Wall clock time and date at job start Mon Mar 30 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99828 * 2 1 4 4 C 1.52995 * 109.28882 * 66.22968 * 3 2 1 5 5 F 1.39907 * 109.46775 * 186.26264 * 4 3 2 6 6 F 1.39898 * 109.47539 * 306.25341 * 4 3 2 7 7 F 1.39892 * 109.47420 * 66.26162 * 4 3 2 8 8 C 1.50405 * 109.38078 * 306.66859 * 3 2 1 9 9 C 1.32718 * 120.16405 * 274.68940 * 8 3 2 10 10 C 1.47068 * 119.94460 * 358.77096 * 9 8 3 11 11 C 1.32728 * 119.94020 * 342.35729 * 10 9 8 12 12 C 1.50644 * 120.20991 * 358.78433 * 11 10 9 13 13 H 1.09003 * 109.37984 * 154.93606 * 12 11 10 14 14 C 1.50701 * 109.37579 * 274.71010 * 12 11 10 15 15 H 1.08001 * 119.99443 * 114.09626 * 14 12 11 16 16 C 1.37871 * 120.00443 * 293.81816 * 14 12 11 17 17 N 1.31509 * 120.00529 * 180.27866 * 16 14 12 18 18 Si 1.86807 * 119.99974 * 0.27476 * 16 14 12 19 19 H 1.48495 * 109.47174 * 90.00058 * 18 16 14 20 20 H 1.48500 * 109.47347 * 210.00195 * 18 16 14 21 21 H 1.48503 * 109.46972 * 330.00457 * 18 16 14 22 22 H 1.09005 * 109.47224 * 169.90430 * 1 2 3 23 23 H 1.08993 * 109.47525 * 289.90784 * 1 2 3 24 24 H 1.08998 * 109.47134 * 49.90937 * 1 2 3 25 25 H 1.08003 * 119.93522 * 94.68273 * 8 3 2 26 26 H 1.08006 * 120.02678 * 178.74728 * 9 8 3 27 27 H 1.08005 * 120.03219 * 162.34123 * 10 9 8 28 28 H 1.07997 * 119.89379 * 178.75601 * 11 10 9 29 29 H 0.96993 * 120.00724 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6840 2.0039 1.3216 5 9 2.1271 3.3299 1.2699 6 9 0.3010 1.9824 1.5315 7 9 2.3256 1.3384 2.3716 8 6 1.4391 2.1061 -1.1380 9 6 1.9710 2.0147 -2.3506 10 6 3.1384 1.1493 -2.5768 11 6 3.8706 0.7421 -1.5474 12 6 3.5260 1.1856 -0.1495 13 1 3.9032 0.4543 0.5653 14 6 4.1627 2.5243 0.1215 15 1 3.5434 3.3959 0.2735 16 6 5.5357 2.6353 0.1810 17 7 6.0912 3.8025 0.4229 18 14 6.6069 1.1277 -0.0819 19 1 6.9288 0.9948 -1.5254 20 1 7.8646 1.2726 0.6944 21 1 5.8790 -0.0828 0.3763 22 1 -0.3634 -1.0118 -0.1801 23 1 -0.3634 0.3499 0.9662 24 1 -0.3633 0.6618 -0.7862 25 1 0.5941 2.7569 -0.9684 26 1 1.5465 2.5750 -3.1705 27 1 3.3996 0.8452 -3.5797 28 1 4.7157 0.0903 -1.7123 29 1 7.0571 3.8806 0.4652 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095080786.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:07 Heat of formation + Delta-G solvation = -137.821919 kcal Electronic energy + Delta-G solvation = -19787.750062 eV Core-core repulsion = 16262.966628 eV Total energy + Delta-G solvation = -3524.783434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.43853 -47.01854 -46.71934 -39.08963 -35.78717 -32.73592 -30.55431 -30.23607 -26.70079 -25.77436 -23.62010 -21.29960 -21.13237 -18.33083 -17.75483 -17.53004 -17.20505 -15.73610 -15.64485 -14.98044 -14.58811 -14.16721 -13.93670 -13.65542 -13.39485 -13.22866 -13.14905 -12.96362 -12.77801 -12.65461 -12.35395 -11.71156 -11.30540 -11.02880 -10.70987 -10.57765 -10.35867 -9.89364 -9.77479 -9.26153 -9.01498 -8.66887 -7.58539 -6.16669 -4.20373 1.96215 3.21240 3.30299 3.32407 3.46301 3.60505 4.15291 4.32915 4.44876 4.73760 5.06612 5.16354 5.36581 5.46014 5.63068 5.71722 5.80779 5.89191 6.00324 6.04815 6.45868 6.63892 6.76792 7.10181 7.19616 7.42715 7.50197 7.67741 8.31751 8.92949 9.39560 10.92911 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.012536 C = 0.010635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.092052 B = 2233.013801 C = 2632.126069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.358 6.358 3 C 0.140 3.860 4 C 0.442 3.558 5 F -0.154 7.154 6 F -0.200 7.200 7 F -0.177 7.177 8 C -0.207 4.207 9 C -0.050 4.050 10 C -0.184 4.184 11 C -0.082 4.082 12 C 0.045 3.955 13 H 0.060 0.940 14 C -0.535 4.535 15 H 0.118 0.882 16 C 0.087 3.913 17 N -0.884 5.884 18 Si 0.861 3.139 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.259 1.259 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 -5.472 -2.479 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.277 6.277 3 C 0.100 3.900 4 C 0.388 3.612 5 F -0.135 7.135 6 F -0.182 7.182 7 F -0.159 7.159 8 C -0.225 4.225 9 C -0.069 4.069 10 C -0.202 4.202 11 C -0.101 4.101 12 C 0.026 3.974 13 H 0.078 0.922 14 C -0.571 4.571 15 H 0.135 0.865 16 C -0.117 4.117 17 N -0.520 5.520 18 Si 0.688 3.312 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.183 1.183 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.976 -5.512 -2.400 10.803 hybrid contribution 0.540 -0.318 -0.030 0.627 sum -8.436 -5.830 -2.429 10.538 Atomic orbital electron populations 1.23215 0.81696 1.02434 1.01916 1.88129 1.19740 1.25556 1.94232 1.21340 0.97867 0.82990 0.87850 1.21322 0.72593 0.78831 0.88458 1.93116 1.88071 1.36068 1.96219 1.93013 1.32948 1.96162 1.96097 1.93134 1.81588 1.80523 1.60605 1.22913 1.02214 1.03014 0.94396 1.21486 0.93785 0.95503 0.96078 1.21223 0.98125 1.02978 0.97853 1.23617 0.96593 0.93337 0.96510 1.18394 0.86306 1.00013 0.92688 0.92220 1.21588 0.93168 0.93234 1.49149 0.86465 1.24880 0.97587 0.95512 0.93714 1.69841 1.11162 1.23384 1.47631 0.87145 0.80647 0.84708 0.78713 1.19971 1.21272 1.18346 0.90183 0.92081 0.93195 0.86880 0.86735 0.87569 0.88017 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.91 101.05 1.00 1.05 15 2 O -0.36 -6.94 10.22 -35.23 -0.36 -7.30 15 3 C 0.14 2.93 0.34 -92.03 -0.03 2.90 15 4 C 0.44 9.36 2.15 37.16 0.08 9.44 15 5 F -0.15 -3.56 13.21 2.25 0.03 -3.53 15 6 F -0.20 -3.68 13.62 2.25 0.03 -3.65 15 7 F -0.18 -3.94 16.74 2.25 0.04 -3.90 15 8 C -0.21 -3.90 6.06 -36.33 -0.22 -4.12 15 9 C -0.05 -0.91 10.10 -37.89 -0.38 -1.29 15 10 C -0.18 -3.52 10.11 -37.88 -0.38 -3.90 15 11 C -0.08 -1.77 7.57 -36.22 -0.27 -2.04 15 12 C 0.04 1.06 1.11 -93.06 -0.10 0.95 15 13 H 0.06 1.47 6.59 -51.93 -0.34 1.13 15 14 C -0.53 -14.41 7.65 -34.44 -0.26 -14.67 15 15 H 0.12 3.38 4.98 -52.49 -0.26 3.11 15 16 C 0.09 2.43 5.46 -17.82 -0.10 2.34 15 17 N -0.88 -26.17 13.96 55.43 0.77 -25.39 15 18 Si 0.86 20.75 24.97 -169.99 -4.24 16.51 15 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 21 H -0.26 -6.00 6.36 56.52 0.36 -5.64 15 22 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 23 H 0.06 0.91 5.62 -51.93 -0.29 0.62 15 24 H 0.05 0.70 6.62 -51.93 -0.34 0.36 15 25 H 0.11 1.91 8.00 -52.48 -0.42 1.49 15 26 H 0.11 1.69 8.06 -52.48 -0.42 1.27 15 27 H 0.11 1.73 8.06 -52.48 -0.42 1.31 15 28 H 0.10 2.09 6.34 -52.49 -0.33 1.76 15 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 244.46 15.07 3.68 3.68 Total: -1.00 -29.22 244.46 -3.16 -32.38 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -2.44 Total: 0.54 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.67 Total: -9.34 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.77 Total: -25.39 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.36 Total: -7.30 kcal Atomic # 9 Polarization: -11.18 SS G_CDS: 0.10 Total: -11.08 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.24 Total: 16.51 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.22 -3.16 -32.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095080786.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.446 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds