4 3 14 14 H 1.08000 * 119.99911 * 342.58186 * 13 12 4 15 15 C 1.39698 * 120.00092 * 162.57733 * 13 12 4 16 16 N 1.31031 * 120.00004 * 164.98672 * 15 13 12 17 17 Si 1.86796 * 119.99772 * 344.99153 * 15 13 12 18 18 H 1.48499 * 109.47454 * 89.94428 * 17 15 13 19 19 H 1.48505 * 109.46978 * 209.94493 * 17 15 13 20 20 H 1.48498 * 109.47169 * 329.93924 * 17 15 13 21 21 H 1.09006 * 109.46917 * 299.99720 * 1 2 3 22 22 H 1.09000 * 109.46809 * 59.99699 * 1 2 3 23 23 H 1.08992 * 109.46798 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47287 * 120.00068 * 2 1 3 25 25 H 1.08999 * 109.46774 * 240.00634 * 2 1 3 26 26 H 1.08994 * 109.47486 * 300.00792 * 3 2 1 27 27 H 1.09006 * 109.46983 * 60.00321 * 3 2 1 28 28 H 1.08004 * 126.95429 * 180.02562 * 11 6 5 29 29 H 0.96994 * 119.99775 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4426 -0.0006 5 8 4.3354 1.4419 1.0814 6 6 5.6321 1.4416 0.7335 7 6 6.7893 1.4403 1.6988 8 9 7.1483 2.7588 1.9982 9 9 6.4153 0.7803 2.8743 10 9 7.8786 0.7803 1.1199 11 6 5.7415 1.4427 -0.6021 12 6 4.3645 1.4372 -1.1246 13 6 3.9606 1.4312 -2.4794 14 1 2.9511 1.1503 -2.7407 15 6 4.8674 1.7886 -3.4802 16 7 4.6047 1.5083 -4.7329 17 14 6.4546 2.6659 -3.0324 18 1 7.5180 1.6629 -2.7710 19 1 6.8684 3.5447 -4.1558 20 1 6.2392 3.4879 -1.8146 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0276 -0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9564 -0.8898 27 1 1.6767 1.9563 0.8901 28 1 6.6547 1.4424 -1.1787 29 1 5.2341 1.7568 -5.4278 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077080634.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:54 Heat of formation + Delta-G solvation = -175.608128 kcal Electronic energy + Delta-G solvation = -18346.668371 eV Core-core repulsion = 14820.246403 eV Total energy + Delta-G solvation = -3526.421967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.34410 -48.87810 -48.81447 -42.94958 -36.26636 -35.61874 -33.67909 -31.98221 -28.80252 -27.71505 -25.17597 -22.99397 -22.47007 -20.94625 -19.99337 -19.74271 -19.49879 -18.46082 -16.83865 -16.75139 -16.38663 -15.80810 -15.66820 -15.64998 -15.27336 -15.22315 -14.98431 -14.97949 -14.69001 -14.11565 -13.75565 -13.60456 -13.40694 -12.87258 -12.66751 -12.42233 -12.06773 -12.05055 -11.70173 -11.45141 -11.32152 -10.47931 -9.51042 -8.85077 -6.41911 0.48274 1.05110 1.10122 1.26886 1.38872 1.63483 2.01332 2.07633 2.72734 3.08853 3.20976 3.27483 3.94220 4.11496 4.27905 4.29936 4.47771 4.68969 4.84685 4.87839 5.04689 5.07550 5.15149 5.31939 5.38620 5.51437 5.66248 6.09530 6.32595 6.61959 6.82289 8.24388 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.011943 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.712348 B = 2343.932624 C = 3950.419801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.002 4.002 4 C -0.144 4.144 5 O -0.164 6.164 6 C -0.129 4.129 7 C 0.570 3.430 8 F -0.168 7.168 9 F -0.167 7.167 10 F -0.160 7.160 11 C -0.219 4.219 12 C -0.012 4.012 13 C -0.456 4.456 14 H 0.070 0.930 15 C 0.051 3.949 16 N -0.856 5.856 17 Si 0.943 3.057 18 H -0.256 1.256 19 H -0.273 1.273 20 H -0.253 1.253 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.144 0.856 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 0.166 9.492 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.039 4.039 4 C -0.194 4.194 5 O -0.063 6.063 6 C -0.180 4.180 7 C 0.516 3.484 8 F -0.149 7.149 9 F -0.148 7.148 10 F -0.142 7.142 11 C -0.239 4.239 12 C -0.015 4.015 13 C -0.487 4.487 14 H 0.088 0.912 15 C -0.162 4.162 16 N -0.484 5.484 17 Si 0.767 3.233 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.177 1.177 21 H 0.087 0.913 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.161 0.839 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.532 0.158 9.523 9.539 hybrid contribution 1.060 0.217 -0.433 1.166 sum 1.593 0.375 9.090 9.236 Atomic orbital electron populations 1.21719 0.93463 1.02400 1.02385 1.21508 0.97167 0.95607 1.01239 1.19799 0.82948 0.98160 1.03029 1.23173 0.93510 1.20827 0.81851 1.83383 1.13347 1.73584 1.35980 1.21300 0.84786 1.18712 0.93248 1.16588 0.80031 0.74153 0.77665 1.93232 1.92448 1.35825 1.93382 1.93210 1.91285 1.80950 1.49400 1.93215 1.55450 1.80944 1.84562 1.22771 0.99221 1.08682 0.93241 1.19300 0.89125 0.98929 0.94160 1.18549 0.99531 1.42403 0.88184 0.91171 1.26500 1.01708 0.93759 0.94276 1.69751 1.38528 1.38195 1.01922 0.85955 0.78658 0.79820 0.78848 1.18217 1.19912 1.17734 0.91315 0.92682 0.91719 0.92288 0.93856 0.90183 0.89702 0.83904 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 15 2 C -0.12 -3.80 5.92 30.60 0.18 -3.62 15 3 C 0.00 -0.08 5.59 29.85 0.17 0.09 15 4 C -0.14 -6.46 6.74 25.86 0.17 -6.29 15 5 O -0.16 -7.17 10.49 2.03 0.02 -7.15 15 6 C -0.13 -5.49 6.59 24.72 0.16 -5.33 15 7 C 0.57 20.11 3.53 71.24 0.25 20.36 15 8 F -0.17 -5.64 17.30 44.97 0.78 -4.87 15 9 F -0.17 -5.53 17.28 44.97 0.78 -4.75 15 10 F -0.16 -5.41 16.98 44.97 0.76 -4.65 15 11 C -0.22 -10.20 7.77 23.69 0.18 -10.01 15 12 C -0.01 -0.62 5.67 -19.95 -0.11 -0.73 15 13 C -0.46 -24.73 9.58 23.40 0.22 -24.51 15 14 H 0.07 4.01 8.01 -2.91 -0.02 3.99 15 15 C 0.05 2.68 5.51 85.17 0.47 3.15 15 16 N -0.86 -46.30 13.94 21.79 0.30 -46.00 15 17 Si 0.94 41.65 24.47 68.60 1.68 43.33 15 18 H -0.26 -10.74 6.63 99.48 0.66 -10.08 15 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 20 H -0.25 -11.33 6.51 99.48 0.65 -10.69 15 21 H 0.07 1.45 8.14 -2.38 -0.02 1.43 15 22 H 0.05 1.35 8.14 -2.39 -0.02 1.33 15 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 15 26 H 0.08 2.99 7.94 -2.39 -0.02 2.97 15 27 H 0.08 2.62 8.14 -2.38 -0.02 2.60 15 28 H 0.14 6.44 4.29 -2.91 -0.01 6.43 15 29 H 0.29 14.28 8.30 -92.71 -0.77 13.51 15 Total: -1.00 -55.90 264.91 7.81 -48.09 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.07 Total: 5.68 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 2.41 Total: -29.70 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.30 Total: -46.00 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.02 Total: -7.15 kcal Atomic # 9 Polarization: -16.58 SS G_CDS: 2.32 Total: -14.26 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.68 Total: 43.33 kcal Total: -55.90 7.81 -48.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077080634.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.520 kcal (2) G-P(sol) polarization free energy of solvation -55.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds