Wall clock time and date at job start Mon Mar 30 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99828 * 2 1 4 4 C 1.52995 * 109.28882 * 66.22968 * 3 2 1 5 5 F 1.39907 * 109.46775 * 186.26264 * 4 3 2 6 6 F 1.39898 * 109.47539 * 306.25341 * 4 3 2 7 7 F 1.39892 * 109.47420 * 66.26162 * 4 3 2 8 8 C 1.50405 * 109.38078 * 306.66859 * 3 2 1 9 9 C 1.32718 * 120.16405 * 274.68940 * 8 3 2 10 10 C 1.47068 * 119.94460 * 358.77096 * 9 8 3 11 11 C 1.32728 * 119.94020 * 342.35729 * 10 9 8 12 12 C 1.50644 * 120.20991 * 358.78433 * 11 10 9 13 13 H 1.09003 * 109.37984 * 154.93606 * 12 11 10 14 14 C 1.50701 * 109.37579 * 274.71010 * 12 11 10 15 15 H 1.08001 * 119.99443 * 114.09626 * 14 12 11 16 16 C 1.37871 * 120.00443 * 293.81816 * 14 12 11 17 17 N 1.31509 * 120.00529 * 180.27866 * 16 14 12 18 18 Si 1.86807 * 119.99974 * 0.27476 * 16 14 12 19 19 H 1.48495 * 109.47174 * 90.00058 * 18 16 14 20 20 H 1.48500 * 109.47347 * 210.00195 * 18 16 14 21 21 H 1.48503 * 109.46972 * 330.00457 * 18 16 14 22 22 H 1.09005 * 109.47224 * 169.90430 * 1 2 3 23 23 H 1.08993 * 109.47525 * 289.90784 * 1 2 3 24 24 H 1.08998 * 109.47134 * 49.90937 * 1 2 3 25 25 H 1.08003 * 119.93522 * 94.68273 * 8 3 2 26 26 H 1.08006 * 120.02678 * 178.74728 * 9 8 3 27 27 H 1.08005 * 120.03219 * 162.34123 * 10 9 8 28 28 H 1.07997 * 119.89379 * 178.75601 * 11 10 9 29 29 H 0.96993 * 120.00724 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6840 2.0039 1.3216 5 9 2.1271 3.3299 1.2699 6 9 0.3010 1.9824 1.5315 7 9 2.3256 1.3384 2.3716 8 6 1.4391 2.1061 -1.1380 9 6 1.9710 2.0147 -2.3506 10 6 3.1384 1.1493 -2.5768 11 6 3.8706 0.7421 -1.5474 12 6 3.5260 1.1856 -0.1495 13 1 3.9032 0.4543 0.5653 14 6 4.1627 2.5243 0.1215 15 1 3.5434 3.3959 0.2735 16 6 5.5357 2.6353 0.1810 17 7 6.0912 3.8025 0.4229 18 14 6.6069 1.1277 -0.0819 19 1 6.9288 0.9948 -1.5254 20 1 7.8646 1.2726 0.6944 21 1 5.8790 -0.0828 0.3763 22 1 -0.3634 -1.0118 -0.1801 23 1 -0.3634 0.3499 0.9662 24 1 -0.3633 0.6618 -0.7862 25 1 0.5941 2.7569 -0.9684 26 1 1.5465 2.5750 -3.1705 27 1 3.3996 0.8452 -3.5797 28 1 4.7157 0.0903 -1.7123 29 1 7.0571 3.8806 0.4652 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095080786.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:07 Heat of formation + Delta-G solvation = -156.815145 kcal Electronic energy + Delta-G solvation = -19788.573670 eV Core-core repulsion = 16262.966628 eV Total energy + Delta-G solvation = -3525.607042 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.11913 -48.66410 -48.48290 -40.62742 -37.29907 -34.68708 -32.26646 -31.77214 -28.27369 -27.25837 -25.39334 -22.98543 -22.70716 -20.02974 -19.42166 -19.19613 -18.95232 -17.39885 -17.25201 -16.55006 -16.07252 -15.95920 -15.57429 -15.28639 -15.02311 -14.89198 -14.76478 -14.67968 -14.39970 -14.27134 -14.15848 -13.37310 -12.91083 -12.63424 -12.36662 -12.26091 -12.02822 -11.60772 -11.35882 -10.93830 -10.71176 -10.68342 -9.14312 -8.26196 -6.32996 0.45023 1.30695 1.36727 1.44126 1.81368 2.10753 2.35062 2.67970 2.81403 3.03691 3.18866 3.41437 3.80496 3.97278 4.30067 4.34016 4.52366 4.55533 4.57597 4.85690 4.90204 4.96255 5.24487 5.42642 5.61717 5.78579 5.98726 6.15528 6.25936 6.80778 7.30845 8.86431 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.024970 B = 0.012536 C = 0.010635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.092052 B = 2233.013801 C = 2632.126069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.371 6.371 3 C 0.142 3.858 4 C 0.437 3.563 5 F -0.170 7.170 6 F -0.183 7.183 7 F -0.189 7.189 8 C -0.216 4.216 9 C -0.056 4.056 10 C -0.163 4.163 11 C -0.121 4.121 12 C 0.042 3.958 13 H 0.041 0.959 14 C -0.530 4.530 15 H 0.092 0.908 16 C 0.032 3.968 17 N -0.934 5.934 18 Si 0.914 3.086 19 H -0.258 1.258 20 H -0.292 1.292 21 H -0.249 1.249 22 H 0.109 0.891 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.133 0.867 26 H 0.154 0.846 27 H 0.141 0.859 28 H 0.109 0.891 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.552 -6.778 -4.266 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.290 6.290 3 C 0.100 3.900 4 C 0.383 3.617 5 F -0.151 7.151 6 F -0.165 7.165 7 F -0.170 7.170 8 C -0.234 4.234 9 C -0.074 4.074 10 C -0.181 4.181 11 C -0.139 4.139 12 C 0.023 3.977 13 H 0.059 0.941 14 C -0.567 4.567 15 H 0.110 0.890 16 C -0.167 4.167 17 N -0.574 5.574 18 Si 0.739 3.261 19 H -0.183 1.183 20 H -0.218 1.218 21 H -0.173 1.173 22 H 0.127 0.873 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.126 0.874 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.295 -6.842 -4.197 13.054 hybrid contribution 0.747 0.081 0.540 0.925 sum -9.548 -6.761 -3.657 12.258 Atomic orbital electron populations 1.23482 0.79363 1.04705 1.02380 1.88100 1.22190 1.24456 1.94247 1.21160 0.96669 0.84046 0.88090 1.21586 0.73264 0.78142 0.88729 1.93085 1.88452 1.37292 1.96295 1.93043 1.31316 1.96054 1.96044 1.93105 1.82010 1.80653 1.61249 1.23112 1.03142 1.03112 0.94017 1.21949 0.93220 0.95229 0.96958 1.21748 0.97014 1.00510 0.98794 1.23531 0.98528 0.96220 0.95659 1.18227 0.88097 0.97499 0.93912 0.94079 1.21723 0.93011 0.94177 1.47794 0.89042 1.25606 0.99147 0.97948 0.93970 1.69977 1.11380 1.25610 1.50402 0.86274 0.78625 0.81799 0.79389 1.18253 1.21825 1.17280 0.87261 0.92186 0.91919 0.84939 0.82835 0.84114 0.87355 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.11 9.91 113.37 1.12 1.01 15 2 O -0.37 -13.62 10.22 -148.98 -1.52 -15.15 15 3 C 0.14 5.72 0.34 -11.71 0.00 5.71 15 4 C 0.44 18.35 2.15 71.98 0.15 18.50 15 5 F -0.17 -8.00 13.21 44.97 0.59 -7.40 15 6 F -0.18 -6.47 13.62 44.97 0.61 -5.85 15 7 F -0.19 -8.47 16.74 44.97 0.75 -7.72 15 8 C -0.22 -7.57 6.06 24.42 0.15 -7.42 15 9 C -0.06 -1.80 10.10 23.42 0.24 -1.56 15 10 C -0.16 -5.65 10.11 23.41 0.24 -5.41 15 11 C -0.12 -4.97 7.57 24.49 0.19 -4.78 15 12 C 0.04 1.93 1.11 -12.38 -0.01 1.92 15 13 H 0.04 2.03 6.59 -2.39 -0.02 2.02 15 14 C -0.53 -28.86 7.65 25.60 0.20 -28.66 15 15 H 0.09 5.40 4.98 -2.91 -0.01 5.38 15 16 C 0.03 1.83 5.46 84.65 0.46 2.29 15 17 N -0.93 -56.84 13.96 21.44 0.30 -56.54 15 18 Si 0.91 42.96 24.97 68.60 1.71 44.67 15 19 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 15 21 H -0.25 -11.12 6.36 99.48 0.63 -10.49 15 22 H 0.11 2.33 8.14 -2.38 -0.02 2.31 15 23 H 0.06 1.64 5.62 -2.39 -0.01 1.62 15 24 H 0.06 1.55 6.62 -2.39 -0.02 1.53 15 25 H 0.13 4.08 8.00 -2.91 -0.02 4.05 15 26 H 0.15 3.74 8.06 -2.91 -0.02 3.72 15 27 H 0.14 3.89 8.06 -2.91 -0.02 3.87 15 28 H 0.11 4.21 6.34 -2.91 -0.02 4.19 15 29 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 Total: -1.00 -63.66 244.46 6.28 -57.38 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.11 Total: 9.02 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 2.72 Total: -18.40 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.30 Total: -56.54 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.52 Total: -15.15 kcal Atomic # 9 Polarization: -22.94 SS G_CDS: 1.96 Total: -20.98 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.71 Total: 44.67 kcal Total: -63.66 6.28 -57.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095080786.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.438 kcal (2) G-P(sol) polarization free energy of solvation -63.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds