Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 114.00118 * 2 1 4 4 C 1.52993 * 109.32855 * 64.32000 * 3 2 1 5 5 F 1.39891 * 109.47527 * 173.64088 * 4 3 2 6 6 F 1.39899 * 109.47002 * 293.64659 * 4 3 2 7 7 F 1.39907 * 109.46900 * 53.64091 * 4 3 2 8 8 C 1.50581 * 109.39769 * 184.10207 * 3 2 1 9 9 C 1.32857 * 120.17546 * 154.70722 * 8 3 2 10 10 C 1.47169 * 119.77292 * 0.13081 * 9 8 3 11 11 C 1.32865 * 119.77179 * 340.67072 * 10 9 8 12 12 C 1.50576 * 120.17384 * 359.85634 * 11 10 9 13 13 H 1.09006 * 109.39530 * 154.98600 * 12 11 10 14 14 C 1.50694 * 109.40127 * 274.80626 * 12 11 10 15 15 H 1.07997 * 120.00388 * 120.00094 * 14 12 11 16 16 C 1.37883 * 119.99758 * 300.00248 * 14 12 11 17 17 N 1.31513 * 120.00165 * 359.97438 * 16 14 12 18 18 Si 1.86809 * 119.99733 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46809 * 89.99951 * 18 16 14 20 20 H 1.48497 * 109.46880 * 210.00143 * 18 16 14 21 21 H 1.48500 * 109.47241 * 329.99947 * 18 16 14 22 22 H 1.09004 * 109.47142 * 53.00850 * 1 2 3 23 23 H 1.09000 * 109.47477 * 173.01147 * 1 2 3 24 24 H 1.09004 * 109.47615 * 293.01196 * 1 2 3 25 25 H 1.08005 * 119.90866 * 334.97858 * 8 3 2 26 26 H 1.08002 * 120.10999 * 180.11778 * 9 8 3 27 27 H 1.08002 * 120.11229 * 160.68869 * 10 9 8 28 28 H 1.07997 * 119.91125 * 179.88127 * 11 10 9 29 29 H 0.97000 * 119.99913 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6446 2.0226 1.3011 5 9 2.3283 3.2411 1.3701 6 9 0.2661 2.2588 1.3319 7 9 2.0052 1.2232 2.3913 8 6 3.5078 1.1861 -0.1016 9 6 4.2241 2.1822 -0.6114 10 6 3.5491 3.4052 -1.0745 11 6 2.2486 3.3789 -1.3452 12 6 1.4673 2.1021 -1.1822 13 1 0.4176 2.3395 -1.0089 14 6 1.5930 1.2749 -2.4355 15 1 2.0237 0.2856 -2.3887 16 6 1.1581 1.7811 -3.6421 17 7 0.6332 2.9855 -3.6990 18 14 1.3146 0.7559 -5.1959 19 1 0.0861 -0.0583 -5.3774 20 1 1.4909 1.6537 -6.3655 21 1 2.4912 -0.1426 -5.0798 22 1 -0.3634 0.6184 -0.8208 23 1 -0.3634 -1.0200 -0.1250 24 1 -0.3634 0.4017 0.9459 25 1 4.0005 0.2866 0.2369 26 1 5.2980 2.0947 -0.6856 27 1 4.1091 4.3209 -1.1943 28 1 1.7506 4.2756 -1.6833 29 1 0.3270 3.3415 -4.5478 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095080787.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = -153.123164 kcal Electronic energy + Delta-G solvation = -19762.227752 eV Core-core repulsion = 16236.780806 eV Total energy + Delta-G solvation = -3525.446946 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.51566 -47.03617 -46.92881 -38.83550 -35.67289 -32.85103 -29.88239 -29.62506 -26.57500 -25.84700 -23.63712 -21.19171 -20.83865 -18.13968 -18.04461 -17.66204 -16.32906 -16.06009 -15.09523 -14.93508 -14.31717 -14.10696 -13.78426 -13.71800 -13.41202 -13.36785 -13.13501 -13.08059 -12.60967 -12.45915 -12.24482 -11.63779 -11.05198 -10.83815 -10.79037 -10.44818 -10.25551 -10.05409 -9.70904 -9.24452 -8.85817 -8.58939 -7.27060 -6.19253 -4.23426 2.22401 3.23523 3.30472 3.34645 3.41412 3.91478 4.17710 4.29934 4.60286 4.72201 5.01329 5.15899 5.56133 5.73010 5.95876 6.00312 6.11068 6.18961 6.22754 6.49883 6.91831 6.95043 7.05574 7.34289 7.52612 7.74492 7.80631 7.96733 8.04018 8.80925 9.39805 10.88628 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.010778 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.981948 B = 2597.314263 C = 2887.743324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.346 6.346 3 C 0.136 3.864 4 C 0.419 3.581 5 F -0.176 7.176 6 F -0.187 7.187 7 F -0.190 7.190 8 C -0.175 4.175 9 C -0.057 4.057 10 C -0.215 4.215 11 C -0.034 4.034 12 C 0.041 3.959 13 H 0.054 0.946 14 C -0.494 4.494 15 H 0.073 0.927 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.040 0.960 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 -1.242 6.647 7.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.264 6.264 3 C 0.095 3.905 4 C 0.365 3.635 5 F -0.157 7.157 6 F -0.168 7.168 7 F -0.171 7.171 8 C -0.194 4.194 9 C -0.075 4.075 10 C -0.233 4.233 11 C -0.053 4.053 12 C 0.022 3.978 13 H 0.072 0.928 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.196 1.196 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.120 0.880 28 H 0.129 0.871 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.899 -1.271 6.548 6.936 hybrid contribution -0.202 -0.080 -0.751 0.782 sum 1.697 -1.350 5.797 6.190 Atomic orbital electron populations 1.23105 0.80997 1.02948 1.01446 1.87959 1.20304 1.24097 1.94059 1.21318 0.94422 0.85601 0.89199 1.22242 0.74174 0.78394 0.88724 1.93166 1.79631 1.46163 1.96782 1.93090 1.32141 1.94698 1.96916 1.93114 1.91583 1.73818 1.58607 1.22281 0.90906 1.00090 1.06085 1.21600 0.98302 0.93726 0.93905 1.21281 0.95492 0.96567 1.09999 1.23568 0.94609 0.98049 0.89054 1.18496 0.96117 0.90822 0.92338 0.92813 1.20770 1.41385 1.01049 0.90007 0.90870 1.24985 0.94561 0.95119 0.99216 1.69934 1.40425 1.15885 1.26328 0.86434 0.78710 0.79942 0.82109 1.20511 1.21203 1.19630 0.90810 0.90180 0.94162 0.86429 0.86811 0.88046 0.87071 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.64 101.05 0.97 1.18 15 2 O -0.35 -7.38 9.28 -35.23 -0.33 -7.71 15 3 C 0.14 2.93 0.29 -92.07 -0.03 2.90 15 4 C 0.42 8.49 2.17 37.15 0.08 8.57 15 5 F -0.18 -3.55 14.14 2.25 0.03 -3.52 15 6 F -0.19 -3.74 13.53 2.25 0.03 -3.71 15 7 F -0.19 -3.68 17.00 2.25 0.04 -3.64 15 8 C -0.18 -3.53 8.28 -36.22 -0.30 -3.83 15 9 C -0.06 -1.10 9.80 -37.81 -0.37 -1.47 15 10 C -0.22 -4.45 8.95 -37.81 -0.34 -4.79 15 11 C -0.03 -0.79 7.02 -36.22 -0.25 -1.04 15 12 C 0.04 0.97 0.92 -93.22 -0.09 0.88 15 13 H 0.05 1.36 6.08 -51.93 -0.32 1.05 15 14 C -0.49 -12.77 6.96 -34.44 -0.24 -13.01 15 15 H 0.07 1.95 7.35 -52.49 -0.39 1.56 15 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 15 17 N -0.89 -23.97 12.26 55.43 0.68 -23.29 15 18 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 15 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 22 H 0.07 1.53 5.77 -51.93 -0.30 1.23 15 23 H 0.08 1.29 8.14 -51.93 -0.42 0.86 15 24 H 0.04 0.71 6.01 -51.93 -0.31 0.40 15 25 H 0.12 2.15 8.06 -52.48 -0.42 1.72 15 26 H 0.11 1.82 8.06 -52.49 -0.42 1.39 15 27 H 0.10 1.87 8.06 -52.49 -0.42 1.45 15 28 H 0.11 2.64 7.90 -52.49 -0.41 2.23 15 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 LS Contribution 250.12 15.07 3.77 3.77 Total: -1.00 -27.00 250.12 -4.01 -31.00 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -2.55 Total: 0.47 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.66 Total: -9.03 kcal Atomic # 7 Polarization: -23.97 SS G_CDS: 0.68 Total: -23.29 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.33 Total: -7.71 kcal Atomic # 9 Polarization: -10.97 SS G_CDS: 0.10 Total: -10.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.00 -4.01 -31.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095080787.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.121 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds