Wall clock time and date at job start Mon Mar 30 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99818 * 2 1 4 4 C 1.50694 * 109.47251 * 66.04882 * 3 2 1 5 5 H 1.08003 * 120.00046 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00398 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99871 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00326 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47119 * 59.99568 * 8 6 4 10 10 H 1.48500 * 109.47444 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47002 * 299.99879 * 8 6 4 12 12 C 1.38578 * 110.99741 * 236.05015 * 2 1 3 13 13 S 1.71475 * 126.76553 * 123.97948 * 12 2 1 14 14 N 1.68824 * 97.06633 * 179.97438 * 13 12 2 15 15 C 1.32473 * 109.20866 * 359.97438 * 14 13 12 16 16 C 1.42663 * 127.45620 * 179.97438 * 15 14 13 17 17 C 1.35205 * 120.26462 * 180.02562 * 16 15 14 18 18 C 1.39554 * 121.59996 * 0.02562 * 17 16 15 19 19 C 1.35403 * 121.33740 * 359.97337 * 18 17 16 20 20 C 1.39935 * 126.76563 * 303.94625 * 12 2 1 21 21 H 1.09000 * 109.46644 * 183.95591 * 1 2 3 22 22 H 1.08996 * 109.47037 * 303.94669 * 1 2 3 23 23 H 1.09001 * 109.47447 * 63.95288 * 1 2 3 24 24 H 1.09000 * 109.47152 * 186.05517 * 3 2 1 25 25 H 1.09004 * 109.46870 * 306.05013 * 3 2 1 26 26 H 0.96999 * 120.00414 * 180.02562 * 7 6 4 27 27 H 1.07996 * 119.87123 * 0.04148 * 16 15 14 28 28 H 1.07998 * 119.20177 * 179.71536 * 17 16 15 29 29 H 1.07995 * 119.32756 * 180.02562 * 18 17 16 30 30 H 1.08002 * 119.91375 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3495 1.5285 7 7 2.7118 4.0019 0.6150 8 14 1.5818 4.1872 3.1377 9 1 2.1735 3.4302 4.2700 10 1 2.1140 5.5736 3.1378 11 1 0.1045 4.2236 3.2848 12 6 1.9656 -0.7225 -1.0732 13 16 3.0501 -0.1591 -2.2760 14 7 3.1397 -1.5928 -3.1629 15 6 2.3743 -2.5090 -2.5888 16 6 2.1642 -3.8545 -3.0141 17 6 1.3452 -4.6706 -2.3133 18 6 0.6843 -4.2327 -1.1648 19 6 0.8368 -2.9689 -0.7033 20 6 1.6813 -2.0559 -1.3886 21 1 -0.3632 -1.0252 0.0709 22 1 -0.3633 0.5738 0.8525 23 1 -0.3634 0.4513 -0.9233 24 1 3.0797 1.3445 -0.1084 25 1 1.5610 1.9274 -0.8309 26 1 2.9864 4.9181 0.7769 27 1 2.6615 -4.2227 -3.8992 28 1 1.1949 -5.6846 -2.6533 29 1 0.0388 -4.9159 -0.6330 30 1 0.3139 -2.6542 0.1877 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090868885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:05 Heat of formation + Delta-G solvation = 60.290843 kcal Electronic energy + Delta-G solvation = -15246.450737 eV Core-core repulsion = 12747.160479 eV Total energy + Delta-G solvation = -2499.290258 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51332 -37.34793 -34.65863 -32.95187 -31.25152 -28.46202 -27.66044 -26.50354 -24.48668 -22.13674 -21.08285 -20.21851 -17.84315 -16.97159 -16.03120 -15.85278 -14.86044 -14.73880 -14.40906 -14.11349 -13.86801 -13.46098 -13.10973 -12.34944 -11.93712 -11.63816 -11.53203 -11.21236 -11.15764 -11.08082 -10.94640 -10.61366 -10.40600 -10.10024 -9.84863 -9.47043 -8.74654 -8.46672 -8.12493 -7.02698 -6.29558 -4.35461 0.40543 1.75803 1.99128 2.22184 2.37339 3.19478 3.24950 3.26479 3.98110 4.09593 4.34908 4.98376 5.05916 5.12452 5.20557 5.43449 5.49337 5.62674 5.79851 5.82668 6.19252 6.29102 6.39096 6.51625 6.70218 6.72508 6.77843 6.81364 7.27764 7.34247 7.37690 7.73319 7.99824 8.68208 9.30464 10.80929 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.039206 B = 0.006081 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.011431 B = 4603.577776 C = 5206.831216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.432 5.432 3 C 0.176 3.824 4 C -0.526 4.526 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.906 3.094 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.060 3.940 13 S 0.322 5.678 14 N -0.538 5.538 15 C 0.167 3.833 16 C -0.121 4.121 17 C -0.069 4.069 18 C -0.178 4.178 19 C -0.024 4.024 20 C -0.214 4.214 21 H 0.066 0.934 22 H 0.095 0.905 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.021 0.979 26 H 0.268 0.732 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -11.372 -3.558 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.144 5.144 3 C 0.052 3.948 4 C -0.564 4.564 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.733 3.267 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 C -0.177 4.177 13 S 0.477 5.523 14 N -0.366 5.366 15 C 0.005 3.995 16 C -0.145 4.145 17 C -0.094 4.094 18 C -0.198 4.198 19 C -0.046 4.046 20 C -0.230 4.230 21 H 0.085 0.915 22 H 0.114 0.886 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.718 -9.979 -4.367 11.227 hybrid contribution -1.376 -0.270 1.299 1.911 sum -4.094 -10.249 -3.068 11.455 Atomic orbital electron populations 1.22582 0.83575 1.02167 1.02909 1.58218 1.09146 1.18066 1.29005 1.20312 0.96592 0.78674 0.99239 1.20885 1.37006 0.97426 1.01056 0.91270 1.24971 0.94641 0.97045 0.97410 1.69923 1.36822 1.11851 1.34075 0.86423 0.78857 0.78408 0.83001 1.19934 1.21037 1.19991 1.25588 1.01912 0.97078 0.93078 1.84140 1.41440 1.17257 1.09478 1.76769 1.30885 1.02636 1.26331 1.20584 0.92708 0.94706 0.91496 1.20362 1.02291 0.90125 1.01679 1.20528 0.95224 0.98996 0.94618 1.20387 1.04173 0.96402 0.98869 1.20644 0.94329 0.92306 0.97351 1.19678 1.08962 0.92698 1.01654 0.91502 0.88595 0.94322 0.93568 0.96121 0.92241 0.85669 0.86026 0.86292 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.17 60.07 0.55 1.15 16 2 N -0.43 -8.90 4.82 -181.41 -0.87 -9.78 16 3 C 0.18 4.21 3.88 -4.98 -0.02 4.20 16 4 C -0.53 -13.55 8.46 -34.44 -0.29 -13.84 16 5 H 0.07 1.73 7.12 -52.48 -0.37 1.36 16 6 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 7 N -0.89 -24.63 13.29 55.43 0.74 -23.89 16 8 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.06 1.18 6.07 -13.86 -0.08 1.10 16 13 S 0.32 6.25 21.77 -107.50 -2.34 3.91 16 14 N -0.54 -10.45 12.02 33.32 0.40 -10.05 16 15 C 0.17 3.02 6.99 -82.86 -0.58 2.44 16 16 C -0.12 -1.77 10.09 -38.96 -0.39 -2.17 16 17 C -0.07 -0.86 9.88 -40.17 -0.40 -1.25 16 18 C -0.18 -2.26 9.91 -40.10 -0.40 -2.66 16 19 C -0.02 -0.36 9.13 -39.15 -0.36 -0.72 16 20 C -0.21 -3.86 5.85 -104.80 -0.61 -4.47 16 21 H 0.07 0.99 5.26 -51.93 -0.27 0.71 16 22 H 0.10 1.69 6.76 -51.93 -0.35 1.34 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 1.19 7.32 -51.93 -0.38 0.81 16 25 H 0.02 0.53 8.12 -51.93 -0.42 0.11 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 27 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.72 6.31 -52.49 -0.33 1.39 16 LS Contribution 269.16 15.07 4.06 4.06 Total: -1.00 -28.49 269.16 -8.68 -37.17 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -2.96 Total: -1.92 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -2.68 Total: -14.67 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.26 Total: -43.72 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -2.34 Total: 3.91 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.49 -8.68 -37.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090868885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.458 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds