Wall clock time and date at job start Mon Mar 30 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99818 * 2 1 4 4 C 1.50694 * 109.47251 * 66.04882 * 3 2 1 5 5 H 1.08003 * 120.00046 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00398 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99871 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00326 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47119 * 59.99568 * 8 6 4 10 10 H 1.48500 * 109.47444 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47002 * 299.99879 * 8 6 4 12 12 C 1.38578 * 110.99741 * 236.05015 * 2 1 3 13 13 S 1.71475 * 126.76553 * 123.97948 * 12 2 1 14 14 N 1.68824 * 97.06633 * 179.97438 * 13 12 2 15 15 C 1.32473 * 109.20866 * 359.97438 * 14 13 12 16 16 C 1.42663 * 127.45620 * 179.97438 * 15 14 13 17 17 C 1.35205 * 120.26462 * 180.02562 * 16 15 14 18 18 C 1.39554 * 121.59996 * 0.02562 * 17 16 15 19 19 C 1.35403 * 121.33740 * 359.97337 * 18 17 16 20 20 C 1.39935 * 126.76563 * 303.94625 * 12 2 1 21 21 H 1.09000 * 109.46644 * 183.95591 * 1 2 3 22 22 H 1.08996 * 109.47037 * 303.94669 * 1 2 3 23 23 H 1.09001 * 109.47447 * 63.95288 * 1 2 3 24 24 H 1.09000 * 109.47152 * 186.05517 * 3 2 1 25 25 H 1.09004 * 109.46870 * 306.05013 * 3 2 1 26 26 H 0.96999 * 120.00414 * 180.02562 * 7 6 4 27 27 H 1.07996 * 119.87123 * 0.04148 * 16 15 14 28 28 H 1.07998 * 119.20177 * 179.71536 * 17 16 15 29 29 H 1.07995 * 119.32756 * 180.02562 * 18 17 16 30 30 H 1.08002 * 119.91375 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3495 1.5285 7 7 2.7118 4.0019 0.6150 8 14 1.5818 4.1872 3.1377 9 1 2.1735 3.4302 4.2700 10 1 2.1140 5.5736 3.1378 11 1 0.1045 4.2236 3.2848 12 6 1.9656 -0.7225 -1.0732 13 16 3.0501 -0.1591 -2.2760 14 7 3.1397 -1.5928 -3.1629 15 6 2.3743 -2.5090 -2.5888 16 6 2.1642 -3.8545 -3.0141 17 6 1.3452 -4.6706 -2.3133 18 6 0.6843 -4.2327 -1.1648 19 6 0.8368 -2.9689 -0.7033 20 6 1.6813 -2.0559 -1.3886 21 1 -0.3632 -1.0252 0.0709 22 1 -0.3633 0.5738 0.8525 23 1 -0.3634 0.4513 -0.9233 24 1 3.0797 1.3445 -0.1084 25 1 1.5610 1.9274 -0.8309 26 1 2.9864 4.9181 0.7769 27 1 2.6615 -4.2227 -3.8992 28 1 1.1949 -5.6846 -2.6533 29 1 0.0388 -4.9159 -0.6330 30 1 0.3139 -2.6542 0.1877 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090868885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:05 Heat of formation + Delta-G solvation = 42.828125 kcal Electronic energy + Delta-G solvation = -15247.207977 eV Core-core repulsion = 12747.160479 eV Total energy + Delta-G solvation = -2500.047498 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83475 -38.85902 -35.92589 -34.88522 -32.57906 -29.88116 -29.35036 -27.90872 -26.01520 -23.82487 -22.34240 -21.55882 -19.27991 -18.76770 -17.43429 -17.33848 -16.50632 -16.32220 -15.61987 -15.55076 -15.25354 -14.92883 -14.44261 -14.17542 -13.51414 -13.01294 -12.89847 -12.68848 -12.64855 -12.52694 -12.37618 -12.26859 -12.05910 -11.71371 -11.43325 -11.04873 -10.69380 -9.91727 -9.52438 -8.43380 -8.29168 -6.43258 -0.93841 0.31201 0.75376 0.94237 0.97353 1.42723 1.45180 1.53266 2.32636 2.69005 2.83726 3.04735 3.71408 3.85263 4.14431 4.20365 4.28252 4.39346 4.53638 4.62157 4.78979 4.82899 4.96761 5.12777 5.24194 5.36834 5.49399 5.63283 5.64509 5.69803 5.79465 6.14583 6.15419 6.67577 7.27087 8.81043 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.039206 B = 0.006081 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.011431 B = 4603.577776 C = 5206.831216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.439 5.439 3 C 0.192 3.808 4 C -0.537 4.537 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.975 3.025 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.262 1.262 12 C 0.038 3.962 13 S 0.278 5.722 14 N -0.551 5.551 15 C 0.150 3.850 16 C -0.140 4.140 17 C -0.048 4.048 18 C -0.150 4.150 19 C -0.053 4.053 20 C -0.210 4.210 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.033 0.967 24 H 0.019 0.981 25 H -0.003 1.003 26 H 0.269 0.731 27 H 0.142 0.858 28 H 0.170 0.830 29 H 0.162 0.838 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 -14.424 -2.684 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.152 5.152 3 C 0.067 3.933 4 C -0.575 4.575 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.799 3.201 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.187 1.187 12 C -0.197 4.197 13 S 0.434 5.566 14 N -0.380 5.380 15 C -0.011 4.011 16 C -0.164 4.164 17 C -0.072 4.072 18 C -0.170 4.170 19 C -0.075 4.075 20 C -0.226 4.226 21 H 0.116 0.884 22 H 0.109 0.891 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.014 0.986 26 H 0.078 0.922 27 H 0.160 0.840 28 H 0.188 0.812 29 H 0.179 0.821 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.476 -13.051 -3.503 14.235 hybrid contribution -0.890 0.381 0.915 1.332 sum -5.366 -12.670 -2.588 14.000 Atomic orbital electron populations 1.22664 0.82060 1.03980 1.02436 1.58266 1.10628 1.16010 1.30340 1.19888 0.94901 0.80642 0.97841 1.21243 1.36716 0.97824 1.01681 0.90657 1.25891 0.94434 0.97783 1.00828 1.70059 1.38134 1.12187 1.36182 0.85348 0.79118 0.77061 0.78613 1.19396 1.20974 1.18664 1.25565 1.02804 0.97865 0.93515 1.84152 1.42599 1.18730 1.11164 1.76813 1.31908 1.02618 1.26645 1.21225 0.92328 0.96001 0.91559 1.20724 1.03772 0.88734 1.03133 1.21109 0.92400 1.00515 0.93161 1.20966 1.02393 0.95603 0.98032 1.20882 0.95191 0.93105 0.98369 1.20003 1.08828 0.92237 1.01580 0.88442 0.89053 0.94779 0.96260 0.98565 0.92221 0.84013 0.81249 0.82091 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.20 9.17 127.69 1.17 2.37 16 2 N -0.44 -18.62 4.82 -727.86 -3.51 -22.12 16 3 C 0.19 9.74 3.88 85.55 0.33 10.07 16 4 C -0.54 -28.36 8.46 25.60 0.22 -28.14 16 5 H 0.08 3.79 7.12 -2.91 -0.02 3.77 16 6 C 0.01 0.57 5.46 84.66 0.46 1.03 16 7 N -0.93 -53.12 13.29 21.45 0.28 -52.83 16 8 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 12 C 0.04 1.54 6.07 84.04 0.51 2.05 16 13 S 0.28 11.51 21.77 -56.49 -1.23 10.28 16 14 N -0.55 -21.92 12.02 -48.50 -0.58 -22.50 16 15 C 0.15 5.32 6.99 42.11 0.29 5.61 16 16 C -0.14 -3.67 10.09 22.68 0.23 -3.44 16 17 C -0.05 -0.91 9.88 21.89 0.22 -0.70 16 18 C -0.15 -2.99 9.91 21.93 0.22 -2.77 16 19 C -0.05 -1.45 9.13 22.55 0.21 -1.24 16 20 C -0.21 -7.41 5.85 -19.98 -0.12 -7.53 16 21 H 0.10 2.73 5.26 -2.39 -0.01 2.72 16 22 H 0.09 3.22 6.76 -2.39 -0.02 3.21 16 23 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.02 1.07 7.32 -2.39 -0.02 1.05 16 25 H 0.00 -0.18 8.12 -2.39 -0.02 -0.20 16 26 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 29 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.14 3.33 6.31 -2.91 -0.02 3.31 16 Total: -1.00 -64.13 269.16 1.88 -62.24 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.16 Total: 3.95 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 3.74 Total: -22.68 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -3.81 Total: -97.46 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 11.51 SS G_CDS: -1.23 Total: 10.28 kcal Total: -64.13 1.88 -62.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090868885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.070 kcal (2) G-P(sol) polarization free energy of solvation -64.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds